Wall clock time and date at job start Mon Mar 30 2020 01:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99936 * 2 1 4 4 C 1.53002 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.52997 * 115.54930 * 63.50899 * 4 3 2 6 6 C 1.50697 * 109.47197 * 65.55871 * 5 4 3 7 7 O 1.21278 * 120.00364 * 5.68863 * 6 5 4 8 8 N 1.34780 * 119.99572 * 185.69213 * 6 5 4 9 9 C 1.46491 * 120.00525 * 359.97438 * 8 6 5 10 10 C 1.46503 * 119.99643 * 179.97438 * 8 6 5 11 11 C 1.52999 * 109.47427 * 89.99787 * 10 8 6 12 12 N 1.46493 * 109.47626 * 179.97438 * 11 10 8 13 13 C 1.36934 * 120.00061 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00328 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99676 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00583 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99798 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46965 * 60.00144 * 17 15 13 19 19 H 1.48499 * 109.46897 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47262 * 300.00440 * 17 15 13 21 21 C 1.52999 * 117.50182 * 277.83485 * 4 3 2 22 22 C 1.53000 * 117.49684 * 209.17754 * 4 3 2 23 23 H 1.08996 * 109.47424 * 59.99795 * 1 2 3 24 24 H 1.08999 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46852 * 299.99234 * 1 2 3 26 26 H 1.09000 * 109.47458 * 300.00447 * 3 2 1 27 27 H 1.09001 * 109.47038 * 60.00541 * 3 2 1 28 28 H 1.09006 * 109.47328 * 185.55581 * 5 4 3 29 29 H 1.08996 * 109.47334 * 305.55523 * 5 4 3 30 30 H 1.08999 * 109.47632 * 89.99970 * 9 8 6 31 31 H 1.09006 * 109.47437 * 210.00087 * 9 8 6 32 32 H 1.09001 * 109.46985 * 330.00296 * 9 8 6 33 33 H 1.09003 * 109.46967 * 209.99928 * 10 8 6 34 34 H 1.09000 * 109.47121 * 329.99987 * 10 8 6 35 35 H 1.08997 * 109.46954 * 300.00425 * 11 10 8 36 36 H 1.09007 * 109.47072 * 59.99704 * 11 10 8 37 37 H 0.96998 * 119.99979 * 0.02562 * 12 11 10 38 38 H 0.96997 * 120.00468 * 179.97438 * 16 15 13 39 39 H 1.09009 * 117.49712 * 0.02562 * 21 4 3 40 40 H 1.08999 * 117.50257 * 145.02188 * 21 4 3 41 41 H 1.09005 * 117.50045 * 214.98125 * 22 4 3 42 42 H 1.08996 * 117.49857 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1441 0.5189 -1.2364 6 6 3.8974 1.3837 -2.4457 7 8 3.3864 2.4759 -2.3161 8 7 4.2447 0.9432 -3.6712 9 6 4.8624 -0.3759 -3.8278 10 6 4.0043 1.7836 -4.8469 11 6 5.2262 2.6691 -5.0993 12 7 4.9862 3.5091 -6.2753 13 6 5.9471 4.3895 -6.6955 14 1 6.8821 4.4645 -6.1602 15 6 5.7193 5.1858 -7.8095 16 7 4.5797 5.0950 -8.4616 17 14 7.0304 6.3864 -8.3831 18 1 8.2696 5.6415 -8.7219 19 1 6.5455 7.1120 -9.5846 20 1 7.3187 7.3597 -7.2992 21 6 4.2257 0.9441 1.3435 22 6 4.3335 2.3099 0.6609 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 5.2173 0.3952 -1.0911 29 1 3.6831 -0.4571 -1.3876 30 1 4.0855 -1.1254 -3.9784 31 1 5.5288 -0.3650 -4.6903 32 1 5.4326 -0.6187 -2.9311 33 1 3.8287 1.1503 -5.7165 34 1 3.1306 2.4115 -4.6722 35 1 5.4019 3.3024 -4.2297 36 1 6.1001 2.0413 -5.2740 37 1 4.1463 3.4421 -6.7558 38 1 4.4204 5.6517 -9.2398 39 1 3.5931 0.8716 2.2282 40 1 5.1136 0.3120 1.3473 41 1 5.2924 2.5758 0.2159 42 1 3.7720 3.1365 1.0961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714705616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:08 Heat of formation + Delta-G solvation = -64.744111 kcal Electronic energy + Delta-G solvation = -21063.782666 eV Core-core repulsion = 17851.534082 eV Total energy + Delta-G solvation = -3212.248584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20309 -39.37760 -37.68234 -37.15372 -36.04187 -33.48307 -31.16946 -29.46830 -28.73143 -27.37983 -26.40814 -25.51150 -23.40401 -23.20679 -21.00916 -19.70259 -19.18757 -18.01276 -17.48348 -17.19013 -16.91118 -16.70714 -16.42865 -16.13025 -15.34035 -15.30565 -15.18387 -14.96989 -14.41650 -14.19958 -13.98505 -13.31346 -13.18718 -13.14599 -13.05623 -12.85326 -12.69614 -12.52503 -12.37392 -12.33012 -12.18125 -11.96017 -11.88832 -11.32463 -11.02813 -10.98647 -10.72196 -10.40973 -9.64678 -9.08823 -7.99263 -5.30519 1.44896 1.49338 1.55460 1.69298 1.98369 2.53755 2.59905 3.09499 3.33665 3.65775 3.69546 3.83922 3.99505 4.06237 4.10592 4.23881 4.25215 4.36515 4.39023 4.50042 4.54152 4.55553 4.60533 4.71669 4.77423 4.81154 4.84567 4.90625 4.95333 5.00730 5.06473 5.09425 5.13403 5.26850 5.40982 5.55827 6.18555 6.21927 6.46687 7.24701 7.27955 7.99580 8.25194 9.23971 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.003517 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.964914 B = 7959.271994 C = 8125.635729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.100 3.900 4 C -0.127 4.127 5 C -0.087 4.087 6 C 0.503 3.497 7 O -0.578 6.578 8 N -0.615 5.615 9 C 0.071 3.929 10 C 0.123 3.877 11 C 0.151 3.849 12 N -0.744 5.744 13 C -0.254 4.254 14 H 0.073 0.927 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.979 3.021 18 H -0.273 1.273 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.139 4.139 22 C -0.167 4.167 23 H 0.033 0.967 24 H 0.104 0.896 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.056 0.944 35 H -0.001 1.001 36 H 0.029 0.971 37 H 0.375 0.625 38 H 0.254 0.746 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -16.258 19.894 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.024 3.976 4 C -0.127 4.127 5 C -0.127 4.127 6 C 0.293 3.707 7 O -0.457 6.457 8 N -0.348 5.348 9 C -0.071 4.071 10 C -0.001 4.001 11 C 0.023 3.977 12 N -0.387 5.387 13 C -0.386 4.386 14 H 0.091 0.909 15 C -0.265 4.265 16 N -0.618 5.618 17 Si 0.807 3.193 18 H -0.199 1.199 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.176 4.176 22 C -0.204 4.204 23 H 0.052 0.948 24 H 0.122 0.878 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.017 0.983 36 H 0.047 0.953 37 H 0.207 0.793 38 H 0.063 0.937 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.111 0.889 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.735 -15.804 19.965 25.610 hybrid contribution -0.154 1.334 -0.967 1.655 sum -2.888 -14.470 18.998 24.055 Atomic orbital electron populations 1.22893 0.80015 1.03891 1.00217 1.87792 1.20787 1.27939 1.95480 1.21925 0.91456 0.84333 0.99901 1.20966 0.92218 1.05047 0.94480 1.21186 1.03586 0.98977 0.88925 1.21442 0.77123 0.87016 0.85147 1.90679 1.44974 1.23833 1.86205 1.47960 1.61716 1.19263 1.05905 1.22114 0.98730 0.81675 1.04544 1.21281 0.97067 0.93596 0.88174 1.20933 0.96539 0.91873 0.88333 1.42401 1.18828 1.45827 1.31652 1.19567 0.96788 1.13818 1.08396 0.90900 1.25645 0.99758 1.02393 0.98714 1.69811 1.25684 1.44259 1.22078 0.85138 0.78384 0.78595 0.77184 1.19853 1.21687 1.20590 1.23160 1.02515 0.98008 0.93879 1.22976 1.01234 0.92795 1.03438 0.94831 0.87774 0.93124 0.94511 0.92682 0.86304 0.86574 0.90649 0.90544 0.88451 0.89041 0.92549 0.98299 0.95270 0.79309 0.93732 0.87716 0.86546 0.88938 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -8.97 10.54 -148.98 -1.57 -10.54 16 3 C 0.10 2.40 5.55 71.98 0.40 2.80 16 4 C -0.13 -2.73 1.27 -52.18 -0.07 -2.80 16 5 C -0.09 -1.79 3.99 29.85 0.12 -1.67 16 6 C 0.50 15.18 7.46 87.66 0.65 15.83 16 7 O -0.58 -22.92 14.15 -3.02 -0.04 -22.97 16 8 N -0.62 -17.43 2.87 -846.76 -2.43 -19.86 16 9 C 0.07 1.25 10.14 127.77 1.30 2.54 16 10 C 0.12 4.44 5.52 86.38 0.48 4.91 16 11 C 0.15 6.66 6.58 86.38 0.57 7.23 16 12 N -0.74 -40.57 5.60 -343.47 -1.92 -42.49 16 13 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 14 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 15 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 16 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 17 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 C -0.14 -2.17 9.94 30.62 0.30 -1.86 16 22 C -0.17 -3.50 9.83 30.62 0.30 -3.20 16 23 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.04 1.11 6.66 -2.39 -0.02 1.09 16 27 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 28 H 0.12 1.81 7.64 -2.38 -0.02 1.79 16 29 H 0.12 2.01 7.86 -2.39 -0.02 1.99 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.36 8.07 -2.38 -0.02 1.34 16 32 H 0.10 1.17 6.60 -2.39 -0.02 1.15 16 33 H 0.09 2.99 8.07 -2.39 -0.02 2.97 16 34 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.38 21.41 7.67 -92.71 -0.71 20.70 16 38 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -75.69 349.53 3.22 -72.46 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.28 Total: 27.22 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.61 Total: 7.48 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -4.07 Total: -122.95 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.61 Total: -33.51 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.69 3.22 -72.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714705616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.719 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds