Wall clock time and date at job start Mon Mar 30 2020 01:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99688 * 2 1 4 4 H 1.09003 * 109.47098 * 30.00146 * 3 2 1 5 5 C 1.50694 * 109.47101 * 270.00284 * 3 2 1 6 6 O 1.21282 * 119.99982 * 354.99500 * 5 3 2 7 7 N 1.34779 * 120.00015 * 175.00472 * 5 3 2 8 8 C 1.46500 * 119.99939 * 359.97438 * 7 5 3 9 9 C 1.46501 * 120.00013 * 180.27383 * 7 5 3 10 10 C 1.52999 * 109.46978 * 269.72110 * 9 7 5 11 11 N 1.46501 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.46500 * 119.99988 * 269.99795 * 11 10 9 13 13 C 1.36936 * 119.99965 * 89.99995 * 11 10 9 14 14 H 1.08001 * 120.00194 * 22.34389 * 13 11 10 15 15 C 1.38815 * 120.00276 * 202.34702 * 13 11 10 16 16 N 1.31618 * 119.99830 * 11.34141 * 15 13 11 17 17 Si 1.86799 * 120.00157 * 191.34730 * 15 13 11 18 18 H 1.48498 * 109.47035 * 59.99899 * 17 15 13 19 19 H 1.48504 * 109.46856 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47091 * 299.99472 * 17 15 13 21 21 C 1.52996 * 109.46944 * 150.00277 * 3 2 1 22 22 C 1.53000 * 117.49903 * 8.74118 * 21 3 2 23 23 C 1.53010 * 117.49771 * 300.08604 * 21 3 2 24 24 H 1.09001 * 109.47439 * 299.99673 * 1 2 3 25 25 H 1.08993 * 109.47256 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47049 * 90.00467 * 8 7 5 28 28 H 1.08996 * 109.47380 * 210.00578 * 8 7 5 29 29 H 1.09001 * 109.47105 * 330.00531 * 8 7 5 30 30 H 1.09000 * 109.46912 * 29.72051 * 9 7 5 31 31 H 1.09000 * 109.46908 * 149.71821 * 9 7 5 32 32 H 1.09000 * 109.47251 * 299.99733 * 10 9 7 33 33 H 1.08994 * 109.47113 * 60.00234 * 10 9 7 34 34 H 1.09005 * 109.46878 * 94.21350 * 12 11 10 35 35 H 1.09002 * 109.47300 * 214.21007 * 12 11 10 36 36 H 1.08997 * 109.47260 * 334.21503 * 12 11 10 37 37 H 0.96998 * 120.00304 * 180.02562 * 16 15 13 38 38 H 1.09001 * 115.55127 * 154.42254 * 21 3 2 39 39 H 1.08999 * 117.50337 * 0.02562 * 22 21 3 40 40 H 1.09006 * 117.49593 * 145.01965 * 22 21 3 41 41 H 1.08996 * 117.49503 * 214.98319 * 23 21 3 42 42 H 1.09000 * 117.49542 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9995 0.5139 5 6 2.2144 1.7645 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6588 3.0126 -1.6685 8 6 2.9427 3.9232 -0.5566 9 6 2.8516 3.4607 -3.0499 10 6 4.2816 3.1455 -3.4934 11 7 4.4746 3.5942 -4.8746 12 6 4.1903 2.6842 -5.9869 13 6 4.9208 4.8642 -5.1259 14 1 5.4638 5.4062 -4.3657 15 6 4.6751 5.4553 -6.3577 16 7 3.8311 4.8965 -7.1990 17 14 5.5424 7.0434 -6.8212 18 1 7.0113 6.8254 -6.8145 19 1 5.1112 7.4649 -8.1783 20 1 5.1945 8.1021 -5.8397 21 6 3.3589 1.2634 0.7212 22 6 3.9152 -0.1109 1.0991 23 6 3.3638 0.8168 2.1846 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9828 3.8099 -0.2507 28 1 2.7674 4.9509 -0.8748 29 1 2.2891 3.6864 0.2830 30 1 2.1469 2.9438 -3.7013 31 1 2.6810 4.5356 -3.1103 32 1 4.9863 3.6624 -2.8421 33 1 4.4521 2.0707 -3.4330 34 1 3.1714 2.8472 -6.3384 35 1 4.8901 2.8751 -6.8005 36 1 4.2976 1.6534 -5.6495 37 1 3.6597 5.3092 -8.0599 38 1 4.0734 2.0323 0.4273 39 1 3.3207 -0.9850 0.8336 40 1 4.9959 -0.2461 1.0540 41 1 4.0818 1.2916 2.8532 42 1 2.4061 0.5535 2.6336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715817055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:39 Heat of formation + Delta-G solvation = -39.776962 kcal Electronic energy + Delta-G solvation = -21707.953104 eV Core-core repulsion = 18496.787176 eV Total energy + Delta-G solvation = -3211.165928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41381 -39.05810 -37.77326 -37.14252 -36.26568 -33.51194 -31.09419 -29.25624 -28.02217 -27.49987 -27.10686 -24.99317 -23.17165 -22.54063 -21.98116 -20.36972 -18.85605 -18.29413 -17.92639 -17.16230 -16.98764 -16.50688 -16.22162 -15.73015 -15.46872 -15.35210 -14.90857 -14.48997 -14.22748 -14.03343 -13.97430 -13.83206 -13.28317 -13.02601 -12.82956 -12.74012 -12.51124 -12.45119 -12.29685 -12.21867 -12.10431 -11.97271 -11.70228 -11.62986 -11.30775 -11.06078 -10.67810 -10.20642 -9.79488 -8.81191 -7.83794 -5.34369 1.47682 1.50000 1.53471 1.57856 1.92826 2.51491 2.69099 2.96406 3.31246 3.43667 3.72872 3.76863 3.88174 4.09639 4.17743 4.24677 4.34966 4.41264 4.45659 4.49664 4.55219 4.63114 4.71900 4.77305 4.80491 4.88341 4.90455 4.92592 5.05658 5.12304 5.25312 5.28118 5.39512 5.49903 5.61132 5.64133 5.99099 6.29464 6.44808 7.10321 7.17425 7.80589 8.28554 9.20773 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030791 B = 0.004173 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.145315 B = 6707.721291 C = 7026.391210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.114 3.886 4 H 0.118 0.882 5 C 0.480 3.520 6 O -0.582 6.582 7 N -0.607 5.607 8 C 0.068 3.932 9 C 0.112 3.888 10 C 0.151 3.849 11 N -0.616 5.616 12 C 0.181 3.819 13 C -0.267 4.267 14 H 0.080 0.920 15 C -0.053 4.053 16 N -0.942 5.942 17 Si 0.976 3.024 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.269 1.269 21 C -0.176 4.176 22 C -0.178 4.178 23 C -0.136 4.136 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.001 0.999 35 H 0.024 0.976 36 H 0.014 0.986 37 H 0.248 0.752 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.119 0.881 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -4.255 22.628 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.053 3.947 4 H 0.135 0.865 5 C 0.269 3.731 6 O -0.461 6.461 7 N -0.341 5.341 8 C -0.073 4.073 9 C -0.014 4.014 10 C 0.024 3.976 11 N -0.340 5.340 12 C 0.036 3.964 13 C -0.397 4.397 14 H 0.097 0.903 15 C -0.248 4.248 16 N -0.589 5.589 17 Si 0.803 3.197 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.195 1.195 21 C -0.194 4.194 22 C -0.215 4.215 23 C -0.173 4.173 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.635 -4.777 21.998 22.802 hybrid contribution -0.088 0.872 -1.332 1.595 sum -3.723 -3.905 20.665 21.358 Atomic orbital electron populations 1.23009 0.79562 1.04170 1.00397 1.87951 1.21337 1.25877 1.94248 1.21519 0.96880 0.86593 0.89686 0.86491 1.22106 0.76480 0.81395 0.93127 1.90686 1.52653 1.54704 1.48101 1.48127 1.64851 1.13394 1.07735 1.22248 1.02682 0.93886 0.88509 1.22014 0.98928 0.99068 0.81376 1.21102 0.94403 0.96617 0.85493 1.44154 1.77204 1.11757 1.00856 1.20499 0.97845 0.88609 0.89440 1.19573 1.28274 0.91665 1.00142 0.90274 1.25897 0.98924 1.01679 0.98316 1.70265 1.37151 1.41983 1.09472 0.85216 0.78209 0.79421 0.76811 1.20393 1.22317 1.19470 1.22395 0.95998 1.01474 0.99543 1.22901 1.00928 0.93716 1.03953 1.23046 1.03655 1.01353 0.89246 0.90964 0.95708 0.88150 0.90718 0.90188 0.88298 0.94453 0.90769 0.92190 0.95211 0.98057 0.95711 0.96759 0.94239 0.85412 0.89294 0.88324 0.86257 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.81 113.37 1.23 1.71 16 2 O -0.38 -9.74 8.24 -129.99 -1.07 -10.81 16 3 C 0.11 2.63 2.06 29.84 0.06 2.69 16 4 H 0.12 1.90 6.77 -2.39 -0.02 1.89 16 5 C 0.48 15.96 7.04 87.65 0.62 16.57 16 6 O -0.58 -25.92 16.08 15.95 0.26 -25.66 16 7 N -0.61 -18.61 2.87 -846.76 -2.43 -21.04 16 8 C 0.07 1.28 9.12 127.77 1.17 2.45 16 9 C 0.11 4.52 5.78 86.38 0.50 5.02 16 10 C 0.15 6.66 6.03 86.38 0.52 7.18 16 11 N -0.62 -32.87 2.93 -726.94 -2.13 -35.00 16 12 C 0.18 9.97 9.01 127.77 1.15 11.12 16 13 C -0.27 -14.76 9.67 84.03 0.81 -13.95 16 14 H 0.08 4.11 7.84 -2.91 -0.02 4.09 16 15 C -0.05 -3.01 5.13 84.86 0.44 -2.57 16 16 N -0.94 -57.18 10.58 21.65 0.23 -56.95 16 17 Si 0.98 44.84 29.57 68.60 2.03 46.87 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.18 -3.29 4.99 -10.79 -0.05 -3.34 16 22 C -0.18 -3.43 9.88 30.62 0.30 -3.13 16 23 C -0.14 -1.77 10.19 30.62 0.31 -1.46 16 24 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 25 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.20 6.97 -2.39 -0.02 1.18 16 28 H 0.08 1.46 7.89 -2.39 -0.02 1.44 16 29 H 0.10 1.22 6.15 -2.39 -0.01 1.20 16 30 H 0.04 1.79 7.42 -2.39 -0.02 1.77 16 31 H 0.07 3.01 7.89 -2.39 -0.02 2.99 16 32 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 33 H 0.03 1.35 7.86 -2.39 -0.02 1.34 16 34 H 0.00 0.07 7.42 -2.38 -0.02 0.05 16 35 H 0.02 1.41 7.19 -2.39 -0.02 1.40 16 36 H 0.01 0.71 7.84 -2.39 -0.02 0.69 16 37 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.13 2.26 5.89 -2.39 -0.01 2.25 16 39 H 0.09 2.05 7.06 -2.39 -0.02 2.03 16 40 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.29 340.66 4.92 -70.37 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.99 Total: 9.91 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 7.05 Total: 22.31 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -4.33 Total: -112.99 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.81 Total: -36.47 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.29 4.92 -70.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715817055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.594 kcal (2) G-P(sol) polarization free energy of solvation -75.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds