Wall clock time and date at job start Mon Mar 30 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46910 * 2 1 4 4 C 1.42904 * 114.00038 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47374 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99770 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00116 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00128 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47182 * 325.00516 * 8 7 5 10 10 C 1.52997 * 109.46983 * 85.00506 * 8 7 5 11 11 C 1.52996 * 109.47131 * 59.99859 * 10 8 7 12 12 C 1.53002 * 109.46972 * 60.00459 * 11 10 8 13 13 C 1.52997 * 109.46817 * 299.99733 * 12 11 10 14 14 H 1.09001 * 109.47502 * 300.00518 * 13 12 11 15 15 N 1.46500 * 109.47007 * 180.02562 * 13 12 11 16 16 C 1.36936 * 120.00035 * 85.00367 * 15 13 12 17 17 H 1.07997 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99597 * 180.02562 * 16 15 13 19 19 N 1.31625 * 119.99618 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00647 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47450 * 89.99561 * 20 18 16 22 22 H 1.48497 * 109.47342 * 210.00324 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99792 * 20 18 16 24 24 C 1.52999 * 109.47704 * 205.00617 * 8 7 5 25 25 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47416 * 299.99869 * 1 2 3 27 27 H 1.09004 * 109.47112 * 59.99991 * 1 2 3 28 28 H 1.08996 * 109.47416 * 240.00131 * 2 1 3 29 29 H 1.08995 * 109.46906 * 119.99904 * 2 1 3 30 30 H 1.09000 * 109.46886 * 59.99926 * 4 3 2 31 31 H 1.09006 * 109.47053 * 300.00046 * 4 3 2 32 32 H 0.97001 * 120.00193 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47289 * 299.99909 * 10 8 7 34 34 H 1.09000 * 109.47611 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47452 * 300.00000 * 11 10 8 36 36 H 1.09000 * 109.47054 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47070 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47407 * 59.99513 * 12 11 10 39 39 H 0.97002 * 120.00030 * 265.00025 * 15 13 12 40 40 H 0.97001 * 120.00319 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.47839 * 180.02562 * 24 8 7 42 42 H 1.09000 * 109.47160 * 59.99903 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9609 3.7730 0.0016 7 7 5.1209 3.2664 0.0023 8 6 5.4986 4.6818 0.0023 9 1 4.7795 5.2498 -0.5879 10 6 5.5074 5.2073 1.4392 11 6 6.5168 4.4100 2.2676 12 6 7.9120 4.5656 1.6592 13 6 7.9032 4.0402 0.2223 14 1 7.6221 2.9870 0.2222 15 7 9.2393 4.1886 -0.3601 16 6 10.1879 3.2232 -0.1522 17 1 9.9513 2.3526 0.4414 18 6 11.4540 3.3642 -0.7037 19 7 12.3660 2.4365 -0.5034 20 14 11.8635 4.8703 -1.7299 21 1 12.3996 5.9388 -0.8489 22 1 12.8817 4.5125 -2.7499 23 1 10.6346 5.3571 -2.4068 24 6 6.8937 4.8375 -0.6062 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9768 0.8909 32 1 5.8075 2.5812 0.0024 33 1 4.5135 5.0965 1.8727 34 1 5.7880 6.2605 1.4393 35 1 6.2358 3.3569 2.2676 36 1 6.5228 4.7841 3.2914 37 1 8.6313 3.9980 2.2496 38 1 8.1930 5.6187 1.6591 39 1 9.4519 4.9707 -0.8931 40 1 13.2506 2.5347 -0.8890 41 1 7.1750 5.8905 -0.6058 42 1 6.8875 4.4632 -1.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714392569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:07 Heat of formation + Delta-G solvation = -107.173044 kcal Electronic energy + Delta-G solvation = -21222.311223 eV Core-core repulsion = 18008.222782 eV Total energy + Delta-G solvation = -3214.088441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28186 -39.56109 -38.40174 -36.22966 -34.46501 -33.24524 -32.44590 -31.14571 -29.98642 -28.16969 -25.36750 -23.68304 -23.40862 -22.53100 -22.11592 -20.32842 -19.49557 -18.33054 -17.76777 -17.40319 -16.78167 -16.54404 -16.28356 -15.85943 -15.38744 -15.33605 -15.01531 -14.67532 -14.29169 -14.02998 -13.85454 -13.62527 -13.29034 -13.07439 -13.05283 -12.97985 -12.84848 -12.39063 -12.30637 -12.15957 -11.95620 -11.80571 -11.62846 -11.51646 -11.03216 -10.87482 -10.82205 -10.65801 -10.03633 -9.27212 -7.99168 -5.31709 1.40568 1.42907 1.50217 1.59768 1.87150 2.51292 3.05255 3.32820 3.46502 3.76624 3.86902 3.92443 4.16517 4.17331 4.22187 4.28624 4.31732 4.34383 4.37131 4.51718 4.53735 4.66371 4.70658 4.79867 4.84235 4.94184 5.03866 5.09700 5.17159 5.21708 5.27282 5.37805 5.49058 5.51208 5.64267 5.81982 6.11126 6.25222 6.56064 7.11872 7.23436 7.88856 8.06580 9.22275 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.003868 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.597483 B = 7237.194066 C = 7731.390069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.400 6.400 4 C 0.043 3.957 5 C 0.512 3.488 6 O -0.572 6.572 7 N -0.710 5.710 8 C 0.158 3.842 9 H 0.082 0.918 10 C -0.122 4.122 11 C -0.105 4.105 12 C -0.129 4.129 13 C 0.179 3.821 14 H 0.050 0.950 15 N -0.752 5.752 16 C -0.222 4.222 17 H 0.060 0.940 18 C -0.066 4.066 19 N -0.986 5.986 20 Si 0.951 3.049 21 H -0.283 1.283 22 H -0.301 1.301 23 H -0.249 1.249 24 C -0.124 4.124 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.411 0.589 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.364 0.636 40 H 0.256 0.744 41 H 0.086 0.914 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.188 -1.120 1.735 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.319 6.319 4 C -0.037 4.037 5 C 0.299 3.701 6 O -0.451 6.451 7 N -0.365 5.365 8 C 0.054 3.946 9 H 0.100 0.900 10 C -0.161 4.161 11 C -0.143 4.143 12 C -0.169 4.169 13 C 0.071 3.929 14 H 0.068 0.932 15 N -0.395 5.395 16 C -0.353 4.353 17 H 0.078 0.922 18 C -0.257 4.257 19 N -0.637 5.637 20 Si 0.779 3.221 21 H -0.209 1.209 22 H -0.228 1.228 23 H -0.174 1.174 24 C -0.163 4.163 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.248 0.752 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.197 0.803 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.846 -0.553 1.793 20.930 hybrid contribution 1.453 0.140 -0.518 1.549 sum -19.393 -0.413 1.275 19.439 Atomic orbital electron populations 1.21770 0.93117 1.03457 1.02462 1.22783 0.96310 0.82106 1.01651 1.87970 1.19552 1.28613 1.95774 1.22325 0.83483 0.92860 1.04995 1.20763 0.82488 0.91467 0.75361 1.90684 1.50590 1.53228 1.50580 1.46053 1.06783 1.09150 1.74476 1.20834 0.95330 0.81534 0.96950 0.89983 1.21859 0.99051 1.00595 0.94563 1.21404 0.93631 1.00394 0.98915 1.22094 0.96401 1.00915 0.97514 1.20374 0.83330 0.97638 0.91575 0.93238 1.42824 1.10396 1.23903 1.62354 1.19021 0.91411 0.99750 1.25095 0.92158 1.25460 0.96316 1.01096 1.02863 1.69878 1.05054 1.37056 1.51678 0.85460 0.78125 0.79822 0.78663 1.20924 1.22800 1.17352 1.22028 0.92800 1.02060 0.99414 0.88622 0.92638 0.92692 0.91760 0.91685 0.87883 0.87764 0.75193 0.92319 0.89956 0.92107 0.91441 0.94260 0.92480 0.80255 0.93548 0.89514 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.40 -9.40 9.88 -129.94 -1.28 -10.69 16 4 C 0.04 0.81 6.42 71.24 0.46 1.27 16 5 C 0.51 13.12 7.87 87.66 0.69 13.81 16 6 O -0.57 -19.73 16.16 15.99 0.26 -19.47 16 7 N -0.71 -16.13 4.23 -442.54 -1.87 -18.00 16 8 C 0.16 3.82 2.78 44.99 0.13 3.94 16 9 H 0.08 2.12 7.58 -2.39 -0.02 2.10 16 10 C -0.12 -2.83 5.60 30.59 0.17 -2.66 16 11 C -0.11 -2.55 5.77 30.59 0.18 -2.38 16 12 C -0.13 -3.97 5.50 30.59 0.17 -3.80 16 13 C 0.18 5.86 2.60 44.99 0.12 5.98 16 14 H 0.05 1.64 6.44 -2.39 -0.02 1.62 16 15 N -0.75 -32.28 4.93 -322.94 -1.59 -33.87 16 16 C -0.22 -11.92 10.41 84.03 0.87 -11.05 16 17 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 18 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 19 N -0.99 -61.82 13.97 21.65 0.30 -61.51 16 20 Si 0.95 44.26 27.74 68.60 1.90 46.16 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 24 C -0.12 -3.26 5.08 30.60 0.16 -3.11 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.83 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.41 8.33 6.87 -92.71 -0.64 7.69 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.44 7.60 -2.39 -0.02 1.42 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.36 15.17 5.66 -92.71 -0.52 14.64 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -72.36 336.61 2.12 -70.24 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.22 Total: 28.58 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 4.62 Total: -1.43 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -3.16 Total: -113.39 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.02 Total: -30.16 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -72.36 2.12 -70.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714392569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.934 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds