Wall clock time and date at job start Mon Mar 30 2020 01:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99936 * 2 1 4 4 C 1.53002 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.52997 * 115.54930 * 63.50899 * 4 3 2 6 6 C 1.50697 * 109.47197 * 65.55871 * 5 4 3 7 7 O 1.21278 * 120.00364 * 5.68863 * 6 5 4 8 8 N 1.34780 * 119.99572 * 185.69213 * 6 5 4 9 9 C 1.46491 * 120.00525 * 359.97438 * 8 6 5 10 10 C 1.46503 * 119.99643 * 179.97438 * 8 6 5 11 11 C 1.52999 * 109.47427 * 89.99787 * 10 8 6 12 12 N 1.46493 * 109.47626 * 179.97438 * 11 10 8 13 13 C 1.36934 * 120.00061 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00328 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99676 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00583 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99798 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46965 * 60.00144 * 17 15 13 19 19 H 1.48499 * 109.46897 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47262 * 300.00440 * 17 15 13 21 21 C 1.52999 * 117.50182 * 277.83485 * 4 3 2 22 22 C 1.53000 * 117.49684 * 209.17754 * 4 3 2 23 23 H 1.08996 * 109.47424 * 59.99795 * 1 2 3 24 24 H 1.08999 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46852 * 299.99234 * 1 2 3 26 26 H 1.09000 * 109.47458 * 300.00447 * 3 2 1 27 27 H 1.09001 * 109.47038 * 60.00541 * 3 2 1 28 28 H 1.09006 * 109.47328 * 185.55581 * 5 4 3 29 29 H 1.08996 * 109.47334 * 305.55523 * 5 4 3 30 30 H 1.08999 * 109.47632 * 89.99970 * 9 8 6 31 31 H 1.09006 * 109.47437 * 210.00087 * 9 8 6 32 32 H 1.09001 * 109.46985 * 330.00296 * 9 8 6 33 33 H 1.09003 * 109.46967 * 209.99928 * 10 8 6 34 34 H 1.09000 * 109.47121 * 329.99987 * 10 8 6 35 35 H 1.08997 * 109.46954 * 300.00425 * 11 10 8 36 36 H 1.09007 * 109.47072 * 59.99704 * 11 10 8 37 37 H 0.96998 * 119.99979 * 0.02562 * 12 11 10 38 38 H 0.96997 * 120.00468 * 179.97438 * 16 15 13 39 39 H 1.09009 * 117.49712 * 0.02562 * 21 4 3 40 40 H 1.08999 * 117.50257 * 145.02188 * 21 4 3 41 41 H 1.09005 * 117.50045 * 214.98125 * 22 4 3 42 42 H 1.08996 * 117.49857 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1441 0.5189 -1.2364 6 6 3.8974 1.3837 -2.4457 7 8 3.3864 2.4759 -2.3161 8 7 4.2447 0.9432 -3.6712 9 6 4.8624 -0.3759 -3.8278 10 6 4.0043 1.7836 -4.8469 11 6 5.2262 2.6691 -5.0993 12 7 4.9862 3.5091 -6.2753 13 6 5.9471 4.3895 -6.6955 14 1 6.8821 4.4645 -6.1602 15 6 5.7193 5.1858 -7.8095 16 7 4.5797 5.0950 -8.4616 17 14 7.0304 6.3864 -8.3831 18 1 8.2696 5.6415 -8.7219 19 1 6.5455 7.1120 -9.5846 20 1 7.3187 7.3597 -7.2992 21 6 4.2257 0.9441 1.3435 22 6 4.3335 2.3099 0.6609 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 5.2173 0.3952 -1.0911 29 1 3.6831 -0.4571 -1.3876 30 1 4.0855 -1.1254 -3.9784 31 1 5.5288 -0.3650 -4.6903 32 1 5.4326 -0.6187 -2.9311 33 1 3.8287 1.1503 -5.7165 34 1 3.1306 2.4115 -4.6722 35 1 5.4019 3.3024 -4.2297 36 1 6.1001 2.0413 -5.2740 37 1 4.1463 3.4421 -6.7558 38 1 4.4204 5.6517 -9.2398 39 1 3.5931 0.8716 2.2282 40 1 5.1136 0.3120 1.3473 41 1 5.2924 2.5758 0.2159 42 1 3.7720 3.1365 1.0961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714705616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:08 Heat of formation + Delta-G solvation = -41.041987 kcal Electronic energy + Delta-G solvation = -21062.754865 eV Core-core repulsion = 17851.534082 eV Total energy + Delta-G solvation = -3211.220783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09970 -38.41603 -36.76919 -35.70070 -34.29669 -31.53652 -29.87579 -28.29722 -27.67148 -26.19857 -25.55492 -23.61686 -22.50481 -21.57217 -19.90179 -18.63787 -17.15919 -16.87344 -16.45841 -16.18065 -15.98978 -15.39433 -15.21803 -14.50210 -14.41908 -13.74576 -13.63628 -13.33704 -13.19361 -12.96680 -12.80522 -12.46727 -12.21952 -12.14420 -11.79625 -11.59281 -11.26700 -11.10092 -10.93868 -10.86216 -10.62952 -10.45973 -10.14444 -10.11620 -9.80541 -9.71984 -9.34080 -8.83787 -8.41203 -6.90026 -5.73123 -3.02225 2.85430 3.09680 3.42646 3.46960 3.50849 3.52521 3.92093 4.52704 4.56746 4.64055 4.73405 4.82927 5.00440 5.12270 5.14711 5.22612 5.33325 5.40671 5.43983 5.47837 5.52963 5.54791 5.63417 5.68667 5.69507 5.80361 5.86231 5.90905 5.95761 6.02642 6.08463 6.18281 6.62128 6.79475 6.96980 7.02253 7.59807 7.72534 8.40739 8.45917 9.56184 10.12947 10.48104 11.49815 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.003517 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.964914 B = 7959.271994 C = 8125.635729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.096 3.904 4 C -0.105 4.105 5 C -0.099 4.099 6 C 0.512 3.488 7 O -0.529 6.529 8 N -0.615 5.615 9 C 0.078 3.922 10 C 0.108 3.892 11 C 0.144 3.856 12 N -0.731 5.731 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.169 4.169 22 C -0.152 4.152 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -14.461 18.661 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.020 3.980 4 C -0.105 4.105 5 C -0.139 4.139 6 C 0.299 3.701 7 O -0.406 6.406 8 N -0.349 5.349 9 C -0.065 4.065 10 C -0.014 4.014 11 C 0.015 3.985 12 N -0.375 5.375 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.206 4.206 22 C -0.190 4.190 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.070 -13.948 18.700 23.682 hybrid contribution 0.300 0.811 -0.631 1.071 sum -3.770 -13.137 18.069 22.656 Atomic orbital electron populations 1.22707 0.81242 1.02482 0.99995 1.87824 1.19373 1.28305 1.95473 1.22048 0.90596 0.84256 1.01095 1.20861 0.92616 1.04025 0.93006 1.21168 1.01906 0.99519 0.91266 1.20592 0.78234 0.87154 0.84088 1.90697 1.42887 1.21488 1.85479 1.47842 1.61714 1.18206 1.07112 1.21795 0.97925 0.83823 1.02976 1.21675 1.00079 0.93644 0.86045 1.20899 0.94291 0.92263 0.91046 1.42207 1.19558 1.45293 1.30465 1.19167 0.96209 1.13346 1.08232 0.91278 1.24745 0.97412 1.00381 0.98441 1.69648 1.23710 1.43254 1.21670 0.86238 0.80852 0.81025 0.77901 1.21272 1.21640 1.21232 1.23081 1.02485 0.99797 0.95210 1.22962 1.01586 0.91933 1.02473 0.94030 0.89773 0.94320 0.91278 0.93466 0.88881 0.88233 0.92672 0.90638 0.91324 0.90655 0.89832 0.95992 0.96551 0.78284 0.93445 0.88666 0.88630 0.88313 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.61 10.54 -35.23 -0.37 -4.99 16 3 C 0.10 1.16 5.55 37.16 0.21 1.37 16 4 C -0.10 -1.20 1.27 -154.51 -0.20 -1.40 16 5 C -0.10 -1.12 3.99 -27.89 -0.11 -1.23 16 6 C 0.51 7.81 7.46 -10.99 -0.08 7.73 16 7 O -0.53 -10.10 14.15 5.56 0.08 -10.03 16 8 N -0.61 -9.00 2.87 -181.57 -0.52 -9.52 16 9 C 0.08 0.80 10.14 59.84 0.61 1.41 16 10 C 0.11 1.93 5.52 -4.04 -0.02 1.91 16 11 C 0.14 3.13 6.58 -4.05 -0.03 3.10 16 12 N -0.73 -19.53 5.60 -59.91 -0.34 -19.87 16 13 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 14 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 17 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C -0.17 -1.55 9.94 -26.70 -0.27 -1.81 16 22 C -0.15 -1.66 9.83 -26.70 -0.26 -1.92 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.99 6.66 -51.93 -0.35 0.64 16 27 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.09 0.88 7.64 -51.93 -0.40 0.48 16 29 H 0.10 1.02 7.86 -51.93 -0.41 0.61 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.07 0.55 6.60 -51.93 -0.34 0.21 16 33 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 10.63 7.67 -40.82 -0.31 10.31 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -34.38 349.53 -6.69 -41.07 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.22 Total: 5.41 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 0.71 Total: 2.93 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.13 Total: -57.62 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.29 Total: -15.01 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.38 -6.69 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714705616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.028 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds