Wall clock time and date at job start Mon Mar 30 2020 00:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47271 * 2 1 4 4 C 1.36938 * 119.99996 * 263.95869 * 3 2 1 5 5 H 1.08003 * 120.00457 * 142.96439 * 4 3 2 6 6 C 1.38809 * 119.99872 * 322.96529 * 4 3 2 7 7 N 1.31620 * 120.00567 * 158.60086 * 6 4 3 8 8 Si 1.86809 * 120.00089 * 338.59496 * 6 4 3 9 9 H 1.48496 * 109.46736 * 91.78759 * 8 6 4 10 10 H 1.48496 * 109.47179 * 211.79015 * 8 6 4 11 11 H 1.48500 * 109.46856 * 331.78836 * 8 6 4 12 12 C 1.46501 * 120.00270 * 83.95095 * 3 2 1 13 13 C 1.53005 * 109.46656 * 89.99889 * 12 3 2 14 14 N 1.46501 * 109.46656 * 179.97438 * 13 12 3 15 15 C 1.34781 * 119.99434 * 180.02562 * 14 13 12 16 16 O 1.21275 * 120.00497 * 355.80917 * 15 14 13 17 17 C 1.50700 * 119.99735 * 176.07363 * 15 14 13 18 18 C 1.52995 * 115.55607 * 278.47471 * 17 15 14 19 19 O 1.42899 * 109.47210 * 304.70464 * 18 17 15 20 20 C 1.42899 * 114.00043 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49765 * 132.76182 * 17 15 14 22 22 C 1.53000 * 60.00201 * 252.51757 * 21 17 15 23 23 H 1.09000 * 109.47063 * 300.00015 * 1 2 3 24 24 H 1.09005 * 109.46938 * 60.00263 * 1 2 3 25 25 H 1.09001 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47063 * 239.99985 * 2 1 3 27 27 H 1.09004 * 109.47076 * 120.00268 * 2 1 3 28 28 H 0.96990 * 120.00640 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47188 * 330.00665 * 12 3 2 30 30 H 1.09000 * 109.47599 * 210.00038 * 12 3 2 31 31 H 1.09008 * 109.46759 * 60.00650 * 13 12 3 32 32 H 1.08995 * 109.47579 * 300.00684 * 13 12 3 33 33 H 0.96994 * 120.00311 * 0.02562 * 14 13 12 34 34 H 1.09011 * 109.47005 * 64.70525 * 18 17 15 35 35 H 1.08999 * 109.47715 * 184.70017 * 18 17 15 36 36 H 1.09004 * 109.47109 * 299.99790 * 20 19 18 37 37 H 1.08996 * 109.47550 * 60.00047 * 20 19 18 38 38 H 1.09003 * 109.46752 * 179.97438 * 20 19 18 39 39 H 1.09005 * 117.49606 * 0.02562 * 21 17 15 40 40 H 1.09001 * 117.49847 * 145.02112 * 21 17 15 41 41 H 1.08998 * 117.49260 * 252.50939 * 22 21 17 42 42 H 1.08995 * 117.51776 * 107.48338 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3643 1.9851 -1.1793 5 1 2.1511 3.0327 -1.3325 6 6 2.9890 1.2508 -2.1780 7 7 2.9479 1.6682 -3.4255 8 14 3.8884 -0.3300 -1.7513 9 1 2.9582 -1.4799 -1.8842 10 1 5.0357 -0.5119 -2.6763 11 1 4.3860 -0.2547 -0.3542 12 6 2.1365 2.1164 1.2616 13 6 3.5302 1.8941 1.8528 14 7 3.6485 2.6298 3.1141 15 6 4.7975 2.5815 3.8171 16 8 5.7062 1.8694 3.4457 17 6 4.9508 3.4078 5.0680 18 6 5.3273 4.8743 4.8482 19 8 6.5219 4.9475 4.0674 20 6 6.9624 6.2809 3.8026 21 6 5.5122 2.7122 6.3097 22 6 4.0294 3.0838 6.2458 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.3848 1.1553 -4.1233 29 1 1.3831 1.7580 1.9630 30 1 1.9853 3.1801 1.0779 31 1 4.2837 2.2525 1.1514 32 1 3.6815 0.8304 2.0365 33 1 2.9001 3.1516 3.4433 34 1 4.5183 5.3824 4.3232 35 1 5.4933 5.3553 5.8121 36 1 6.1873 6.8178 3.2557 37 1 7.1622 6.7914 4.7446 38 1 7.8740 6.2505 3.2057 39 1 5.7711 1.6570 6.2217 40 1 6.1503 3.2994 6.9702 41 1 3.6920 3.9155 6.8643 42 1 3.3123 2.2734 6.1157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714587250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:24 Heat of formation + Delta-G solvation = -32.492488 kcal Electronic energy + Delta-G solvation = -21306.730783 eV Core-core repulsion = 18095.880733 eV Total energy + Delta-G solvation = -3210.850049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02307 -37.90960 -36.70726 -36.17885 -34.25649 -31.75316 -30.28882 -28.55608 -27.76049 -25.79763 -24.29998 -23.14316 -22.69436 -22.09128 -20.33423 -19.27062 -17.29391 -16.70325 -16.31882 -16.00228 -15.68741 -15.48866 -15.26437 -14.55923 -14.43990 -14.10905 -13.55160 -13.27795 -12.90065 -12.77348 -12.70969 -12.28441 -12.05065 -11.80167 -11.66370 -11.55210 -11.32514 -11.23193 -10.89959 -10.81952 -10.48566 -10.42195 -10.23903 -9.80301 -9.72891 -9.53622 -9.40589 -8.63484 -8.52380 -6.91757 -6.00073 -3.43346 2.87294 3.12380 3.32339 3.43815 3.51286 3.58057 3.80853 4.46969 4.52912 4.64487 4.70892 4.89194 5.03287 5.10181 5.18105 5.25101 5.33436 5.34772 5.37691 5.55408 5.58117 5.67583 5.76519 5.84737 5.88599 5.92534 6.16867 6.24012 6.32105 6.48275 6.63077 6.70572 6.79054 6.91399 7.00291 7.04360 7.83512 8.03883 8.35072 8.55803 8.95407 9.69099 10.07448 11.15231 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.004713 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.410171 B = 5939.604503 C = 6452.793702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 N -0.600 5.600 4 C -0.271 4.271 5 H 0.080 0.920 6 C 0.038 3.962 7 N -0.900 5.900 8 Si 0.877 3.123 9 H -0.285 1.285 10 H -0.301 1.301 11 H -0.266 1.266 12 C 0.144 3.856 13 C 0.094 3.906 14 N -0.722 5.722 15 C 0.550 3.450 16 O -0.529 6.529 17 C -0.158 4.158 18 C 0.107 3.893 19 O -0.379 6.379 20 C 0.031 3.969 21 C -0.140 4.140 22 C -0.156 4.156 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.395 0.605 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 6.234 19.973 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.001 3.999 3 N -0.322 5.322 4 C -0.400 4.400 5 H 0.098 0.902 6 C -0.163 4.163 7 N -0.540 5.540 8 Si 0.707 3.293 9 H -0.213 1.213 10 H -0.229 1.229 11 H -0.191 1.191 12 C 0.016 3.984 13 C -0.032 4.032 14 N -0.373 5.373 15 C 0.334 3.666 16 O -0.405 6.405 17 C -0.161 4.161 18 C 0.030 3.970 19 O -0.297 6.297 20 C -0.065 4.065 21 C -0.177 4.177 22 C -0.194 4.194 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.228 0.772 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.221 5.531 19.389 20.200 hybrid contribution 0.183 -0.338 0.246 0.456 sum 1.404 5.193 19.635 20.359 Atomic orbital electron populations 1.22221 0.98815 0.99484 1.01602 1.21223 0.92762 0.86483 0.99454 1.44097 1.74338 1.11460 1.02309 1.18783 1.34203 0.97050 0.89928 0.90198 1.25459 0.97381 0.98104 0.95338 1.69841 1.44359 1.40448 0.99385 0.87005 0.79646 0.83845 0.78826 1.21280 1.22884 1.19053 1.21045 0.91983 0.97240 0.88112 1.22412 1.01928 0.95750 0.83086 1.46059 1.15078 1.51734 1.24433 1.19236 0.82408 0.81503 0.83460 1.90699 1.40251 1.40182 1.69352 1.21378 1.08241 0.96110 0.90409 1.21834 0.87830 0.92187 0.95107 1.88043 1.42172 1.26699 1.72791 1.22762 1.00182 0.83770 0.99813 1.22975 0.95687 1.02027 0.97023 1.23112 0.94123 1.03793 0.98333 0.93877 0.92197 0.94198 0.92150 0.94732 0.92626 0.93741 0.92458 0.91082 0.92554 0.77169 0.92368 0.92458 0.93889 0.94248 0.89425 0.87890 0.87871 0.87740 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.23 37.16 0.38 -2.62 16 2 C 0.13 2.73 4.99 -4.04 -0.02 2.71 16 3 N -0.60 -13.98 2.10 -173.23 -0.36 -14.34 16 4 C -0.27 -7.50 9.93 -15.06 -0.15 -7.65 16 5 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.04 1.10 5.29 -17.43 -0.09 1.01 16 7 N -0.90 -27.55 13.97 55.49 0.78 -26.77 16 8 Si 0.88 22.83 25.09 -169.99 -4.27 18.56 16 9 H -0.28 -7.11 6.52 56.52 0.37 -6.74 16 10 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 11 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.14 2.71 5.80 -4.04 -0.02 2.69 16 13 C 0.09 1.82 6.00 -4.04 -0.02 1.79 16 14 N -0.72 -11.16 5.55 -60.29 -0.33 -11.49 16 15 C 0.55 9.26 6.73 -10.98 -0.07 9.18 16 16 O -0.53 -11.59 17.02 5.56 0.09 -11.50 16 17 C -0.16 -1.92 2.19 -155.66 -0.34 -2.26 16 18 C 0.11 1.18 5.82 37.15 0.22 1.39 16 19 O -0.38 -5.35 10.44 -35.23 -0.37 -5.71 16 20 C 0.03 0.31 11.01 101.05 1.11 1.43 16 21 C -0.14 -1.45 9.86 -26.73 -0.26 -1.72 16 22 C -0.16 -1.31 9.95 -26.73 -0.27 -1.58 16 23 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.45 3.34 -51.93 -0.17 1.28 16 27 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 30 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 31 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.40 4.66 8.48 -40.82 -0.35 4.31 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -34.78 349.06 -6.03 -40.81 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.28 Total: 0.81 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 0.45 Total: 4.38 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.08 Total: -52.60 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.27 Total: -17.21 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.27 Total: 18.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.78 -6.03 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714587250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.315 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds