Wall clock time and date at job start Mon Mar 30 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46910 * 2 1 4 4 C 1.42904 * 114.00038 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47374 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99770 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00116 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00128 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47182 * 325.00516 * 8 7 5 10 10 C 1.52997 * 109.46983 * 85.00506 * 8 7 5 11 11 C 1.52996 * 109.47131 * 59.99859 * 10 8 7 12 12 C 1.53002 * 109.46972 * 60.00459 * 11 10 8 13 13 C 1.52997 * 109.46817 * 299.99733 * 12 11 10 14 14 H 1.09001 * 109.47502 * 300.00518 * 13 12 11 15 15 N 1.46500 * 109.47007 * 180.02562 * 13 12 11 16 16 C 1.36936 * 120.00035 * 85.00367 * 15 13 12 17 17 H 1.07997 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99597 * 180.02562 * 16 15 13 19 19 N 1.31625 * 119.99618 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00647 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47450 * 89.99561 * 20 18 16 22 22 H 1.48497 * 109.47342 * 210.00324 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99792 * 20 18 16 24 24 C 1.52999 * 109.47704 * 205.00617 * 8 7 5 25 25 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47416 * 299.99869 * 1 2 3 27 27 H 1.09004 * 109.47112 * 59.99991 * 1 2 3 28 28 H 1.08996 * 109.47416 * 240.00131 * 2 1 3 29 29 H 1.08995 * 109.46906 * 119.99904 * 2 1 3 30 30 H 1.09000 * 109.46886 * 59.99926 * 4 3 2 31 31 H 1.09006 * 109.47053 * 300.00046 * 4 3 2 32 32 H 0.97001 * 120.00193 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47289 * 299.99909 * 10 8 7 34 34 H 1.09000 * 109.47611 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47452 * 300.00000 * 11 10 8 36 36 H 1.09000 * 109.47054 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47070 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47407 * 59.99513 * 12 11 10 39 39 H 0.97002 * 120.00030 * 265.00025 * 15 13 12 40 40 H 0.97001 * 120.00319 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.47839 * 180.02562 * 24 8 7 42 42 H 1.09000 * 109.47160 * 59.99903 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9609 3.7730 0.0016 7 7 5.1209 3.2664 0.0023 8 6 5.4986 4.6818 0.0023 9 1 4.7795 5.2498 -0.5879 10 6 5.5074 5.2073 1.4392 11 6 6.5168 4.4100 2.2676 12 6 7.9120 4.5656 1.6592 13 6 7.9032 4.0402 0.2223 14 1 7.6221 2.9870 0.2222 15 7 9.2393 4.1886 -0.3601 16 6 10.1879 3.2232 -0.1522 17 1 9.9513 2.3526 0.4414 18 6 11.4540 3.3642 -0.7037 19 7 12.3660 2.4365 -0.5034 20 14 11.8635 4.8703 -1.7299 21 1 12.3996 5.9388 -0.8489 22 1 12.8817 4.5125 -2.7499 23 1 10.6346 5.3571 -2.4068 24 6 6.8937 4.8375 -0.6062 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9768 0.8909 32 1 5.8075 2.5812 0.0024 33 1 4.5135 5.0965 1.8727 34 1 5.7880 6.2605 1.4393 35 1 6.2358 3.3569 2.2676 36 1 6.5228 4.7841 3.2914 37 1 8.6313 3.9980 2.2496 38 1 8.1930 5.6187 1.6591 39 1 9.4519 4.9707 -0.8931 40 1 13.2506 2.5347 -0.8890 41 1 7.1750 5.8905 -0.6058 42 1 6.8875 4.4632 -1.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714392569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:08 Heat of formation + Delta-G solvation = -84.683713 kcal Electronic energy + Delta-G solvation = -21221.336013 eV Core-core repulsion = 18008.222782 eV Total energy + Delta-G solvation = -3213.113231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18625 -38.49381 -37.40267 -34.61779 -33.12145 -31.77973 -31.38817 -30.01708 -28.47031 -27.26240 -23.52845 -23.04382 -22.24275 -21.21064 -20.90579 -18.99417 -17.70210 -17.30773 -16.89530 -16.61283 -15.47306 -15.30363 -14.91046 -14.61805 -14.26762 -13.99681 -13.72110 -13.18593 -13.00818 -12.84211 -12.70933 -12.65139 -12.26463 -11.96425 -11.84791 -11.63779 -11.48761 -11.29392 -11.03042 -10.93456 -10.45497 -10.29324 -10.11515 -9.92629 -9.74716 -9.73780 -9.62106 -9.01011 -8.89600 -7.32419 -5.82216 -3.18064 2.62737 2.76506 3.33979 3.37098 3.42410 3.85910 4.54641 4.64333 4.75865 4.84801 4.93794 4.98377 5.01473 5.06696 5.07330 5.08893 5.38785 5.41186 5.46150 5.56953 5.58961 5.63428 5.74788 5.84696 5.85659 5.94007 6.00170 6.11274 6.21012 6.37201 6.39265 6.57639 6.60642 6.81672 6.83249 6.96355 7.54984 7.93122 8.25278 8.36845 9.15160 9.87980 10.07490 11.36003 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.003868 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.597483 B = 7237.194066 C = 7731.390069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.042 3.958 5 C 0.514 3.486 6 O -0.527 6.527 7 N -0.717 5.717 8 C 0.154 3.846 9 H 0.085 0.915 10 C -0.129 4.129 11 C -0.115 4.115 12 C -0.137 4.137 13 C 0.185 3.815 14 H 0.050 0.950 15 N -0.749 5.749 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.137 4.137 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.404 0.596 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.850 -1.736 2.039 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.038 4.038 5 C 0.299 3.701 6 O -0.402 6.402 7 N -0.372 5.372 8 C 0.050 3.950 9 H 0.103 0.897 10 C -0.167 4.167 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.075 3.925 14 H 0.068 0.932 15 N -0.391 5.391 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.176 4.176 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.240 0.760 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.460 -1.175 2.086 19.607 hybrid contribution 1.112 0.407 -0.685 1.368 sum -18.348 -0.768 1.401 18.417 Atomic orbital electron populations 1.21726 0.93482 1.02179 1.03397 1.22546 0.95900 0.83462 1.00291 1.88010 1.18631 1.26276 1.95462 1.22224 0.83805 0.94966 1.02783 1.20195 0.82888 0.90395 0.76614 1.90706 1.49451 1.51731 1.48355 1.46093 1.06738 1.09231 1.75153 1.20918 0.96367 0.80987 0.96761 0.89702 1.21913 0.99587 1.00006 0.95219 1.21495 0.95560 0.99868 0.98398 1.22249 0.95191 1.01507 0.98781 1.20127 0.84901 0.96810 0.90633 0.93204 1.42788 1.09423 1.24884 1.61998 1.19047 0.90704 1.00177 1.27470 0.89240 1.24677 0.96150 0.97777 1.00513 1.69700 1.04602 1.34425 1.49408 0.86549 0.77749 0.83672 0.80532 1.21114 1.21796 1.20298 1.22172 0.93282 1.02045 1.00098 0.91013 0.91732 0.91736 0.93138 0.93146 0.90169 0.90194 0.75977 0.91922 0.91142 0.92473 0.92659 0.91564 0.92631 0.80619 0.93036 0.90581 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.47 6.66 37.16 0.25 0.72 16 3 O -0.37 -4.55 9.88 -55.14 -0.54 -5.09 16 4 C 0.04 0.45 6.42 36.01 0.23 0.68 16 5 C 0.51 6.97 7.87 -10.99 -0.09 6.88 16 6 O -0.53 -9.28 16.16 -14.35 -0.23 -9.51 16 7 N -0.72 -8.85 4.23 -53.81 -0.23 -9.07 16 8 C 0.15 2.03 2.78 -67.93 -0.19 1.84 16 9 H 0.08 1.18 7.58 -51.93 -0.39 0.78 16 10 C -0.13 -1.65 5.60 -26.73 -0.15 -1.80 16 11 C -0.11 -1.52 5.77 -26.73 -0.15 -1.68 16 12 C -0.14 -2.21 5.50 -26.73 -0.15 -2.36 16 13 C 0.18 3.19 2.60 -67.93 -0.18 3.01 16 14 H 0.05 0.86 6.44 -51.93 -0.33 0.53 16 15 N -0.75 -16.61 4.93 -53.42 -0.26 -16.88 16 16 C -0.24 -6.56 10.41 -15.06 -0.16 -6.71 16 17 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 20 Si 0.88 21.58 27.74 -169.99 -4.71 16.87 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 24 C -0.14 -1.97 5.08 -26.73 -0.14 -2.11 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.40 4.52 6.87 -40.82 -0.28 4.24 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.36 7.97 5.66 -40.82 -0.23 7.74 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -33.12 336.61 -7.71 -40.83 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.14 Total: 7.87 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.43 Total: -2.24 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.28 Total: -53.80 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.78 Total: -14.60 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.12 -7.71 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714392569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.857 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds