Wall clock time and date at job start Mon Mar 30 2020 01:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47043 * 2 1 4 4 C 1.42903 * 113.99734 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47075 * 329.99791 * 4 3 2 6 6 C 1.52996 * 109.47056 * 90.00383 * 4 3 2 7 7 C 1.50707 * 109.46632 * 209.99717 * 4 3 2 8 8 O 1.21273 * 120.00017 * 355.00384 * 7 4 3 9 9 N 1.34777 * 119.99546 * 174.99877 * 7 4 3 10 10 C 1.46500 * 119.99796 * 180.02562 * 9 7 4 11 11 C 1.52999 * 109.47020 * 179.72519 * 10 9 7 12 12 N 1.46500 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.36938 * 119.99836 * 269.99767 * 12 11 10 14 14 H 1.08002 * 119.99581 * 140.53730 * 13 12 11 15 15 C 1.38812 * 120.00616 * 320.54014 * 13 12 11 16 16 N 1.31624 * 119.99524 * 340.27841 * 15 13 12 17 17 Si 1.86794 * 120.00109 * 160.28153 * 15 13 12 18 18 H 1.48500 * 109.47480 * 89.99846 * 17 15 13 19 19 H 1.48502 * 109.47077 * 210.00158 * 17 15 13 20 20 H 1.48507 * 109.47271 * 329.99724 * 17 15 13 21 21 C 1.46494 * 120.00038 * 90.00395 * 12 11 10 22 22 C 1.52999 * 117.50033 * 183.28675 * 21 12 11 23 23 C 1.52995 * 60.00103 * 252.50713 * 22 21 12 24 24 H 1.09004 * 109.46790 * 300.00019 * 1 2 3 25 25 H 1.08997 * 109.47473 * 59.99937 * 1 2 3 26 26 H 1.09002 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46997 * 240.00371 * 2 1 3 28 28 H 1.08997 * 109.47473 * 120.00063 * 2 1 3 29 29 H 1.08997 * 109.47662 * 59.99767 * 6 4 3 30 30 H 1.08997 * 109.47267 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.47117 * 299.99548 * 6 4 3 32 32 H 0.97007 * 120.00211 * 359.72960 * 9 7 4 33 33 H 1.09002 * 109.47149 * 299.72360 * 10 9 7 34 34 H 1.08997 * 109.47068 * 59.73118 * 10 9 7 35 35 H 1.09004 * 109.47498 * 300.00146 * 11 10 9 36 36 H 1.09004 * 109.47083 * 60.00326 * 11 10 9 37 37 H 0.96996 * 119.99489 * 175.02520 * 16 15 13 38 38 H 1.09001 * 115.55121 * 328.99681 * 21 12 11 39 39 H 1.08997 * 117.50127 * 359.97438 * 22 21 12 40 40 H 1.09000 * 117.50113 * 145.01720 * 22 21 12 41 41 H 1.09005 * 117.49952 * 252.50892 * 23 22 21 42 42 H 1.09007 * 117.51638 * 107.48201 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6015 0.5130 6 6 3.9387 1.5007 -1.4433 7 6 3.8347 2.7264 0.7098 8 8 2.9864 3.5046 1.0912 9 7 5.1387 2.9938 0.9213 10 6 5.5313 4.2245 1.6124 11 6 7.0559 4.2805 1.7276 12 7 7.4485 5.5114 2.4181 13 6 7.6899 6.6521 1.7000 14 1 7.3631 7.6088 2.0801 15 6 8.3546 6.5790 0.4835 16 7 9.0845 5.5224 0.1950 17 14 8.2132 7.9801 -0.7437 18 1 9.2943 8.9673 -0.4948 19 1 8.3398 7.4446 -2.1231 20 1 6.8930 8.6423 -0.5892 21 6 7.5830 5.5220 3.8768 22 6 7.9205 6.8561 4.5456 23 6 8.9798 5.7558 4.4559 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5060 2.3592 -1.9568 30 1 5.0252 1.5872 -1.4437 31 1 3.6465 0.5848 -1.9572 32 1 5.8170 2.3694 0.6198 33 1 5.1776 5.0870 1.0475 34 1 5.0910 4.2376 2.6094 35 1 7.4096 3.4179 2.2924 36 1 7.4963 4.2674 0.7306 37 1 9.4900 5.4380 -0.6821 38 1 6.9227 4.8418 4.4148 39 1 8.0429 7.7258 3.9002 40 1 7.4820 7.0540 5.5236 41 1 9.2381 5.2297 5.3750 42 1 9.7988 5.9014 3.7514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713554534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:11 Heat of formation + Delta-G solvation = -62.344370 kcal Electronic energy + Delta-G solvation = -21046.074070 eV Core-core repulsion = 17833.929546 eV Total energy + Delta-G solvation = -3212.144524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99286 -38.99818 -38.59566 -36.29683 -35.01594 -33.51861 -32.55378 -31.08792 -29.23094 -26.48872 -25.24296 -23.67874 -23.27668 -22.85631 -21.62986 -21.36277 -18.60933 -18.09893 -17.88225 -17.27890 -16.89473 -16.65771 -16.21638 -16.13711 -15.62651 -15.29870 -14.59778 -14.47067 -14.23078 -14.00590 -13.76945 -13.37961 -13.27066 -13.18928 -12.93787 -12.87505 -12.62589 -12.51409 -12.29236 -12.14846 -12.02418 -11.93234 -11.67530 -11.35890 -11.01316 -10.90165 -10.51440 -10.46074 -10.06537 -8.53562 -7.83966 -5.54561 1.41514 1.45861 1.54699 1.57810 1.88755 2.47263 2.93849 3.14542 3.40105 3.52527 3.74856 3.92986 4.02381 4.21343 4.30127 4.34075 4.36528 4.39654 4.50078 4.51955 4.59747 4.61746 4.76859 4.81259 4.89544 4.95025 5.02968 5.04243 5.18887 5.21936 5.27684 5.32185 5.44780 5.56075 5.64932 5.72699 6.15041 6.44149 6.61558 7.12128 7.25693 7.78515 8.30560 9.06703 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.004267 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.091822 B = 6559.795437 C = 7368.785804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.394 6.394 4 C 0.078 3.922 5 H 0.120 0.880 6 C -0.165 4.165 7 C 0.502 3.498 8 O -0.583 6.583 9 N -0.706 5.706 10 C 0.120 3.880 11 C 0.151 3.849 12 N -0.566 5.566 13 C -0.268 4.268 14 H 0.054 0.946 15 C -0.023 4.023 16 N -0.905 5.905 17 Si 0.947 3.053 18 H -0.283 1.283 19 H -0.286 1.286 20 H -0.279 1.279 21 C 0.098 3.902 22 C -0.185 4.185 23 C -0.209 4.209 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.414 0.586 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.254 0.746 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 -14.299 -0.438 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.314 6.314 4 C 0.017 3.983 5 H 0.138 0.862 6 C -0.223 4.223 7 C 0.289 3.711 8 O -0.462 6.462 9 N -0.360 5.360 10 C -0.006 4.006 11 C 0.024 3.976 12 N -0.284 5.284 13 C -0.398 4.398 14 H 0.071 0.929 15 C -0.222 4.222 16 N -0.548 5.548 17 Si 0.775 3.225 18 H -0.210 1.210 19 H -0.211 1.211 20 H -0.205 1.205 21 C -0.009 4.009 22 C -0.223 4.223 23 C -0.250 4.250 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.251 0.749 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.072 -13.596 -0.308 16.348 hybrid contribution 0.588 0.728 -0.843 1.259 sum -8.484 -12.868 -1.150 15.457 Atomic orbital electron populations 1.21773 0.93199 1.03500 1.02327 1.22863 0.96316 0.82198 1.01668 1.88040 1.19333 1.28805 1.95175 1.21956 0.83467 0.95206 0.97661 0.86213 1.22229 1.02559 1.03951 0.93549 1.21249 0.82366 0.88513 0.79003 1.90671 1.51702 1.51121 1.52697 1.45837 1.07012 1.23939 1.59186 1.21840 0.98554 0.85171 0.95032 1.20874 0.89221 0.87582 0.99935 1.43375 1.76288 1.08475 1.00222 1.19129 1.30047 0.87747 1.02910 0.92877 1.25756 0.95131 0.99293 1.01996 1.70131 1.31972 1.31423 1.21280 0.85634 0.77830 0.80060 0.79019 1.20970 1.21140 1.20459 1.21546 0.96039 0.98806 0.84555 1.23029 1.04421 0.93413 1.01454 1.23235 0.94646 1.04744 1.02374 0.93228 0.92462 0.88367 0.90969 0.92072 0.93336 0.89414 0.88609 0.74883 0.95123 0.93573 0.93207 0.90579 0.93671 0.87155 0.90829 0.87278 0.87872 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.79 6.47 71.98 0.47 1.25 16 3 O -0.39 -10.79 9.53 -129.99 -1.24 -12.02 16 4 C 0.08 1.86 3.13 29.85 0.09 1.95 16 5 H 0.12 1.95 7.79 -2.39 -0.02 1.93 16 6 C -0.17 -3.19 9.48 71.98 0.68 -2.50 16 7 C 0.50 17.10 7.18 87.66 0.63 17.73 16 8 O -0.58 -26.25 16.51 15.98 0.26 -25.99 16 9 N -0.71 -22.59 5.52 -463.06 -2.55 -25.14 16 10 C 0.12 4.86 6.00 86.38 0.52 5.38 16 11 C 0.15 6.50 5.45 86.38 0.47 6.97 16 12 N -0.57 -27.22 2.75 -678.04 -1.86 -29.08 16 13 C -0.27 -14.34 8.47 84.03 0.71 -13.63 16 14 H 0.05 2.91 6.75 -2.91 -0.02 2.89 16 15 C -0.02 -1.24 4.98 84.86 0.42 -0.82 16 16 N -0.91 -49.78 11.50 21.65 0.25 -49.53 16 17 Si 0.95 43.99 29.60 68.60 2.03 46.02 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 C 0.10 4.05 6.56 44.99 0.30 4.34 16 22 C -0.19 -7.07 9.80 30.59 0.30 -6.77 16 23 C -0.21 -8.16 10.36 30.59 0.32 -7.84 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.91 7.87 -2.39 -0.02 0.89 16 28 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.46 7.93 -2.39 -0.02 1.45 16 31 H 0.10 1.30 7.87 -2.38 -0.02 1.28 16 32 H 0.41 10.31 8.26 -92.70 -0.77 9.55 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 36 H 0.08 3.69 5.59 -2.39 -0.01 3.68 16 37 H 0.25 13.47 8.32 -92.71 -0.77 12.70 16 38 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 39 H 0.07 3.18 6.46 -2.39 -0.02 3.16 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 42 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -70.21 349.29 2.76 -67.45 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.23 Total: 23.91 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.65 Total: 4.39 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -4.17 Total: -103.76 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.97 Total: -38.01 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.21 2.76 -67.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713554534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.110 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds