Wall clock time and date at job start Mon Mar 30 2020 01:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47193 * 2 1 4 4 C 1.42896 * 113.99967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47134 * 179.97438 * 4 3 2 6 6 O 1.21277 * 119.99638 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00049 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00268 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46891 * 35.00008 * 8 7 5 10 10 C 1.52996 * 109.47303 * 275.00122 * 8 7 5 11 11 C 1.52997 * 109.47131 * 299.99946 * 10 8 7 12 12 C 1.52999 * 109.46991 * 299.99311 * 11 10 8 13 13 C 1.53006 * 109.46626 * 60.00378 * 12 11 10 14 14 H 1.09001 * 109.46801 * 59.99811 * 13 12 11 15 15 N 1.46500 * 109.46998 * 179.97438 * 13 12 11 16 16 C 1.36944 * 120.00017 * 275.00375 * 15 13 12 17 17 H 1.07997 * 119.99813 * 359.97438 * 16 15 13 18 18 C 1.38806 * 119.99784 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00406 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99911 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46788 * 59.99683 * 20 18 16 22 22 H 1.48496 * 109.47411 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47141 * 300.00107 * 20 18 16 24 24 C 1.52997 * 109.47127 * 299.99539 * 13 12 11 25 25 H 1.09003 * 109.46941 * 60.00333 * 1 2 3 26 26 H 1.09007 * 109.47227 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47696 * 300.00252 * 1 2 3 28 28 H 1.08995 * 109.47184 * 239.99653 * 2 1 3 29 29 H 1.09003 * 109.46551 * 120.00338 * 2 1 3 30 30 H 1.09000 * 109.47260 * 60.00469 * 4 3 2 31 31 H 1.09000 * 109.47850 * 300.00521 * 4 3 2 32 32 H 0.97006 * 120.00260 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.46993 * 60.00077 * 10 8 7 34 34 H 1.09000 * 109.47380 * 179.97438 * 10 8 7 35 35 H 1.09002 * 109.47153 * 179.97438 * 11 10 8 36 36 H 1.08993 * 109.47194 * 60.00154 * 11 10 8 37 37 H 1.08993 * 109.47839 * 300.00447 * 12 11 10 38 38 H 1.09000 * 109.47160 * 180.02562 * 12 11 10 39 39 H 0.96995 * 120.00293 * 94.99410 * 15 13 12 40 40 H 0.96997 * 120.00066 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47153 * 180.02562 * 24 13 12 42 42 H 1.08996 * 109.46952 * 300.00302 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8194 2.9161 -0.0001 6 8 2.9610 3.7728 -0.0005 7 7 5.1209 3.2662 -0.0002 8 6 5.4987 4.6816 -0.0003 9 1 4.7791 5.2498 0.5892 10 6 5.5086 5.2068 -1.4373 11 6 6.5186 4.4093 -2.2648 12 6 7.9134 4.5650 -1.6554 13 6 7.9034 4.0399 -0.2183 14 1 7.6224 2.9867 -0.2183 15 7 9.2390 4.1884 0.3651 16 6 10.1879 3.2230 0.1580 17 1 9.9515 2.3519 -0.4351 18 6 11.4532 3.3635 0.7112 19 7 11.7412 4.4248 1.4344 20 14 12.7474 2.0462 0.4293 21 1 13.0055 1.9095 -1.0267 22 1 14.0042 2.4310 1.1203 23 1 12.2614 0.7512 0.9695 24 6 6.8934 4.8373 0.6092 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.8340 0.9764 -0.8892 31 1 3.8333 0.9766 0.8907 32 1 5.8075 2.5810 -0.0003 33 1 4.5150 5.0959 -1.8715 34 1 5.7893 6.2600 -1.4374 35 1 6.5254 4.7831 -3.2887 36 1 6.2375 3.3562 -2.2648 37 1 8.1945 5.6181 -1.6554 38 1 8.6330 3.9973 -2.2451 39 1 9.4513 4.9706 0.8979 40 1 12.6255 4.5231 1.8207 41 1 6.8867 4.4635 1.6330 42 1 7.1745 5.8904 0.6091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714392567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:04 Heat of formation + Delta-G solvation = -109.874139 kcal Electronic energy + Delta-G solvation = -21177.967917 eV Core-core repulsion = 17963.762348 eV Total energy + Delta-G solvation = -3214.205569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26781 -39.52261 -38.38072 -36.11330 -34.45631 -32.94250 -32.43142 -31.10848 -29.58140 -28.15514 -25.66124 -23.67651 -23.37089 -22.60006 -22.07066 -20.11083 -19.17930 -18.28495 -17.74079 -17.39850 -16.88346 -16.42084 -16.20292 -15.82205 -15.51947 -15.08945 -15.05002 -14.82153 -14.11895 -13.85689 -13.78813 -13.48249 -13.28094 -13.06707 -13.01543 -12.86849 -12.74668 -12.30568 -12.24286 -12.15355 -12.06561 -11.93373 -11.57977 -11.44747 -10.99448 -10.83343 -10.80252 -10.64909 -10.03000 -8.96649 -7.90572 -5.18553 1.49849 1.51985 1.57879 1.60578 1.87472 2.58832 3.06087 3.42900 3.64160 3.81571 3.89567 3.93755 4.17591 4.20305 4.31297 4.32556 4.33140 4.37148 4.37635 4.52268 4.57090 4.68157 4.73561 4.81739 4.84662 4.97178 5.04365 5.11617 5.19165 5.24394 5.27761 5.38549 5.50375 5.52810 5.57053 5.67718 6.12219 6.31535 6.57632 7.24475 7.37747 8.14835 8.36651 9.32865 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.003868 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.183699 B = 7237.039698 C = 7980.037539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.400 6.400 4 C 0.044 3.956 5 C 0.511 3.489 6 O -0.573 6.573 7 N -0.709 5.709 8 C 0.160 3.840 9 H 0.078 0.922 10 C -0.122 4.122 11 C -0.104 4.104 12 C -0.128 4.128 13 C 0.177 3.823 14 H 0.051 0.949 15 N -0.738 5.738 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.969 3.031 21 H -0.280 1.280 22 H -0.301 1.301 23 H -0.276 1.276 24 C -0.120 4.120 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.411 0.589 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.063 0.937 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.963 -8.177 -5.008 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.320 6.320 4 C -0.035 4.035 5 C 0.298 3.702 6 O -0.452 6.452 7 N -0.363 5.363 8 C 0.055 3.945 9 H 0.096 0.904 10 C -0.161 4.161 11 C -0.142 4.142 12 C -0.168 4.168 13 C 0.069 3.931 14 H 0.068 0.932 15 N -0.377 5.377 16 C -0.366 4.366 17 H 0.097 0.903 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.798 3.202 21 H -0.206 1.206 22 H -0.227 1.227 23 H -0.202 1.202 24 C -0.159 4.159 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.249 0.751 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.619 -7.587 -5.052 20.730 hybrid contribution 1.681 -0.486 0.234 1.765 sum -16.938 -8.073 -4.819 19.373 Atomic orbital electron populations 1.21774 0.93187 1.03453 1.02434 1.22783 0.96264 0.82088 1.01689 1.87972 1.19588 1.28653 1.95778 1.22317 0.83472 0.92652 1.05086 1.20814 0.82433 0.91574 0.75355 1.90684 1.50623 1.53313 1.50618 1.46023 1.06819 1.08991 1.74452 1.20795 0.95170 0.81647 0.96890 0.90383 1.21849 0.99171 1.00442 0.94606 1.21403 0.93545 1.00478 0.98762 1.22116 0.96368 1.00491 0.97844 1.20380 0.84128 0.97203 0.91386 0.93160 1.42646 1.09201 1.24443 1.61404 1.19585 0.91955 1.00112 1.24923 0.90332 1.25517 1.00036 1.00089 1.01344 1.69808 1.21371 1.30600 1.40473 0.85279 0.78432 0.79000 0.77469 1.20603 1.22745 1.20196 1.21961 0.93033 1.01668 0.99246 0.92661 0.88592 0.92756 0.91577 0.91745 0.87540 0.87836 0.75132 0.92170 0.90479 0.91461 0.91676 0.93540 0.93879 0.79724 0.94237 0.91825 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.40 -9.43 9.87 -129.94 -1.28 -10.71 16 4 C 0.04 0.83 6.42 71.24 0.46 1.29 16 5 C 0.51 13.41 7.87 87.66 0.69 14.10 16 6 O -0.57 -20.34 16.16 16.02 0.26 -20.08 16 7 N -0.71 -16.77 4.23 -442.55 -1.87 -18.64 16 8 C 0.16 4.22 2.78 44.99 0.13 4.35 16 9 H 0.08 2.23 7.58 -2.39 -0.02 2.21 16 10 C -0.12 -3.06 5.60 30.59 0.17 -2.89 16 11 C -0.10 -2.61 5.77 30.59 0.18 -2.44 16 12 C -0.13 -4.15 5.50 30.60 0.17 -3.98 16 13 C 0.18 6.21 2.60 44.99 0.12 6.33 16 14 H 0.05 1.68 6.44 -2.39 -0.02 1.67 16 15 N -0.74 -34.90 5.12 -322.93 -1.65 -36.55 16 16 C -0.23 -12.28 9.93 84.03 0.83 -11.45 16 17 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 18 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 19 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 20 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 24 C -0.12 -3.61 5.08 30.59 0.16 -3.45 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 8.47 6.87 -92.70 -0.64 7.84 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.53 7.60 -2.39 -0.02 1.51 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.37 19.25 7.80 -92.71 -0.72 18.53 16 40 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -69.62 339.72 1.98 -67.64 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.36 Total: 31.79 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.58 Total: -2.15 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.24 Total: -113.24 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.02 Total: -30.80 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.62 1.98 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714392567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.237 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds