Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99688 * 2 1 4 4 H 1.09003 * 109.47098 * 30.00146 * 3 2 1 5 5 C 1.50694 * 109.47101 * 270.00284 * 3 2 1 6 6 O 1.21282 * 119.99982 * 354.99500 * 5 3 2 7 7 N 1.34779 * 120.00015 * 175.00472 * 5 3 2 8 8 C 1.46500 * 119.99939 * 359.97438 * 7 5 3 9 9 C 1.46501 * 120.00013 * 180.27383 * 7 5 3 10 10 C 1.52999 * 109.46978 * 269.72110 * 9 7 5 11 11 N 1.46501 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.46500 * 119.99988 * 269.99795 * 11 10 9 13 13 C 1.36936 * 119.99965 * 89.99995 * 11 10 9 14 14 H 1.08001 * 120.00194 * 22.34389 * 13 11 10 15 15 C 1.38815 * 120.00276 * 202.34702 * 13 11 10 16 16 N 1.31618 * 119.99830 * 11.34141 * 15 13 11 17 17 Si 1.86799 * 120.00157 * 191.34730 * 15 13 11 18 18 H 1.48498 * 109.47035 * 59.99899 * 17 15 13 19 19 H 1.48504 * 109.46856 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47091 * 299.99472 * 17 15 13 21 21 C 1.52996 * 109.46944 * 150.00277 * 3 2 1 22 22 C 1.53000 * 117.49903 * 8.74118 * 21 3 2 23 23 C 1.53010 * 117.49771 * 300.08604 * 21 3 2 24 24 H 1.09001 * 109.47439 * 299.99673 * 1 2 3 25 25 H 1.08993 * 109.47256 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47049 * 90.00467 * 8 7 5 28 28 H 1.08996 * 109.47380 * 210.00578 * 8 7 5 29 29 H 1.09001 * 109.47105 * 330.00531 * 8 7 5 30 30 H 1.09000 * 109.46912 * 29.72051 * 9 7 5 31 31 H 1.09000 * 109.46908 * 149.71821 * 9 7 5 32 32 H 1.09000 * 109.47251 * 299.99733 * 10 9 7 33 33 H 1.08994 * 109.47113 * 60.00234 * 10 9 7 34 34 H 1.09005 * 109.46878 * 94.21350 * 12 11 10 35 35 H 1.09002 * 109.47300 * 214.21007 * 12 11 10 36 36 H 1.08997 * 109.47260 * 334.21503 * 12 11 10 37 37 H 0.96998 * 120.00304 * 180.02562 * 16 15 13 38 38 H 1.09001 * 115.55127 * 154.42254 * 21 3 2 39 39 H 1.08999 * 117.50337 * 0.02562 * 22 21 3 40 40 H 1.09006 * 117.49593 * 145.01965 * 22 21 3 41 41 H 1.08996 * 117.49503 * 214.98319 * 23 21 3 42 42 H 1.09000 * 117.49542 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9995 0.5139 5 6 2.2144 1.7645 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6588 3.0126 -1.6685 8 6 2.9427 3.9232 -0.5566 9 6 2.8516 3.4607 -3.0499 10 6 4.2816 3.1455 -3.4934 11 7 4.4746 3.5942 -4.8746 12 6 4.1903 2.6842 -5.9869 13 6 4.9208 4.8642 -5.1259 14 1 5.4638 5.4062 -4.3657 15 6 4.6751 5.4553 -6.3577 16 7 3.8311 4.8965 -7.1990 17 14 5.5424 7.0434 -6.8212 18 1 7.0113 6.8254 -6.8145 19 1 5.1112 7.4649 -8.1783 20 1 5.1945 8.1021 -5.8397 21 6 3.3589 1.2634 0.7212 22 6 3.9152 -0.1109 1.0991 23 6 3.3638 0.8168 2.1846 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9828 3.8099 -0.2507 28 1 2.7674 4.9509 -0.8748 29 1 2.2891 3.6864 0.2830 30 1 2.1469 2.9438 -3.7013 31 1 2.6810 4.5356 -3.1103 32 1 4.9863 3.6624 -2.8421 33 1 4.4521 2.0707 -3.4330 34 1 3.1714 2.8472 -6.3384 35 1 4.8901 2.8751 -6.8005 36 1 4.2976 1.6534 -5.6495 37 1 3.6597 5.3092 -8.0599 38 1 4.0734 2.0323 0.4273 39 1 3.3207 -0.9850 0.8336 40 1 4.9959 -0.2461 1.0540 41 1 4.0818 1.2916 2.8532 42 1 2.4061 0.5535 2.6336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715817055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -18.931590 kcal Electronic energy + Delta-G solvation = -21707.049180 eV Core-core repulsion = 18496.787176 eV Total energy + Delta-G solvation = -3210.262005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23010 -37.93967 -36.38714 -35.80435 -34.77795 -31.53920 -29.62382 -28.00728 -26.49788 -26.10144 -25.68201 -23.27900 -22.46066 -21.14626 -20.56294 -19.11277 -17.26892 -16.85952 -16.61557 -16.17874 -15.36773 -15.34169 -14.68705 -14.47215 -14.31665 -13.58098 -13.50043 -13.08248 -13.04309 -12.86515 -12.41733 -12.19578 -12.03444 -11.68974 -11.47740 -11.39881 -11.25433 -10.83942 -10.80995 -10.65817 -10.49129 -10.47486 -10.27364 -10.07691 -9.91008 -9.75370 -9.02694 -8.59675 -8.34647 -6.71534 -5.69566 -3.16070 2.76635 3.14783 3.38887 3.44702 3.45579 3.61366 3.76769 4.43112 4.52494 4.62652 4.71719 4.93073 5.03070 5.14195 5.23369 5.28047 5.39115 5.44126 5.49237 5.51816 5.59720 5.68616 5.73464 5.81948 5.87814 5.98269 6.16750 6.28105 6.41460 6.58762 6.77204 6.89555 6.90648 7.08764 7.46559 7.69088 7.78155 7.85507 8.41436 8.47369 9.26449 9.89901 10.40157 11.35105 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030791 B = 0.004173 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.145315 B = 6707.721291 C = 7026.391210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.106 3.894 4 H 0.085 0.915 5 C 0.489 3.511 6 O -0.523 6.523 7 N -0.610 5.610 8 C 0.077 3.923 9 C 0.093 3.907 10 C 0.145 3.855 11 N -0.599 5.599 12 C 0.164 3.836 13 C -0.257 4.257 14 H 0.068 0.932 15 C 0.002 3.998 16 N -0.907 5.907 17 Si 0.906 3.094 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.170 4.170 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.028 0.972 35 H 0.044 0.956 36 H -0.002 1.002 37 H 0.253 0.747 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -5.572 19.354 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.044 3.956 4 H 0.103 0.897 5 C 0.275 3.725 6 O -0.398 6.398 7 N -0.345 5.345 8 C -0.067 4.067 9 C -0.031 4.031 10 C 0.017 3.983 11 N -0.322 5.322 12 C 0.020 3.980 13 C -0.387 4.387 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.552 5.552 17 Si 0.736 3.264 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.182 4.182 22 C -0.195 4.195 23 C -0.207 4.207 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.063 0.937 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.246 -6.111 18.640 20.070 hybrid contribution 0.117 1.356 -0.377 1.412 sum -4.129 -4.755 18.263 19.318 Atomic orbital electron populations 1.22840 0.80792 1.03091 0.99956 1.87957 1.19826 1.25142 1.94444 1.21436 0.95093 0.86311 0.92718 0.89735 1.21108 0.77908 0.81966 0.91563 1.90716 1.50128 1.53042 1.45915 1.48137 1.65397 1.12671 1.08341 1.21892 1.00728 0.94689 0.89391 1.22646 1.01448 0.99943 0.79090 1.21079 0.92874 0.97183 0.87189 1.43942 1.76807 1.11962 0.99496 1.20806 1.00079 0.87616 0.89513 1.19177 1.28448 0.91320 0.99732 0.91471 1.25046 0.98111 0.98151 0.98309 1.70072 1.35509 1.40295 1.09303 0.86327 0.79382 0.83291 0.77449 1.21077 1.21624 1.20989 1.22371 0.96903 1.01295 0.97583 1.22880 1.00754 0.94141 1.01702 1.22955 1.03067 1.04098 0.90585 0.94202 0.93550 0.89306 0.92447 0.90736 0.91694 0.90637 0.90567 0.94060 0.94238 0.95365 0.93690 0.98325 0.93669 0.85868 0.87462 0.88812 0.88577 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 101.05 1.09 1.41 16 2 O -0.36 -4.81 8.24 -55.09 -0.45 -5.27 16 3 C 0.11 1.33 2.06 -27.89 -0.06 1.27 16 4 H 0.09 0.85 6.77 -51.93 -0.35 0.50 16 5 C 0.49 8.20 7.04 -10.99 -0.08 8.12 16 6 O -0.52 -11.20 16.08 -14.31 -0.23 -11.43 16 7 N -0.61 -9.66 2.87 -181.57 -0.52 -10.19 16 8 C 0.08 0.85 9.12 59.85 0.55 1.39 16 9 C 0.09 1.85 5.78 -4.04 -0.02 1.83 16 10 C 0.15 3.19 6.03 -4.04 -0.02 3.17 16 11 N -0.60 -15.76 2.93 -181.12 -0.53 -16.29 16 12 C 0.16 4.36 9.01 59.85 0.54 4.90 16 13 C -0.26 -7.13 9.67 -15.06 -0.15 -7.28 16 14 H 0.07 1.80 7.84 -52.49 -0.41 1.38 16 15 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 16 N -0.91 -26.85 10.58 55.49 0.59 -26.26 16 17 Si 0.91 21.87 29.57 -169.99 -5.03 16.84 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 C -0.16 -1.76 4.99 -90.62 -0.45 -2.21 16 22 C -0.16 -1.67 9.88 -26.69 -0.26 -1.93 16 23 C -0.17 -1.45 10.19 -26.69 -0.27 -1.72 16 24 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.57 6.97 -51.93 -0.36 0.21 16 28 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 29 H 0.06 0.55 6.15 -51.93 -0.32 0.23 16 30 H 0.08 1.73 7.42 -51.93 -0.39 1.34 16 31 H 0.08 1.55 7.89 -51.93 -0.41 1.14 16 32 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 33 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 34 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 35 H 0.04 1.25 7.19 -51.93 -0.37 0.88 16 36 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 37 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.12 1.30 5.89 -51.93 -0.31 0.99 16 39 H 0.11 1.27 7.06 -51.93 -0.37 0.90 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -33.41 340.66 -7.25 -40.66 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.98 Total: -2.11 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 0.77 Total: 8.92 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.46 Total: -52.74 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.68 Total: -16.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.41 -7.25 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715817055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.728 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds