Wall clock time and date at job start Mon Mar 30 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47043 * 2 1 4 4 C 1.42903 * 113.99734 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47075 * 329.99791 * 4 3 2 6 6 C 1.52996 * 109.47056 * 90.00383 * 4 3 2 7 7 C 1.50707 * 109.46632 * 209.99717 * 4 3 2 8 8 O 1.21273 * 120.00017 * 355.00384 * 7 4 3 9 9 N 1.34777 * 119.99546 * 174.99877 * 7 4 3 10 10 C 1.46500 * 119.99796 * 180.02562 * 9 7 4 11 11 C 1.52999 * 109.47020 * 179.72519 * 10 9 7 12 12 N 1.46500 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.36938 * 119.99836 * 269.99767 * 12 11 10 14 14 H 1.08002 * 119.99581 * 140.53730 * 13 12 11 15 15 C 1.38812 * 120.00616 * 320.54014 * 13 12 11 16 16 N 1.31624 * 119.99524 * 340.27841 * 15 13 12 17 17 Si 1.86794 * 120.00109 * 160.28153 * 15 13 12 18 18 H 1.48500 * 109.47480 * 89.99846 * 17 15 13 19 19 H 1.48502 * 109.47077 * 210.00158 * 17 15 13 20 20 H 1.48507 * 109.47271 * 329.99724 * 17 15 13 21 21 C 1.46494 * 120.00038 * 90.00395 * 12 11 10 22 22 C 1.52999 * 117.50033 * 183.28675 * 21 12 11 23 23 C 1.52995 * 60.00103 * 252.50713 * 22 21 12 24 24 H 1.09004 * 109.46790 * 300.00019 * 1 2 3 25 25 H 1.08997 * 109.47473 * 59.99937 * 1 2 3 26 26 H 1.09002 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46997 * 240.00371 * 2 1 3 28 28 H 1.08997 * 109.47473 * 120.00063 * 2 1 3 29 29 H 1.08997 * 109.47662 * 59.99767 * 6 4 3 30 30 H 1.08997 * 109.47267 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.47117 * 299.99548 * 6 4 3 32 32 H 0.97007 * 120.00211 * 359.72960 * 9 7 4 33 33 H 1.09002 * 109.47149 * 299.72360 * 10 9 7 34 34 H 1.08997 * 109.47068 * 59.73118 * 10 9 7 35 35 H 1.09004 * 109.47498 * 300.00146 * 11 10 9 36 36 H 1.09004 * 109.47083 * 60.00326 * 11 10 9 37 37 H 0.96996 * 119.99489 * 175.02520 * 16 15 13 38 38 H 1.09001 * 115.55121 * 328.99681 * 21 12 11 39 39 H 1.08997 * 117.50127 * 359.97438 * 22 21 12 40 40 H 1.09000 * 117.50113 * 145.01720 * 22 21 12 41 41 H 1.09005 * 117.49952 * 252.50892 * 23 22 21 42 42 H 1.09007 * 117.51638 * 107.48201 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6015 0.5130 6 6 3.9387 1.5007 -1.4433 7 6 3.8347 2.7264 0.7098 8 8 2.9864 3.5046 1.0912 9 7 5.1387 2.9938 0.9213 10 6 5.5313 4.2245 1.6124 11 6 7.0559 4.2805 1.7276 12 7 7.4485 5.5114 2.4181 13 6 7.6899 6.6521 1.7000 14 1 7.3631 7.6088 2.0801 15 6 8.3546 6.5790 0.4835 16 7 9.0845 5.5224 0.1950 17 14 8.2132 7.9801 -0.7437 18 1 9.2943 8.9673 -0.4948 19 1 8.3398 7.4446 -2.1231 20 1 6.8930 8.6423 -0.5892 21 6 7.5830 5.5220 3.8768 22 6 7.9205 6.8561 4.5456 23 6 8.9798 5.7558 4.4559 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5060 2.3592 -1.9568 30 1 5.0252 1.5872 -1.4437 31 1 3.6465 0.5848 -1.9572 32 1 5.8170 2.3694 0.6198 33 1 5.1776 5.0870 1.0475 34 1 5.0910 4.2376 2.6094 35 1 7.4096 3.4179 2.2924 36 1 7.4963 4.2674 0.7306 37 1 9.4900 5.4380 -0.6821 38 1 6.9227 4.8418 4.4148 39 1 8.0429 7.7258 3.9002 40 1 7.4820 7.0540 5.5236 41 1 9.2381 5.2297 5.3750 42 1 9.7988 5.9014 3.7514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713554534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:12 Heat of formation + Delta-G solvation = -42.414488 kcal Electronic energy + Delta-G solvation = -21045.209845 eV Core-core repulsion = 17833.929546 eV Total energy + Delta-G solvation = -3211.280299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68878 -37.74979 -37.03590 -34.70889 -33.28644 -32.46584 -30.89929 -30.09803 -27.58241 -24.82756 -23.93705 -22.81897 -21.71808 -21.25206 -20.13948 -19.72171 -17.20133 -17.05737 -16.15657 -15.87698 -15.51689 -15.14964 -14.89516 -14.49881 -14.07279 -13.85963 -13.43973 -13.18093 -12.83063 -12.66013 -12.44039 -12.29270 -12.08622 -11.92838 -11.60097 -11.46742 -11.15188 -11.05782 -10.74363 -10.72810 -10.35471 -10.15891 -9.93419 -9.86622 -9.63198 -9.35970 -9.20385 -8.58115 -8.49290 -6.61001 -5.86527 -3.52877 2.92159 3.06199 3.31520 3.39455 3.44605 3.96778 4.41099 4.71957 4.82557 4.90720 4.95455 4.99143 5.09126 5.16301 5.26464 5.31143 5.35826 5.58571 5.60765 5.72686 5.90330 5.95100 6.02534 6.03505 6.09173 6.19944 6.27791 6.50288 6.50549 6.61536 6.83460 6.96092 7.01555 7.08622 7.22759 7.46468 7.74737 7.90421 8.42733 8.58529 9.07408 9.67959 10.25880 11.08987 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.004267 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.091822 B = 6559.795437 C = 7368.785804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.083 0.917 6 C -0.170 4.170 7 C 0.508 3.492 8 O -0.527 6.527 9 N -0.718 5.718 10 C 0.100 3.900 11 C 0.142 3.858 12 N -0.547 5.547 13 C -0.261 4.261 14 H 0.065 0.935 15 C 0.017 3.983 16 N -0.884 5.884 17 Si 0.896 3.104 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.119 3.881 22 C -0.194 4.194 23 C -0.219 4.219 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.099 0.901 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 -12.354 -0.713 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.009 3.991 5 H 0.101 0.899 6 C -0.228 4.228 7 C 0.291 3.709 8 O -0.402 6.402 9 N -0.371 5.371 10 C -0.026 4.026 11 C 0.015 3.985 12 N -0.264 5.264 13 C -0.391 4.391 14 H 0.083 0.917 15 C -0.184 4.184 16 N -0.525 5.525 17 Si 0.724 3.276 18 H -0.211 1.211 19 H -0.214 1.214 20 H -0.201 1.201 21 C 0.010 3.990 22 C -0.232 4.232 23 C -0.260 4.260 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.955 -11.617 -0.580 14.679 hybrid contribution 0.578 0.149 -0.819 1.013 sum -8.378 -11.468 -1.399 14.271 Atomic orbital electron populations 1.21724 0.93587 1.02019 1.03440 1.22568 0.95874 0.83883 0.99937 1.88070 1.18714 1.25918 1.94944 1.21922 0.83390 0.96944 0.96801 0.89927 1.22225 1.02030 1.03445 0.95075 1.20302 0.83110 0.87490 0.79959 1.90701 1.50286 1.48904 1.50348 1.46031 1.06345 1.24903 1.59843 1.22354 0.99804 0.84777 0.95616 1.21004 0.88724 0.87700 1.01071 1.43168 1.75788 1.08554 0.98902 1.19041 1.30582 0.87159 1.02303 0.91713 1.25232 0.94963 0.97472 1.00764 1.70055 1.31129 1.30183 1.21137 0.86427 0.78304 0.82173 0.80666 1.21091 1.21389 1.20086 1.21244 0.94853 0.97126 0.85777 1.23020 1.04853 0.94849 1.00516 1.23339 0.96313 1.04333 1.01999 0.91660 0.91780 0.91177 0.93337 0.93353 0.91054 0.90622 0.91553 0.76976 0.91513 0.93082 0.94932 0.88336 0.93514 0.89552 0.88419 0.90736 0.91249 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.54 6.47 37.16 0.24 0.78 16 3 O -0.36 -5.13 9.53 -55.09 -0.52 -5.66 16 4 C 0.07 0.92 3.13 -27.88 -0.09 0.83 16 5 H 0.08 0.83 7.79 -51.93 -0.40 0.42 16 6 C -0.17 -1.84 9.48 37.16 0.35 -1.48 16 7 C 0.51 8.74 7.18 -10.98 -0.08 8.66 16 8 O -0.53 -11.60 16.51 -14.30 -0.24 -11.84 16 9 N -0.72 -11.72 5.52 -60.29 -0.33 -12.05 16 10 C 0.10 1.99 6.00 -4.04 -0.02 1.96 16 11 C 0.14 3.07 5.45 -4.04 -0.02 3.05 16 12 N -0.55 -13.10 2.75 -165.66 -0.46 -13.56 16 13 C -0.26 -6.87 8.47 -15.06 -0.13 -6.99 16 14 H 0.07 1.73 6.75 -52.49 -0.35 1.37 16 15 C 0.02 0.44 4.98 -17.43 -0.09 0.35 16 16 N -0.88 -24.02 11.50 55.49 0.64 -23.39 16 17 Si 0.90 21.08 29.60 -169.99 -5.03 16.05 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.12 2.51 6.56 -67.93 -0.45 2.07 16 22 C -0.19 -3.84 9.80 -26.73 -0.26 -4.10 16 23 C -0.22 -4.42 10.36 -26.73 -0.28 -4.70 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.39 7.87 -51.93 -0.41 -0.01 16 28 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 31 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 32 H 0.40 5.26 8.26 -40.82 -0.34 4.93 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.10 2.37 5.59 -51.93 -0.29 2.08 16 37 H 0.25 6.70 8.32 -40.82 -0.34 6.36 16 38 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.10 2.10 6.46 -51.93 -0.34 1.77 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -31.42 349.29 -8.27 -39.68 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.15 Total: 6.01 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.44 Total: -0.52 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.15 Total: -48.99 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.76 Total: -17.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.42 -8.27 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713554534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.731 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds