Wall clock time and date at job start Mon Mar 30 2020 01:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.46943 * 2 1 4 4 C 1.42904 * 114.00041 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47250 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99743 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99964 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00146 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46790 * 35.00133 * 8 7 5 10 10 C 1.52996 * 109.47433 * 275.00199 * 8 7 5 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46925 * 59.99873 * 11 10 8 13 13 C 1.52996 * 109.47389 * 299.99590 * 12 11 10 14 14 H 1.08999 * 109.47454 * 300.00556 * 13 12 11 15 15 N 1.46499 * 109.47169 * 180.02562 * 13 12 11 16 16 C 1.36931 * 120.00122 * 85.00412 * 15 13 12 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99535 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 180.27849 * 18 16 15 21 21 H 1.48501 * 109.46922 * 269.71949 * 20 18 16 22 22 H 1.48496 * 109.47354 * 29.72145 * 20 18 16 23 23 H 1.48501 * 109.47428 * 149.72253 * 20 18 16 24 24 C 1.53005 * 109.47072 * 154.99894 * 8 7 5 25 25 H 1.09003 * 109.47258 * 59.99988 * 1 2 3 26 26 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47334 * 300.00395 * 1 2 3 28 28 H 1.08993 * 109.47533 * 240.00103 * 2 1 3 29 29 H 1.08997 * 109.46996 * 119.99642 * 2 1 3 30 30 H 1.09007 * 109.46744 * 59.99939 * 4 3 2 31 31 H 1.09004 * 109.47047 * 300.00282 * 4 3 2 32 32 H 0.97005 * 120.00000 * 359.97438 * 7 5 4 33 33 H 1.08999 * 109.47079 * 299.99758 * 10 8 7 34 34 H 1.09005 * 109.46772 * 59.99649 * 10 8 7 35 35 H 1.08995 * 109.47084 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.46935 * 299.99919 * 11 10 8 37 37 H 1.09001 * 109.46971 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.47276 * 60.00256 * 12 11 10 39 39 H 0.97001 * 119.99790 * 264.99929 * 15 13 12 40 40 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.47117 * 60.00440 * 24 8 7 42 42 H 1.09002 * 109.47054 * 299.99825 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9609 3.7729 0.0016 7 7 5.1208 3.2664 0.0013 8 6 5.4986 4.6818 0.0012 9 1 4.7789 5.2499 0.5907 10 6 5.5087 5.2071 -1.4357 11 6 5.9026 6.6855 -1.4356 12 6 7.2970 6.8417 -0.8257 13 6 7.2869 6.3166 0.6113 14 1 6.5669 6.8843 1.2006 15 7 8.6220 6.4667 1.1955 16 6 8.9879 7.6540 1.7713 17 1 8.2921 8.4796 1.7951 18 6 10.2530 7.7964 2.3243 19 7 11.1008 6.7900 2.2957 20 14 10.7494 9.4136 3.1167 21 1 11.3743 10.2933 2.0965 22 1 9.5462 10.0808 3.6756 23 1 11.7222 9.1523 4.2077 24 6 6.8932 4.8375 0.6110 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8333 0.9768 0.8908 32 1 5.8074 2.5811 0.0013 33 1 6.2284 4.6390 -2.0251 34 1 4.5151 5.0961 -1.8700 35 1 5.9094 7.0598 -2.4593 36 1 5.1826 7.2533 -0.8463 37 1 7.5775 7.8950 -0.8252 38 1 8.0170 6.2739 -1.4150 39 1 9.2467 5.7250 1.1745 40 1 11.9849 6.8894 2.6826 41 1 7.6129 4.2694 0.0216 42 1 6.8859 4.4634 1.6348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714392570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:10 Heat of formation + Delta-G solvation = -91.210165 kcal Electronic energy + Delta-G solvation = -20771.068004 eV Core-core repulsion = 17557.671765 eV Total energy + Delta-G solvation = -3213.396239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04372 -38.39300 -37.44599 -34.65598 -33.35007 -31.83847 -31.12651 -29.78099 -27.99812 -27.07138 -23.73556 -23.10728 -22.08830 -21.44398 -20.34364 -19.40973 -17.43304 -17.18603 -16.79700 -16.67148 -15.85056 -15.03273 -14.84475 -14.40216 -14.11692 -13.90202 -13.59336 -13.24955 -13.20807 -13.00827 -12.76958 -12.60249 -12.13679 -12.06606 -11.69938 -11.55737 -10.99770 -10.93220 -10.87122 -10.71990 -10.34750 -10.26495 -10.16986 -10.01500 -9.99826 -9.68639 -9.54079 -8.98459 -8.86228 -6.96441 -5.77218 -3.05688 2.58344 2.69784 3.43732 3.49276 3.50632 3.78564 4.58062 4.58456 4.69337 4.80368 4.92525 4.93683 5.00307 5.01794 5.11404 5.32348 5.34714 5.50647 5.58263 5.61106 5.69272 5.75190 5.81185 5.88163 5.97858 6.03179 6.15155 6.30948 6.33398 6.52063 6.53207 6.62498 6.73020 6.78517 6.97184 7.12789 7.49638 7.70959 8.21464 8.41657 9.52832 10.10036 10.44857 11.45561 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036426 B = 0.003104 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.489760 B = 9018.541504 C = 9367.094989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.512 3.488 6 O -0.521 6.521 7 N -0.723 5.723 8 C 0.150 3.850 9 H 0.088 0.912 10 C -0.124 4.124 11 C -0.115 4.115 12 C -0.137 4.137 13 C 0.183 3.817 14 H 0.049 0.951 15 N -0.724 5.724 16 C -0.236 4.236 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.292 1.292 24 C -0.129 4.129 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.399 0.601 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 -14.485 -7.099 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.296 3.704 6 O -0.395 6.395 7 N -0.375 5.375 8 C 0.046 3.954 9 H 0.106 0.894 10 C -0.163 4.163 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.073 3.927 14 H 0.067 0.933 15 N -0.365 5.365 16 C -0.367 4.367 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.207 1.207 23 H -0.218 1.218 24 C -0.168 4.168 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.835 -13.529 -6.982 21.966 hybrid contribution 1.212 -0.027 0.365 1.266 sum -14.622 -13.557 -6.617 21.009 Atomic orbital electron populations 1.21732 0.93415 1.02197 1.03513 1.22545 0.96001 0.83435 1.00165 1.88032 1.18569 1.26270 1.95423 1.22216 0.83925 0.94972 1.02515 1.20207 0.82946 0.90384 0.76823 1.90733 1.49337 1.51696 1.47777 1.46059 1.06618 1.09270 1.75593 1.21042 0.97318 0.80059 0.96986 0.89404 1.21884 1.01164 0.97037 0.96189 1.21486 0.98338 0.95011 1.00515 1.22289 0.94691 1.02030 0.98696 1.20112 0.88981 0.91501 0.92140 0.93328 1.42400 1.10997 1.14498 1.68575 1.19249 0.97310 0.90974 1.29202 0.91136 1.24739 0.96741 0.97697 1.01891 1.69663 1.07195 1.30378 1.51060 0.86197 0.78047 0.83231 0.78787 1.21752 1.20741 1.21816 1.22102 0.94038 0.99732 1.00897 0.91694 0.91002 0.91643 0.93229 0.93172 0.90374 0.90286 0.76702 0.92053 0.92172 0.92489 0.92148 0.91882 0.92661 0.78351 0.93564 0.91677 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.36 -4.33 9.88 -55.14 -0.54 -4.87 16 4 C 0.04 0.42 6.42 36.00 0.23 0.65 16 5 C 0.51 6.75 7.87 -10.99 -0.09 6.66 16 6 O -0.52 -9.35 16.16 -14.36 -0.23 -9.58 16 7 N -0.72 -8.37 5.08 -53.81 -0.27 -8.64 16 8 C 0.15 2.11 2.45 -67.93 -0.17 1.95 16 9 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 10 C -0.12 -1.70 5.49 -26.73 -0.15 -1.84 16 11 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 12 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 13 C 0.18 3.55 2.77 -67.90 -0.19 3.36 16 14 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -17.77 5.12 -53.40 -0.27 -18.05 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C -0.13 -2.01 4.86 -26.70 -0.13 -2.14 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.40 3.41 8.60 -40.82 -0.35 3.06 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -33.44 344.16 -8.21 -41.66 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.37 Total: 7.11 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.41 Total: -2.92 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.18 Total: -53.94 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.78 Total: -14.45 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.44 -8.21 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714392570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.555 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds