Wall clock time and date at job start Mon Mar 30 2020 00:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47348 * 2 1 4 4 C 1.42895 * 114.00597 * 180.02562 * 3 2 1 5 5 H 1.09007 * 115.55783 * 355.68876 * 4 3 2 6 6 C 1.53073 * 117.51923 * 141.38842 * 4 3 2 7 7 C 1.52992 * 117.50045 * 210.00354 * 4 3 2 8 8 H 1.09000 * 117.50138 * 144.99468 * 7 4 3 9 9 C 1.50700 * 117.49949 * 359.97438 * 7 4 3 10 10 O 1.21279 * 120.00113 * 0.09194 * 9 7 4 11 11 N 1.34784 * 119.99961 * 180.08962 * 9 7 4 12 12 C 1.46493 * 119.99864 * 359.72839 * 11 9 7 13 13 C 1.53000 * 109.47637 * 90.00039 * 12 11 9 14 14 C 1.46494 * 119.99635 * 180.02562 * 11 9 7 15 15 C 1.53002 * 109.47325 * 90.00335 * 14 11 9 16 16 N 1.46499 * 109.46936 * 179.97438 * 15 14 11 17 17 C 1.36938 * 119.99478 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00412 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99950 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00067 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99767 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47506 * 89.99918 * 21 19 17 23 23 H 1.48498 * 109.46753 * 210.00068 * 21 19 17 24 24 H 1.48493 * 109.46895 * 329.99409 * 21 19 17 25 25 H 1.08997 * 109.47032 * 299.99727 * 1 2 3 26 26 H 1.08994 * 109.47076 * 60.00266 * 1 2 3 27 27 H 1.09003 * 109.46622 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46719 * 240.00007 * 2 1 3 29 29 H 1.08996 * 109.47372 * 120.00450 * 2 1 3 30 30 H 1.09000 * 117.51066 * 0.02562 * 6 4 3 31 31 H 1.08996 * 117.51507 * 214.95766 * 6 4 3 32 32 H 1.09002 * 109.47192 * 209.99937 * 12 11 9 33 33 H 1.08996 * 109.47342 * 329.99648 * 12 11 9 34 34 H 1.08994 * 109.47425 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.46747 * 300.00171 * 13 12 11 36 36 H 1.08996 * 109.47074 * 59.99445 * 13 12 11 37 37 H 1.09003 * 109.47006 * 210.00121 * 14 11 9 38 38 H 1.09004 * 109.47665 * 329.99813 * 14 11 9 39 39 H 1.08998 * 109.46465 * 299.99693 * 15 14 11 40 40 H 1.08993 * 109.47021 * 59.99589 * 15 14 11 41 41 H 0.96994 * 120.00305 * 0.02562 * 16 15 14 42 42 H 0.97000 * 119.99998 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9772 0.5197 0.0730 6 6 4.0518 2.5736 -0.8478 7 6 4.0426 2.6874 0.6779 8 1 4.9911 2.5545 1.1982 9 6 3.0966 3.6850 1.2953 10 8 1.8995 3.4977 1.2440 11 7 3.5811 4.7854 1.9045 12 6 5.0273 5.0086 1.9717 13 6 5.4786 5.8021 0.7438 14 6 2.6615 5.7548 2.5050 15 6 2.4007 5.3744 3.9639 16 7 1.4816 6.3443 4.5646 17 6 1.1003 6.2069 5.8726 18 1 1.4774 5.3839 6.4615 19 6 0.2298 7.1261 6.4420 20 7 -0.1363 6.9944 7.6994 21 14 -0.4220 8.5501 5.4237 22 1 -1.6837 8.1435 4.7545 23 1 -0.6838 9.7129 6.3094 24 1 0.5836 8.9260 4.3977 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3736 3.2204 -1.4045 31 1 5.0063 2.3657 -1.3313 32 1 5.2668 5.5697 2.8750 33 1 5.5426 4.0484 1.9932 34 1 6.5546 5.9686 0.7941 35 1 5.2392 5.2410 -0.1595 36 1 4.9634 6.7623 0.7223 37 1 3.1042 6.7500 2.4626 38 1 1.7204 5.7521 1.9550 39 1 1.9580 4.3793 4.0062 40 1 3.3417 5.3772 4.5139 41 1 1.1426 7.0832 4.0356 42 1 -0.7449 7.6365 8.0972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716207305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:52 Heat of formation + Delta-G solvation = -31.978490 kcal Electronic energy + Delta-G solvation = -21182.553375 eV Core-core repulsion = 17971.725615 eV Total energy + Delta-G solvation = -3210.827761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15316 -38.20239 -36.13137 -35.22789 -34.60565 -31.75936 -30.81161 -30.44404 -28.19173 -24.81056 -23.55351 -22.95408 -22.62231 -22.16149 -21.16535 -18.79484 -17.85978 -17.40793 -16.37472 -15.94007 -15.61323 -15.42988 -14.48229 -14.33727 -14.04272 -13.86396 -13.64237 -13.51574 -13.03380 -12.75655 -12.69048 -12.54506 -12.44554 -12.30172 -11.90541 -11.49551 -11.31892 -11.24145 -11.12584 -11.02911 -10.96723 -10.68449 -10.56433 -10.12270 -9.55973 -9.49416 -9.16981 -8.83919 -8.43955 -7.18437 -5.71533 -3.07134 2.66625 3.07213 3.37990 3.42072 3.46089 3.49826 3.73465 4.40213 4.58383 4.64558 4.75447 4.81056 4.91943 4.98685 5.09839 5.16248 5.22352 5.25814 5.30831 5.42252 5.51650 5.55507 5.63265 5.65744 5.68421 5.75009 5.78386 5.84872 5.85255 6.04404 6.09045 6.12254 6.59200 6.72435 6.92507 7.18919 7.60317 8.04383 8.46636 8.48343 9.25979 9.98273 10.18060 11.46979 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.004515 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.566877 B = 6200.399062 C = 7289.883362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.050 3.950 5 H 0.116 0.884 6 C -0.161 4.161 7 C -0.193 4.193 8 H 0.127 0.873 9 C 0.538 3.462 10 O -0.506 6.506 11 N -0.609 5.609 12 C 0.105 3.895 13 C -0.170 4.170 14 C 0.107 3.893 15 C 0.147 3.853 16 N -0.754 5.754 17 C -0.241 4.241 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.935 5.935 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.025 0.975 41 H 0.361 0.639 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 -11.230 -19.989 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.240 6.240 4 C -0.010 4.010 5 H 0.133 0.867 6 C -0.199 4.199 7 C -0.214 4.214 8 H 0.145 0.855 9 C 0.324 3.676 10 O -0.379 6.379 11 N -0.343 5.343 12 C -0.018 4.018 13 C -0.228 4.228 14 C -0.016 4.016 15 C 0.019 3.981 16 N -0.400 5.400 17 C -0.371 4.371 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.193 0.807 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.424 -11.264 -19.779 25.931 hybrid contribution -0.144 0.957 -0.446 1.065 sum 12.280 -10.308 -20.224 25.808 Atomic orbital electron populations 1.21710 0.93521 1.01882 1.03674 1.22538 0.96005 0.83937 0.99564 1.88195 1.16870 1.25439 1.93508 1.22550 0.83804 0.92897 1.01748 0.86678 1.23406 1.02822 1.02645 0.91032 1.22812 1.01388 1.00248 0.96988 0.85514 1.19465 0.88482 0.81223 0.78393 1.90789 1.15386 1.74538 1.57200 1.47864 1.06780 1.22939 1.56730 1.21558 0.80467 1.00761 0.99043 1.22201 1.01154 1.00984 0.98461 1.21657 0.94027 0.90913 0.94998 1.20892 0.93357 0.93698 0.90173 1.42568 1.55654 1.30270 1.11501 1.19044 1.22210 1.09957 0.85910 0.89277 1.24662 0.99692 0.98877 0.95937 1.69706 1.38537 1.38242 1.11869 0.86523 0.79170 0.83074 0.79640 1.20976 1.21710 1.20359 0.91300 0.91965 0.91314 0.93693 0.93397 0.87756 0.87343 0.90035 0.90566 0.91709 0.92400 0.92292 0.90814 0.89943 0.95103 0.95717 0.80697 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.60 6.53 37.16 0.24 0.84 16 3 O -0.32 -4.55 8.48 -57.36 -0.49 -5.03 16 4 C 0.05 0.53 6.41 -26.70 -0.17 0.35 16 5 H 0.12 0.85 7.93 -51.93 -0.41 0.44 16 6 C -0.16 -1.46 10.19 -26.69 -0.27 -1.73 16 7 C -0.19 -2.12 5.29 -91.77 -0.49 -2.60 16 8 H 0.13 1.04 6.44 -51.93 -0.33 0.71 16 9 C 0.54 8.43 7.46 -10.98 -0.08 8.35 16 10 O -0.51 -10.27 14.50 -16.57 -0.24 -10.51 16 11 N -0.61 -8.79 2.47 -173.69 -0.43 -9.21 16 12 C 0.11 1.08 5.95 -4.05 -0.02 1.05 16 13 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 14 C 0.11 1.85 5.52 -4.04 -0.02 1.82 16 15 C 0.15 3.14 6.58 -4.04 -0.03 3.11 16 16 N -0.75 -19.21 5.41 -59.91 -0.32 -19.54 16 17 C -0.24 -7.21 10.47 -15.06 -0.16 -7.37 16 18 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.94 -30.30 13.97 55.49 0.78 -29.53 16 21 Si 0.89 22.91 27.74 -169.99 -4.71 18.20 16 22 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.84 8.07 -51.93 -0.42 0.43 16 33 H 0.08 0.62 6.00 -51.93 -0.31 0.31 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 38 H 0.08 1.57 7.42 -51.93 -0.39 1.18 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.36 8.86 5.53 -40.82 -0.23 8.63 16 42 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -36.71 347.24 -7.69 -44.40 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.17 Total: 4.42 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.33 Total: 1.58 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.02 Total: -58.28 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.73 Total: -15.54 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.71 -7.69 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716207305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.417 kcal (2) G-P(sol) polarization free energy of solvation -36.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds