Wall clock time and date at job start Mon Mar 30 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47002 * 2 1 4 4 C 1.42901 * 114.00010 * 180.02562 * 3 2 1 5 5 C 1.50692 * 109.46900 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00706 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99576 * 179.97438 * 5 4 3 8 8 C 1.46918 * 120.63391 * 359.97153 * 7 5 4 9 9 C 1.53194 * 108.78089 * 233.63599 * 8 7 5 10 10 C 1.53043 * 109.30776 * 305.36420 * 9 8 7 11 11 C 1.53037 * 109.53875 * 61.36647 * 10 9 8 12 12 H 1.08996 * 109.49996 * 58.58482 * 11 10 9 13 13 C 1.53000 * 109.49597 * 178.68184 * 11 10 9 14 14 N 1.46500 * 109.46985 * 184.83666 * 13 11 10 15 15 C 1.36942 * 120.00460 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99496 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00487 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99716 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00173 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46865 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47187 * 120.00262 * 19 17 15 22 22 H 1.48500 * 109.47166 * 240.00208 * 19 17 15 23 23 C 1.46929 * 120.62687 * 180.02562 * 7 5 4 24 24 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46989 * 299.99826 * 1 2 3 26 26 H 1.08990 * 109.47440 * 59.99788 * 1 2 3 27 27 H 1.09009 * 109.46546 * 240.00302 * 2 1 3 28 28 H 1.08997 * 109.47289 * 120.00603 * 2 1 3 29 29 H 1.08998 * 109.47126 * 59.99665 * 4 3 2 30 30 H 1.09005 * 109.46434 * 299.99898 * 4 3 2 31 31 H 1.09008 * 109.58859 * 113.84030 * 8 7 5 32 32 H 1.09002 * 109.58786 * 353.42232 * 8 7 5 33 33 H 1.09003 * 109.49900 * 185.41596 * 9 8 7 34 34 H 1.08996 * 109.52526 * 65.32701 * 9 8 7 35 35 H 1.09004 * 109.46377 * 301.34200 * 10 9 8 36 36 H 1.08996 * 109.44980 * 181.37869 * 10 9 8 37 37 H 1.08993 * 109.47360 * 304.83715 * 13 11 10 38 38 H 1.09005 * 109.47252 * 64.84167 * 13 11 10 39 39 H 0.97005 * 119.99906 * 359.97438 * 14 13 11 40 40 H 0.97007 * 119.99549 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.59209 * 6.57692 * 23 7 5 42 42 H 1.09003 * 109.58217 * 246.14973 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2663 0.0002 8 6 6.1722 2.2400 0.0004 9 6 7.1257 2.5109 1.1684 10 6 7.6484 3.9461 1.0726 11 6 6.4762 4.9252 1.1690 12 1 5.9501 4.7712 2.1110 13 6 7.0031 6.3602 1.1061 14 7 5.8956 7.2965 1.3140 15 6 6.1279 8.6460 1.2994 16 1 7.1277 9.0200 1.1352 17 6 5.0786 9.5331 1.4959 18 7 3.8601 9.0773 1.6956 19 14 5.3957 11.3739 1.4768 20 1 6.8390 11.6250 1.2340 21 1 4.5956 12.0028 0.3954 22 1 5.0044 11.9572 2.7852 23 6 5.5153 4.6817 0.0015 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 6.7238 2.2818 -0.9390 32 1 5.7211 1.2547 0.1179 33 1 7.9634 1.8148 1.1232 34 1 6.5940 2.3795 2.1107 35 1 8.1592 4.0837 0.1195 36 1 8.3461 4.1335 1.8888 37 1 7.7531 6.5063 1.8833 38 1 7.4522 6.5400 0.1293 39 1 4.9976 6.9605 1.4612 40 1 3.1268 9.6973 1.8332 41 1 4.6307 5.3074 0.1198 42 1 6.0133 4.9230 -0.9377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713223234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:25 Heat of formation + Delta-G solvation = -102.653616 kcal Electronic energy + Delta-G solvation = -21202.423709 eV Core-core repulsion = 17988.531245 eV Total energy + Delta-G solvation = -3213.892464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32878 -39.25286 -38.29884 -36.62522 -34.51890 -33.08063 -32.46565 -31.51859 -29.12420 -27.08283 -25.88970 -24.85693 -23.67907 -22.68512 -21.55797 -20.06818 -19.18165 -18.38141 -17.63427 -17.41754 -16.75823 -16.65984 -16.14126 -15.80329 -15.40063 -15.34635 -15.12611 -14.52993 -14.29454 -14.11035 -13.89449 -13.71958 -13.63802 -13.25283 -13.03564 -12.89470 -12.68793 -12.33140 -12.16380 -12.14385 -12.02398 -11.94220 -11.83256 -11.55074 -11.31448 -10.98896 -10.74607 -10.65912 -9.66572 -9.02956 -7.95780 -5.26877 1.44115 1.46772 1.53720 1.56879 1.72003 2.54441 2.89185 3.37206 3.52371 3.72999 3.89417 3.90874 4.08455 4.12254 4.16305 4.20538 4.28310 4.33725 4.34910 4.46085 4.51110 4.62862 4.76358 4.81741 4.82874 4.91041 4.92172 5.02927 5.03479 5.13903 5.24226 5.26802 5.34912 5.46436 5.49760 5.53002 6.12798 6.24651 6.43695 7.16121 7.29712 8.06509 8.28309 9.28000 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.004230 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.343343 B = 6617.864979 C = 7906.955104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.410 6.410 4 C 0.056 3.944 5 C 0.495 3.505 6 O -0.586 6.586 7 N -0.607 5.607 8 C 0.097 3.903 9 C -0.128 4.128 10 C -0.107 4.107 11 C -0.095 4.095 12 H 0.049 0.951 13 C 0.157 3.843 14 N -0.750 5.750 15 C -0.245 4.245 16 H 0.081 0.919 17 C -0.082 4.082 18 N -0.974 5.974 19 Si 0.979 3.021 20 H -0.260 1.260 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.127 3.873 24 H 0.100 0.900 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.369 0.631 40 H 0.250 0.750 41 H 0.045 0.955 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.422 -26.030 -4.241 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.026 4.026 3 O -0.330 6.330 4 C -0.023 4.023 5 C 0.284 3.716 6 O -0.465 6.465 7 N -0.341 5.341 8 C -0.024 4.024 9 C -0.166 4.166 10 C -0.145 4.145 11 C -0.114 4.114 12 H 0.067 0.933 13 C 0.031 3.969 14 N -0.393 5.393 15 C -0.377 4.377 16 H 0.099 0.901 17 C -0.274 4.274 18 N -0.624 5.624 19 Si 0.808 3.192 20 H -0.184 1.184 21 H -0.222 1.222 22 H -0.220 1.220 23 C 0.004 3.996 24 H 0.119 0.881 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.201 0.799 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.982 -25.306 -4.269 26.352 hybrid contribution -0.645 1.413 0.228 1.570 sum 5.337 -23.894 -4.041 24.814 Atomic orbital electron populations 1.21801 0.93684 1.03520 1.02153 1.22802 0.95988 0.81797 1.02041 1.88026 1.19998 1.29141 1.95793 1.22336 0.83331 0.91335 1.05295 1.21307 0.82275 0.92274 0.75778 1.90766 1.50876 1.53984 1.50868 1.48243 1.05606 1.07638 1.72584 1.22235 0.88738 0.90887 1.00511 1.21931 1.00022 0.96548 0.98104 1.21520 0.95573 0.93856 1.03520 1.21546 0.97379 0.95254 0.97255 0.93251 1.20865 0.90197 0.87955 0.97925 1.42724 1.06979 1.02637 1.86951 1.19730 0.94314 0.83986 1.39674 0.90110 1.25711 0.95237 1.02986 1.03482 1.69895 1.00056 1.34716 1.57781 0.84989 0.77916 0.79684 0.76654 1.18439 1.22173 1.21977 1.21366 0.98103 0.81514 0.98599 0.88123 0.93246 0.93019 0.90966 0.91250 0.86643 0.87130 0.88932 0.86652 0.86690 0.92244 0.90221 0.90651 0.95409 0.95462 0.79913 0.94143 0.93676 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.41 -11.15 9.88 -129.94 -1.28 -12.43 16 4 C 0.06 1.16 4.76 71.23 0.34 1.50 16 5 C 0.49 16.33 7.77 87.65 0.68 17.01 16 6 O -0.59 -27.94 15.91 16.01 0.25 -27.68 16 7 N -0.61 -16.83 2.97 -818.97 -2.43 -19.26 16 8 C 0.10 1.40 6.34 86.36 0.55 1.95 16 9 C -0.13 -1.83 6.08 30.67 0.19 -1.64 16 10 C -0.11 -2.24 5.17 30.62 0.16 -2.08 16 11 C -0.09 -3.14 2.37 -10.73 -0.03 -3.16 16 12 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 13 C 0.16 6.47 5.65 86.38 0.49 6.96 16 14 N -0.75 -41.18 5.38 -343.46 -1.85 -43.02 16 15 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 16 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 17 C -0.08 -5.04 5.50 84.86 0.47 -4.58 16 18 N -0.97 -64.72 13.06 21.65 0.28 -64.44 16 19 Si 0.98 48.60 29.55 68.60 2.03 50.62 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 22 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 23 C 0.13 4.56 5.51 86.35 0.48 5.04 16 24 H 0.10 0.99 8.14 -2.38 -0.02 0.98 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.12 1.46 7.94 -2.39 -0.02 1.44 16 30 H 0.11 1.52 7.69 -2.38 -0.02 1.50 16 31 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.12 0.85 5.93 -2.39 -0.01 0.84 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.37 22.40 6.89 -92.70 -0.64 21.76 16 40 H 0.25 16.04 8.31 -92.70 -0.77 15.27 16 41 H 0.04 2.16 6.20 -2.39 -0.01 2.15 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -86.91 338.96 2.73 -84.18 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.35 Total: 25.20 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.38 Total: 6.83 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -4.00 Total: -126.72 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.03 Total: -40.12 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.62 kcal Total: -86.91 2.73 -84.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713223234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.472 kcal (2) G-P(sol) polarization free energy of solvation -86.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds