Wall clock time and date at job start Mon Mar 30 2020 00:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47271 * 2 1 4 4 C 1.36938 * 119.99996 * 263.95869 * 3 2 1 5 5 H 1.08003 * 120.00457 * 142.96439 * 4 3 2 6 6 C 1.38809 * 119.99872 * 322.96529 * 4 3 2 7 7 N 1.31620 * 120.00567 * 158.60086 * 6 4 3 8 8 Si 1.86809 * 120.00089 * 338.59496 * 6 4 3 9 9 H 1.48496 * 109.46736 * 91.78759 * 8 6 4 10 10 H 1.48496 * 109.47179 * 211.79015 * 8 6 4 11 11 H 1.48500 * 109.46856 * 331.78836 * 8 6 4 12 12 C 1.46501 * 120.00270 * 83.95095 * 3 2 1 13 13 C 1.53005 * 109.46656 * 89.99889 * 12 3 2 14 14 N 1.46501 * 109.46656 * 179.97438 * 13 12 3 15 15 C 1.34781 * 119.99434 * 180.02562 * 14 13 12 16 16 O 1.21275 * 120.00497 * 355.80917 * 15 14 13 17 17 C 1.50700 * 119.99735 * 176.07363 * 15 14 13 18 18 C 1.52995 * 115.55607 * 278.47471 * 17 15 14 19 19 O 1.42899 * 109.47210 * 304.70464 * 18 17 15 20 20 C 1.42899 * 114.00043 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49765 * 132.76182 * 17 15 14 22 22 C 1.53000 * 60.00201 * 252.51757 * 21 17 15 23 23 H 1.09000 * 109.47063 * 300.00015 * 1 2 3 24 24 H 1.09005 * 109.46938 * 60.00263 * 1 2 3 25 25 H 1.09001 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47063 * 239.99985 * 2 1 3 27 27 H 1.09004 * 109.47076 * 120.00268 * 2 1 3 28 28 H 0.96990 * 120.00640 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47188 * 330.00665 * 12 3 2 30 30 H 1.09000 * 109.47599 * 210.00038 * 12 3 2 31 31 H 1.09008 * 109.46759 * 60.00650 * 13 12 3 32 32 H 1.08995 * 109.47579 * 300.00684 * 13 12 3 33 33 H 0.96994 * 120.00311 * 0.02562 * 14 13 12 34 34 H 1.09011 * 109.47005 * 64.70525 * 18 17 15 35 35 H 1.08999 * 109.47715 * 184.70017 * 18 17 15 36 36 H 1.09004 * 109.47109 * 299.99790 * 20 19 18 37 37 H 1.08996 * 109.47550 * 60.00047 * 20 19 18 38 38 H 1.09003 * 109.46752 * 179.97438 * 20 19 18 39 39 H 1.09005 * 117.49606 * 0.02562 * 21 17 15 40 40 H 1.09001 * 117.49847 * 145.02112 * 21 17 15 41 41 H 1.08998 * 117.49260 * 252.50939 * 22 21 17 42 42 H 1.08995 * 117.51776 * 107.48338 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3643 1.9851 -1.1793 5 1 2.1511 3.0327 -1.3325 6 6 2.9890 1.2508 -2.1780 7 7 2.9479 1.6682 -3.4255 8 14 3.8884 -0.3300 -1.7513 9 1 2.9582 -1.4799 -1.8842 10 1 5.0357 -0.5119 -2.6763 11 1 4.3860 -0.2547 -0.3542 12 6 2.1365 2.1164 1.2616 13 6 3.5302 1.8941 1.8528 14 7 3.6485 2.6298 3.1141 15 6 4.7975 2.5815 3.8171 16 8 5.7062 1.8694 3.4457 17 6 4.9508 3.4078 5.0680 18 6 5.3273 4.8743 4.8482 19 8 6.5219 4.9475 4.0674 20 6 6.9624 6.2809 3.8026 21 6 5.5122 2.7122 6.3097 22 6 4.0294 3.0838 6.2458 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.3848 1.1553 -4.1233 29 1 1.3831 1.7580 1.9630 30 1 1.9853 3.1801 1.0779 31 1 4.2837 2.2525 1.1514 32 1 3.6815 0.8304 2.0365 33 1 2.9001 3.1516 3.4433 34 1 4.5183 5.3824 4.3232 35 1 5.4933 5.3553 5.8121 36 1 6.1873 6.8178 3.2557 37 1 7.1622 6.7914 4.7446 38 1 7.8740 6.2505 3.2057 39 1 5.7711 1.6570 6.2217 40 1 6.1503 3.2994 6.9702 41 1 3.6920 3.9155 6.8643 42 1 3.3123 2.2734 6.1157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714587250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:24 Heat of formation + Delta-G solvation = -58.605641 kcal Electronic energy + Delta-G solvation = -21307.863134 eV Core-core repulsion = 18095.880733 eV Total energy + Delta-G solvation = -3211.982400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19420 -38.97850 -38.31859 -37.22149 -35.81580 -33.87489 -31.85280 -29.71946 -29.12719 -26.68065 -25.97971 -24.72734 -23.61744 -23.26945 -22.04421 -20.55661 -18.75367 -18.27504 -17.36384 -17.27289 -17.11338 -16.82561 -16.46353 -15.98148 -15.82975 -15.32715 -15.15218 -14.87061 -14.53477 -14.35610 -13.85582 -13.52003 -13.41455 -13.26692 -13.10042 -12.82527 -12.68778 -12.48791 -12.36905 -12.33411 -11.94233 -11.73940 -11.65724 -11.39765 -11.27988 -10.83399 -10.65736 -10.56990 -10.10998 -8.87759 -8.24217 -5.62126 1.22543 1.37827 1.46669 1.59485 2.08845 2.36202 2.43150 3.03161 3.03654 3.37893 3.67285 3.77002 3.92719 4.07106 4.16483 4.23963 4.29632 4.34794 4.47510 4.51159 4.60070 4.62917 4.66036 4.72308 4.72841 4.81990 4.84127 4.94209 4.96522 5.06671 5.12610 5.18713 5.19677 5.44977 5.50383 5.91721 6.13928 6.22794 6.60249 6.94573 7.29198 7.58691 7.99039 8.95503 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.004713 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.410171 B = 5939.604503 C = 6452.793702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.116 3.884 3 N -0.613 5.613 4 C -0.252 4.252 5 H 0.051 0.949 6 C -0.015 4.015 7 N -0.946 5.946 8 Si 0.932 3.068 9 H -0.265 1.265 10 H -0.312 1.312 11 H -0.272 1.272 12 C 0.148 3.852 13 C 0.110 3.890 14 N -0.706 5.706 15 C 0.544 3.456 16 O -0.591 6.591 17 C -0.180 4.180 18 C 0.104 3.896 19 O -0.424 6.424 20 C 0.027 3.973 21 C -0.149 4.149 22 C -0.117 4.117 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.263 0.737 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.039 0.961 33 H 0.417 0.583 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 6.617 23.514 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 N -0.336 5.336 4 C -0.382 4.382 5 H 0.068 0.932 6 C -0.211 4.211 7 N -0.590 5.590 8 Si 0.762 3.238 9 H -0.192 1.192 10 H -0.241 1.241 11 H -0.197 1.197 12 C 0.022 3.978 13 C -0.017 4.017 14 N -0.358 5.358 15 C 0.331 3.669 16 O -0.471 6.471 17 C -0.184 4.184 18 C 0.028 3.972 19 O -0.344 6.344 20 C -0.069 4.069 21 C -0.186 4.186 22 C -0.154 4.154 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.254 0.746 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.486 5.928 22.992 23.749 hybrid contribution 0.668 -0.390 -0.769 1.090 sum 0.182 5.538 22.223 22.904 Atomic orbital electron populations 1.22083 0.96042 1.01319 1.01554 1.21355 0.95002 0.85233 0.99221 1.44240 1.74614 1.12301 1.02447 1.18717 1.32230 0.95885 0.91409 0.93152 1.25973 0.98744 1.01140 0.95286 1.69945 1.46445 1.42304 1.00317 0.86099 0.78370 0.81764 0.77572 1.19186 1.24126 1.19699 1.21142 0.92436 0.97239 0.86975 1.21930 1.00848 0.94915 0.84001 1.45816 1.15927 1.51219 1.22857 1.20170 0.81360 0.80836 0.84579 1.90664 1.42209 1.42947 1.71265 1.21367 1.12025 0.96210 0.88775 1.22065 0.87124 0.91408 0.96588 1.87991 1.43684 1.28933 1.73778 1.22899 1.00136 0.82605 1.01270 1.23083 0.98189 1.01031 0.96327 1.23307 0.92646 1.04493 0.94926 0.91481 0.94624 0.91468 0.94768 0.92495 0.92835 0.89527 0.91975 0.95682 0.94255 0.74587 0.91418 0.88945 0.93350 0.91624 0.89922 0.90090 0.85771 0.83887 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 10.23 71.98 0.74 -4.40 16 2 C 0.12 4.80 4.99 86.38 0.43 5.23 16 3 N -0.61 -28.05 2.10 -701.99 -1.47 -29.52 16 4 C -0.25 -14.22 9.93 84.03 0.83 -13.38 16 5 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 6 C -0.01 -0.87 5.29 84.86 0.45 -0.42 16 7 N -0.95 -59.87 13.97 21.65 0.30 -59.57 16 8 Si 0.93 48.43 25.09 68.60 1.72 50.16 16 9 H -0.27 -12.78 6.52 99.48 0.65 -12.13 16 10 H -0.31 -16.65 7.11 99.48 0.71 -15.94 16 11 H -0.27 -14.22 7.11 99.48 0.71 -13.51 16 12 C 0.15 5.33 5.80 86.38 0.50 5.83 16 13 C 0.11 4.25 6.00 86.38 0.52 4.77 16 14 N -0.71 -20.94 5.55 -463.05 -2.57 -23.52 16 15 C 0.54 18.09 6.73 87.66 0.59 18.68 16 16 O -0.59 -26.77 17.02 -3.01 -0.05 -26.82 16 17 C -0.18 -3.97 2.19 -52.93 -0.12 -4.09 16 18 C 0.10 2.00 5.82 71.98 0.42 2.42 16 19 O -0.42 -11.64 10.44 -148.98 -1.56 -13.19 16 20 C 0.03 0.50 11.01 113.37 1.25 1.75 16 21 C -0.15 -2.75 9.86 30.59 0.30 -2.45 16 22 C -0.12 -1.45 9.95 30.60 0.30 -1.15 16 23 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 24 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.60 3.34 -2.39 -0.01 1.59 16 27 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 28 H 0.26 15.86 8.31 -92.72 -0.77 15.09 16 29 H 0.09 2.44 8.06 -2.39 -0.02 2.42 16 30 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 31 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.42 8.62 8.48 -92.71 -0.79 7.84 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -80.80 349.06 2.74 -78.06 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.14 Total: 11.61 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.22 Total: 12.79 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.74 Total: -112.61 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.61 Total: -40.01 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.72 Total: 50.16 kcal Total: -80.80 2.74 -78.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714587250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.457 kcal (2) G-P(sol) polarization free energy of solvation -80.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds