Wall clock time and date at job start Mon Mar 30 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47121 * 2 1 4 4 C 1.42905 * 113.99830 * 180.02562 * 3 2 1 5 5 H 1.08996 * 115.56391 * 4.31298 * 4 3 2 6 6 C 1.53071 * 117.51233 * 218.60458 * 4 3 2 7 7 C 1.52993 * 59.98417 * 252.52614 * 6 4 3 8 8 H 1.08997 * 117.49713 * 252.49711 * 7 6 4 9 9 C 1.50698 * 117.49869 * 107.50690 * 7 6 4 10 10 O 1.21288 * 119.99688 * 291.24796 * 9 7 6 11 11 N 1.34774 * 120.00423 * 111.24631 * 9 7 6 12 12 C 1.46499 * 120.00002 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47136 * 269.99833 * 12 11 9 14 14 C 1.46504 * 120.00336 * 179.97438 * 11 9 7 15 15 C 1.53006 * 109.46883 * 90.00128 * 14 11 9 16 16 N 1.46496 * 109.46995 * 180.02562 * 15 14 11 17 17 C 1.36937 * 119.99946 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00046 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00249 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99665 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47326 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47536 * 120.00263 * 21 19 17 24 24 H 1.48509 * 109.47141 * 240.00319 * 21 19 17 25 25 H 1.08998 * 109.46614 * 299.99713 * 1 2 3 26 26 H 1.08994 * 109.47104 * 59.99497 * 1 2 3 27 27 H 1.08994 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47125 * 240.00389 * 2 1 3 29 29 H 1.08996 * 109.47593 * 120.00360 * 2 1 3 30 30 H 1.09000 * 117.49160 * 145.03615 * 6 4 3 31 31 H 1.08997 * 117.51327 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.47241 * 29.99713 * 12 11 9 33 33 H 1.09000 * 109.47127 * 149.99471 * 12 11 9 34 34 H 1.09000 * 109.47636 * 179.97438 * 13 12 11 35 35 H 1.09000 * 109.46958 * 300.00053 * 13 12 11 36 36 H 1.09003 * 109.47092 * 59.99393 * 13 12 11 37 37 H 1.09001 * 109.46891 * 330.00562 * 14 11 9 38 38 H 1.08993 * 109.47378 * 209.99934 * 14 11 9 39 39 H 1.09001 * 109.46801 * 300.00349 * 15 14 11 40 40 H 1.09001 * 109.46998 * 59.99945 * 15 14 11 41 41 H 0.96998 * 120.00192 * 359.97438 * 16 15 14 42 42 H 0.97001 * 119.99952 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.9772 0.5198 -0.0749 6 6 4.0525 2.5734 0.8464 7 6 4.0421 2.6876 -0.6792 8 1 4.9902 2.5548 -1.2003 9 6 3.0957 3.6852 -1.2959 10 8 1.8986 3.4977 -1.2439 11 7 3.5796 4.7857 -1.9051 12 6 5.0256 5.0120 -1.9684 13 6 5.4714 5.8081 -0.7403 14 6 2.6596 5.7552 -2.5051 15 6 2.2806 6.8105 -1.4640 16 7 1.3602 7.7796 -2.0637 17 6 0.8823 8.8230 -1.3166 18 1 1.1843 8.9317 -0.2854 19 6 0.0106 9.7417 -1.8850 20 7 -0.3571 9.6095 -3.1419 21 14 -0.6408 11.1654 -0.8661 22 1 -0.0804 11.0885 0.5070 23 1 -0.2378 12.4490 -1.4946 24 1 -2.1225 11.0900 -0.8004 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.0073 2.3650 1.3290 31 1 3.3748 3.2195 1.4044 32 1 5.5430 4.0528 -1.9870 33 1 5.2665 5.5723 -2.8717 34 1 6.5474 5.9761 -0.7870 35 1 4.9541 6.7673 -0.7216 36 1 5.2304 5.2478 0.1631 37 1 1.7606 5.2409 -2.8449 38 1 3.1440 6.2391 -3.3531 39 1 1.7963 6.3265 -0.6158 40 1 3.1796 7.3248 -1.1241 41 1 1.0898 7.6827 -2.9902 42 1 -0.9659 10.2516 -3.5392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716207307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:55 Heat of formation + Delta-G solvation = -35.137069 kcal Electronic energy + Delta-G solvation = -21221.748527 eV Core-core repulsion = 18010.783800 eV Total energy + Delta-G solvation = -3210.964727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08194 -38.15165 -36.05459 -35.15972 -34.37520 -31.58119 -30.78929 -30.22147 -27.86635 -24.72884 -23.40189 -22.94221 -22.71844 -22.15323 -21.14594 -18.75990 -17.77974 -17.07969 -16.26666 -15.78415 -15.57373 -15.00282 -14.89656 -14.25355 -13.97545 -13.76903 -13.29135 -13.16945 -13.01156 -12.89293 -12.67721 -12.54793 -12.38805 -12.24616 -11.77550 -11.29596 -11.21552 -11.08428 -11.06288 -10.86360 -10.81079 -10.55933 -10.45121 -10.01971 -9.69959 -9.41621 -9.12316 -8.80149 -8.35332 -6.85288 -5.70028 -2.98555 2.73948 3.15611 3.42008 3.48181 3.53665 3.56147 3.80988 4.46052 4.63877 4.67747 4.79957 4.86543 4.98004 4.99584 5.15595 5.24447 5.25878 5.28850 5.39912 5.51614 5.60160 5.65960 5.74657 5.76199 5.85494 5.86115 5.88446 5.94765 6.12721 6.15297 6.17527 6.34541 6.73924 6.89660 7.04907 7.22441 7.69647 7.76854 8.48390 8.56455 9.59558 10.16962 10.52084 11.53162 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.004217 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.190411 B = 6638.017448 C = 7521.536851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.048 3.952 5 H 0.115 0.885 6 C -0.160 4.160 7 C -0.193 4.193 8 H 0.126 0.874 9 C 0.537 3.463 10 O -0.506 6.506 11 N -0.609 5.609 12 C 0.109 3.891 13 C -0.175 4.175 14 C 0.110 3.890 15 C 0.143 3.857 16 N -0.731 5.731 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.856 -19.618 4.957 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.239 6.239 4 C -0.012 4.012 5 H 0.132 0.868 6 C -0.198 4.198 7 C -0.214 4.214 8 H 0.143 0.857 9 C 0.323 3.677 10 O -0.380 6.380 11 N -0.343 5.343 12 C -0.015 4.015 13 C -0.234 4.234 14 C -0.013 4.013 15 C 0.014 3.986 16 N -0.376 5.376 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.217 0.783 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.019 -19.455 5.116 23.962 hybrid contribution -0.107 0.741 0.170 0.768 sum 12.913 -18.714 5.286 23.343 Atomic orbital electron populations 1.21707 0.93546 1.01776 1.03757 1.22528 0.95995 0.84059 0.99462 1.88226 1.16908 1.25242 1.93523 1.22552 0.83741 0.92812 1.02062 0.86771 1.23416 1.02858 1.02474 0.91050 1.22812 1.01237 1.00175 0.97211 0.85654 1.19447 0.88462 0.81247 0.78503 1.90792 1.15354 1.75347 1.56467 1.47911 1.06785 1.22246 1.57402 1.21537 0.80508 1.00258 0.99167 1.22307 1.01021 1.01774 0.98266 1.21670 0.93690 0.89914 0.96001 1.20985 0.93159 0.89702 0.94706 1.42241 1.53849 1.28481 1.13002 1.19260 1.21091 1.01616 0.94630 0.91213 1.24737 1.00442 0.99567 0.96333 1.69675 1.38604 1.38087 1.11929 0.86102 0.78538 0.82324 0.79169 1.20581 1.21883 1.21843 0.91807 0.91421 0.91385 0.93587 0.93677 0.87334 0.87538 0.90859 0.90436 0.91980 0.91287 0.92428 0.89904 0.90752 0.96075 0.96226 0.78327 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.60 6.53 37.16 0.24 0.84 16 3 O -0.32 -4.65 8.48 -57.36 -0.49 -5.14 16 4 C 0.05 0.53 6.41 -26.70 -0.17 0.35 16 5 H 0.11 0.86 7.93 -51.93 -0.41 0.44 16 6 C -0.16 -1.63 10.19 -26.70 -0.27 -1.90 16 7 C -0.19 -2.21 5.28 -91.78 -0.48 -2.69 16 8 H 0.13 1.04 6.44 -51.93 -0.33 0.70 16 9 C 0.54 8.78 7.46 -10.99 -0.08 8.70 16 10 O -0.51 -10.67 14.50 -16.58 -0.24 -10.91 16 11 N -0.61 -9.27 2.47 -173.69 -0.43 -9.70 16 12 C 0.11 1.19 6.00 -4.04 -0.02 1.16 16 13 C -0.18 -1.90 10.24 37.16 0.38 -1.51 16 14 C 0.11 2.02 5.57 -4.04 -0.02 2.00 16 15 C 0.14 3.19 6.58 -4.04 -0.03 3.16 16 16 N -0.73 -19.85 5.60 -59.91 -0.34 -20.19 16 17 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -29.25 13.06 55.49 0.72 -28.53 16 21 Si 0.91 23.24 29.55 -169.99 -5.02 18.21 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.60 6.00 -51.93 -0.31 0.29 16 33 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.92 6.27 -51.93 -0.33 0.60 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.71 7.42 -51.93 -0.39 1.32 16 38 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.43 6.27 -51.93 -0.33 0.10 16 41 H 0.38 10.78 7.67 -40.82 -0.31 10.47 16 42 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -36.06 346.34 -7.90 -43.96 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.00 Total: 5.81 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.32 Total: 1.26 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.04 Total: -58.41 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.73 Total: -16.05 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.06 -7.90 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716207307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.823 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds