Wall clock time and date at job start Mon Mar 30 2020 00:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47348 * 2 1 4 4 C 1.42895 * 114.00597 * 180.02562 * 3 2 1 5 5 H 1.09007 * 115.55783 * 355.68876 * 4 3 2 6 6 C 1.53073 * 117.51923 * 141.38842 * 4 3 2 7 7 C 1.52992 * 117.50045 * 210.00354 * 4 3 2 8 8 H 1.09000 * 117.50138 * 144.99468 * 7 4 3 9 9 C 1.50700 * 117.49949 * 359.97438 * 7 4 3 10 10 O 1.21279 * 120.00113 * 0.09194 * 9 7 4 11 11 N 1.34784 * 119.99961 * 180.08962 * 9 7 4 12 12 C 1.46493 * 119.99864 * 359.72839 * 11 9 7 13 13 C 1.53000 * 109.47637 * 90.00039 * 12 11 9 14 14 C 1.46494 * 119.99635 * 180.02562 * 11 9 7 15 15 C 1.53002 * 109.47325 * 90.00335 * 14 11 9 16 16 N 1.46499 * 109.46936 * 179.97438 * 15 14 11 17 17 C 1.36938 * 119.99478 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00412 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99950 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00067 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99767 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47506 * 89.99918 * 21 19 17 23 23 H 1.48498 * 109.46753 * 210.00068 * 21 19 17 24 24 H 1.48493 * 109.46895 * 329.99409 * 21 19 17 25 25 H 1.08997 * 109.47032 * 299.99727 * 1 2 3 26 26 H 1.08994 * 109.47076 * 60.00266 * 1 2 3 27 27 H 1.09003 * 109.46622 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46719 * 240.00007 * 2 1 3 29 29 H 1.08996 * 109.47372 * 120.00450 * 2 1 3 30 30 H 1.09000 * 117.51066 * 0.02562 * 6 4 3 31 31 H 1.08996 * 117.51507 * 214.95766 * 6 4 3 32 32 H 1.09002 * 109.47192 * 209.99937 * 12 11 9 33 33 H 1.08996 * 109.47342 * 329.99648 * 12 11 9 34 34 H 1.08994 * 109.47425 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.46747 * 300.00171 * 13 12 11 36 36 H 1.08996 * 109.47074 * 59.99445 * 13 12 11 37 37 H 1.09003 * 109.47006 * 210.00121 * 14 11 9 38 38 H 1.09004 * 109.47665 * 329.99813 * 14 11 9 39 39 H 1.08998 * 109.46465 * 299.99693 * 15 14 11 40 40 H 1.08993 * 109.47021 * 59.99589 * 15 14 11 41 41 H 0.96994 * 120.00305 * 0.02562 * 16 15 14 42 42 H 0.97000 * 119.99998 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9772 0.5197 0.0730 6 6 4.0518 2.5736 -0.8478 7 6 4.0426 2.6874 0.6779 8 1 4.9911 2.5545 1.1982 9 6 3.0966 3.6850 1.2953 10 8 1.8995 3.4977 1.2440 11 7 3.5811 4.7854 1.9045 12 6 5.0273 5.0086 1.9717 13 6 5.4786 5.8021 0.7438 14 6 2.6615 5.7548 2.5050 15 6 2.4007 5.3744 3.9639 16 7 1.4816 6.3443 4.5646 17 6 1.1003 6.2069 5.8726 18 1 1.4774 5.3839 6.4615 19 6 0.2298 7.1261 6.4420 20 7 -0.1363 6.9944 7.6994 21 14 -0.4220 8.5501 5.4237 22 1 -1.6837 8.1435 4.7545 23 1 -0.6838 9.7129 6.3094 24 1 0.5836 8.9260 4.3977 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3736 3.2204 -1.4045 31 1 5.0063 2.3657 -1.3313 32 1 5.2668 5.5697 2.8750 33 1 5.5426 4.0484 1.9932 34 1 6.5546 5.9686 0.7941 35 1 5.2392 5.2410 -0.1595 36 1 4.9634 6.7623 0.7223 37 1 3.1042 6.7500 2.4626 38 1 1.7204 5.7521 1.9550 39 1 1.9580 4.3793 4.0062 40 1 3.3417 5.3772 4.5139 41 1 1.1426 7.0832 4.0356 42 1 -0.7449 7.6365 8.0972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716207305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:51 Heat of formation + Delta-G solvation = -57.137200 kcal Electronic energy + Delta-G solvation = -21183.644339 eV Core-core repulsion = 17971.725615 eV Total energy + Delta-G solvation = -3211.918724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23537 -39.14665 -37.51797 -36.45520 -36.03248 -33.78295 -31.78174 -31.62035 -29.71303 -26.32412 -24.62907 -24.00940 -23.75809 -23.08739 -22.73092 -20.09579 -19.48574 -18.67745 -17.55290 -17.01847 -16.61636 -16.40952 -16.30904 -15.72757 -15.38687 -15.28856 -14.90880 -14.77089 -14.55369 -13.95793 -13.69494 -13.59089 -13.40163 -13.28935 -13.05257 -13.01381 -12.87765 -12.60430 -12.35778 -12.13438 -12.11580 -12.00472 -11.85895 -11.78879 -11.35375 -11.05234 -10.67284 -10.00781 -9.66309 -9.40219 -8.08221 -5.44143 1.34448 1.40063 1.46461 1.58321 1.96939 2.44586 2.63326 2.90808 3.22699 3.52418 3.72416 3.84702 3.90645 4.05868 4.12609 4.13400 4.19406 4.21166 4.38752 4.46057 4.48888 4.49510 4.51520 4.65214 4.82504 4.88248 4.91054 4.98763 5.01151 5.03222 5.04637 5.09398 5.25115 5.41551 5.58496 5.68864 6.14759 6.41338 6.51288 6.99829 7.31938 7.73201 7.94981 9.13206 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.004515 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.566877 B = 6200.399062 C = 7289.883362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.367 6.367 4 C 0.033 3.967 5 H 0.151 0.849 6 C -0.138 4.138 7 C -0.201 4.201 8 H 0.161 0.839 9 C 0.526 3.474 10 O -0.566 6.566 11 N -0.607 5.607 12 C 0.097 3.903 13 C -0.162 4.162 14 C 0.120 3.880 15 C 0.152 3.848 16 N -0.755 5.755 17 C -0.244 4.244 18 H 0.052 0.948 19 C -0.060 4.060 20 N -0.982 5.982 21 Si 0.959 3.041 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.247 1.247 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.000 1.000 40 H 0.033 0.967 41 H 0.368 0.632 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.798 -11.071 -22.515 29.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.285 6.285 4 C -0.025 4.025 5 H 0.169 0.831 6 C -0.175 4.175 7 C -0.222 4.222 8 H 0.179 0.821 9 C 0.315 3.685 10 O -0.443 6.443 11 N -0.341 5.341 12 C -0.024 4.024 13 C -0.221 4.221 14 C -0.004 4.004 15 C 0.025 3.975 16 N -0.402 5.402 17 C -0.375 4.375 18 H 0.070 0.930 19 C -0.251 4.251 20 N -0.631 5.631 21 Si 0.785 3.215 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.171 1.171 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.170 0.830 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.018 0.982 40 H 0.051 0.949 41 H 0.201 0.799 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.048 -11.112 -22.341 29.138 hybrid contribution -0.904 0.806 0.396 1.275 sum 14.144 -10.305 -21.944 28.068 Atomic orbital electron populations 1.21746 0.94260 1.03051 1.01759 1.22693 0.95580 0.83115 1.01067 1.88151 1.19251 1.27321 1.93814 1.23043 0.82730 0.94474 1.02281 0.83132 1.23488 1.03920 1.00771 0.89348 1.22877 1.01544 0.99327 0.98478 0.82146 1.20410 0.88600 0.81744 0.77730 1.90762 1.18187 1.75887 1.59497 1.48015 1.08256 1.22079 1.55714 1.21902 0.77774 1.02674 1.00048 1.22142 1.02560 0.99880 0.97469 1.21318 0.94449 0.92823 0.91809 1.20932 0.92306 0.91314 0.92961 1.42524 1.56312 1.31249 1.10074 1.18988 1.22129 1.08869 0.87492 0.93019 1.25554 1.00095 1.02229 0.97266 1.69887 1.39500 1.39689 1.14061 0.85362 0.78887 0.78818 0.78465 1.20768 1.21337 1.17099 0.94439 0.92568 0.88597 0.90916 0.92891 0.90027 0.83002 0.90052 0.87862 0.89099 0.92123 0.93606 0.88386 0.92126 0.98237 0.94865 0.79877 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 10.28 71.98 0.74 -2.51 16 2 C 0.05 1.06 6.53 71.98 0.47 1.53 16 3 O -0.37 -10.32 8.48 -127.82 -1.08 -11.40 16 4 C 0.03 0.63 6.41 30.62 0.20 0.83 16 5 H 0.15 1.66 7.93 -2.38 -0.02 1.64 16 6 C -0.14 -2.06 10.19 30.62 0.31 -1.75 16 7 C -0.20 -3.92 5.29 -11.54 -0.06 -3.98 16 8 H 0.16 1.94 6.44 -2.39 -0.02 1.92 16 9 C 0.53 16.35 7.46 87.66 0.65 17.00 16 10 O -0.57 -23.97 14.50 18.13 0.26 -23.71 16 11 N -0.61 -16.92 2.47 -821.82 -2.03 -18.95 16 12 C 0.10 1.72 5.95 86.38 0.51 2.23 16 13 C -0.16 -2.23 10.24 71.98 0.74 -1.49 16 14 C 0.12 4.12 5.52 86.38 0.48 4.59 16 15 C 0.15 6.62 6.58 86.38 0.57 7.19 16 16 N -0.76 -38.74 5.41 -343.46 -1.86 -40.60 16 17 C -0.24 -14.98 10.47 84.03 0.88 -14.10 16 18 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 19 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.98 -65.13 13.97 21.65 0.30 -64.83 16 21 Si 0.96 47.25 27.74 68.60 1.90 49.15 16 22 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.15 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.10 1.27 6.00 -2.39 -0.01 1.26 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 2.88 8.07 -2.39 -0.02 2.86 16 38 H 0.06 2.36 7.42 -2.38 -0.02 2.34 16 39 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.37 17.68 5.53 -92.71 -0.51 17.17 16 42 H 0.26 16.32 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -84.90 347.24 3.87 -81.03 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.42 Total: 22.99 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.95 Total: 6.32 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -3.59 Total: -124.38 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.82 Total: -35.11 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.15 kcal Total: -84.90 3.87 -81.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716207305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.895 kcal (2) G-P(sol) polarization free energy of solvation -84.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds