Wall clock time and date at job start Mon Mar 30 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47121 * 2 1 4 4 C 1.42905 * 113.99830 * 180.02562 * 3 2 1 5 5 H 1.08996 * 115.56391 * 4.31298 * 4 3 2 6 6 C 1.53071 * 117.51233 * 218.60458 * 4 3 2 7 7 C 1.52993 * 59.98417 * 252.52614 * 6 4 3 8 8 H 1.08997 * 117.49713 * 252.49711 * 7 6 4 9 9 C 1.50698 * 117.49869 * 107.50690 * 7 6 4 10 10 O 1.21288 * 119.99688 * 291.24796 * 9 7 6 11 11 N 1.34774 * 120.00423 * 111.24631 * 9 7 6 12 12 C 1.46499 * 120.00002 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47136 * 269.99833 * 12 11 9 14 14 C 1.46504 * 120.00336 * 179.97438 * 11 9 7 15 15 C 1.53006 * 109.46883 * 90.00128 * 14 11 9 16 16 N 1.46496 * 109.46995 * 180.02562 * 15 14 11 17 17 C 1.36937 * 119.99946 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00046 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00249 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99665 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47326 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47536 * 120.00263 * 21 19 17 24 24 H 1.48509 * 109.47141 * 240.00319 * 21 19 17 25 25 H 1.08998 * 109.46614 * 299.99713 * 1 2 3 26 26 H 1.08994 * 109.47104 * 59.99497 * 1 2 3 27 27 H 1.08994 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47125 * 240.00389 * 2 1 3 29 29 H 1.08996 * 109.47593 * 120.00360 * 2 1 3 30 30 H 1.09000 * 117.49160 * 145.03615 * 6 4 3 31 31 H 1.08997 * 117.51327 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.47241 * 29.99713 * 12 11 9 33 33 H 1.09000 * 109.47127 * 149.99471 * 12 11 9 34 34 H 1.09000 * 109.47636 * 179.97438 * 13 12 11 35 35 H 1.09000 * 109.46958 * 300.00053 * 13 12 11 36 36 H 1.09003 * 109.47092 * 59.99393 * 13 12 11 37 37 H 1.09001 * 109.46891 * 330.00562 * 14 11 9 38 38 H 1.08993 * 109.47378 * 209.99934 * 14 11 9 39 39 H 1.09001 * 109.46801 * 300.00349 * 15 14 11 40 40 H 1.09001 * 109.46998 * 59.99945 * 15 14 11 41 41 H 0.96998 * 120.00192 * 359.97438 * 16 15 14 42 42 H 0.97001 * 119.99952 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.9772 0.5198 -0.0749 6 6 4.0525 2.5734 0.8464 7 6 4.0421 2.6876 -0.6792 8 1 4.9902 2.5548 -1.2003 9 6 3.0957 3.6852 -1.2959 10 8 1.8986 3.4977 -1.2439 11 7 3.5796 4.7857 -1.9051 12 6 5.0256 5.0120 -1.9684 13 6 5.4714 5.8081 -0.7403 14 6 2.6596 5.7552 -2.5051 15 6 2.2806 6.8105 -1.4640 16 7 1.3602 7.7796 -2.0637 17 6 0.8823 8.8230 -1.3166 18 1 1.1843 8.9317 -0.2854 19 6 0.0106 9.7417 -1.8850 20 7 -0.3571 9.6095 -3.1419 21 14 -0.6408 11.1654 -0.8661 22 1 -0.0804 11.0885 0.5070 23 1 -0.2378 12.4490 -1.4946 24 1 -2.1225 11.0900 -0.8004 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.0073 2.3650 1.3290 31 1 3.3748 3.2195 1.4044 32 1 5.5430 4.0528 -1.9870 33 1 5.2665 5.5723 -2.8717 34 1 6.5474 5.9761 -0.7870 35 1 4.9541 6.7673 -0.7216 36 1 5.2304 5.2478 0.1631 37 1 1.7606 5.2409 -2.8449 38 1 3.1440 6.2391 -3.3531 39 1 1.7963 6.3265 -0.6158 40 1 3.1796 7.3248 -1.1241 41 1 1.0898 7.6827 -2.9902 42 1 -0.9659 10.2516 -3.5392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716207307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:55 Heat of formation + Delta-G solvation = -59.583108 kcal Electronic energy + Delta-G solvation = -21222.808587 eV Core-core repulsion = 18010.783800 eV Total energy + Delta-G solvation = -3212.024787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23035 -39.13994 -37.46715 -36.34162 -36.01137 -33.52951 -31.67108 -31.51701 -29.55187 -26.34806 -24.88023 -23.87124 -23.73962 -23.09058 -22.74967 -19.93497 -19.22433 -18.74702 -17.43947 -16.88719 -16.69437 -16.40101 -16.20692 -15.74544 -15.37334 -15.11976 -14.91734 -14.83980 -14.37375 -13.96852 -13.70895 -13.54114 -13.33342 -13.19472 -13.02941 -12.94269 -12.75965 -12.57398 -12.36626 -12.11234 -12.09606 -11.99195 -11.86190 -11.73460 -11.34638 -10.99515 -10.65803 -10.00985 -9.66635 -9.09338 -8.00539 -5.31724 1.43458 1.46082 1.55992 1.58986 1.98235 2.53407 2.64627 2.92552 3.32435 3.55778 3.84054 3.91594 4.01080 4.06683 4.17283 4.20137 4.20967 4.23121 4.38152 4.47316 4.50506 4.50573 4.53203 4.65950 4.82757 4.85252 4.89177 4.97254 5.01788 5.03048 5.07877 5.14380 5.25894 5.40386 5.47099 5.63070 6.21084 6.43324 6.53555 7.26693 7.33332 7.97991 8.24393 9.23191 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.004217 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.190411 B = 6638.017448 C = 7521.536851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.370 6.370 4 C 0.040 3.960 5 H 0.158 0.842 6 C -0.149 4.149 7 C -0.196 4.196 8 H 0.168 0.832 9 C 0.524 3.476 10 O -0.568 6.568 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.171 4.171 14 C 0.123 3.877 15 C 0.152 3.848 16 N -0.744 5.744 17 C -0.252 4.252 18 H 0.071 0.929 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.979 3.021 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.291 1.291 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.093 0.907 39 H -0.009 1.009 40 H 0.033 0.967 41 H 0.375 0.625 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.724 -20.759 5.800 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.288 6.288 4 C -0.019 4.019 5 H 0.175 0.825 6 C -0.187 4.187 7 C -0.217 4.217 8 H 0.186 0.814 9 C 0.314 3.686 10 O -0.446 6.446 11 N -0.340 5.340 12 C -0.019 4.019 13 C -0.229 4.229 14 C -0.001 4.001 15 C 0.025 3.975 16 N -0.387 5.387 17 C -0.384 4.384 18 H 0.089 0.911 19 C -0.264 4.264 20 N -0.618 5.618 21 Si 0.807 3.193 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.219 1.219 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.171 0.829 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.009 0.991 40 H 0.051 0.949 41 H 0.207 0.793 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.956 -20.610 5.978 26.742 hybrid contribution -0.984 1.062 -0.075 1.449 sum 14.972 -19.549 5.903 25.321 Atomic orbital electron populations 1.21752 0.94381 1.03061 1.01693 1.22708 0.95499 0.83022 1.01235 1.88185 1.19338 1.27496 1.93781 1.23047 0.82691 0.94404 1.01771 0.82527 1.23488 1.03987 1.01332 0.89876 1.22886 1.01632 0.99148 0.98054 0.81438 1.20461 0.88631 0.81873 0.77650 1.90765 1.18313 1.76789 1.58685 1.48050 1.08271 1.21101 1.56610 1.21915 0.77669 1.02650 0.99715 1.22263 1.02632 0.99852 0.98161 1.21287 0.93923 0.89413 0.95435 1.20998 0.92149 0.89695 0.94678 1.42427 1.54683 1.28957 1.12628 1.19617 1.21400 1.02403 0.94955 0.91123 1.25638 1.00798 1.02405 0.97607 1.69830 1.39236 1.39146 1.13585 0.85003 0.77458 0.78734 0.78108 1.19215 1.21118 1.21850 0.93150 0.94153 0.88397 0.92233 0.91167 0.82930 0.90986 0.86925 0.89336 0.88780 0.94604 0.92566 0.92853 0.88848 0.99142 0.94919 0.79306 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 10.28 71.98 0.74 -2.52 16 2 C 0.05 1.04 6.53 71.98 0.47 1.51 16 3 O -0.37 -10.71 8.48 -127.82 -1.08 -11.79 16 4 C 0.04 0.77 6.41 30.62 0.20 0.97 16 5 H 0.16 1.63 7.93 -2.39 -0.02 1.61 16 6 C -0.15 -2.67 10.19 30.62 0.31 -2.36 16 7 C -0.20 -3.99 5.28 -11.54 -0.06 -4.05 16 8 H 0.17 1.89 6.44 -2.39 -0.02 1.87 16 9 C 0.52 17.20 7.46 87.66 0.65 17.86 16 10 O -0.57 -25.31 14.50 18.11 0.26 -25.04 16 11 N -0.61 -18.21 2.47 -821.81 -2.03 -20.24 16 12 C 0.10 1.93 6.00 86.38 0.52 2.44 16 13 C -0.17 -3.28 10.24 71.98 0.74 -2.54 16 14 C 0.12 4.70 5.57 86.38 0.48 5.18 16 15 C 0.15 7.08 6.58 86.38 0.57 7.65 16 16 N -0.74 -41.85 5.60 -343.44 -1.92 -43.78 16 17 C -0.25 -15.25 9.99 84.03 0.84 -14.41 16 18 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 20 N -0.97 -61.74 13.06 21.65 0.28 -61.46 16 21 Si 0.98 48.19 29.55 68.60 2.03 50.22 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.11 1.29 6.00 -2.39 -0.01 1.28 16 33 H 0.09 1.52 7.89 -2.39 -0.02 1.50 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.03 0.92 6.27 -2.39 -0.01 0.90 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 2.34 7.42 -2.39 -0.02 2.33 16 38 H 0.09 3.17 7.89 -2.39 -0.02 3.15 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.03 1.45 6.27 -2.39 -0.01 1.44 16 41 H 0.38 21.98 7.67 -92.71 -0.71 21.27 16 42 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -83.56 346.34 3.74 -79.82 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.29 Total: 26.44 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 5.92 Total: 5.84 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -3.67 Total: -125.48 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.82 Total: -36.83 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -83.56 3.74 -79.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716207307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.232 kcal (2) G-P(sol) polarization free energy of solvation -83.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds