Wall clock time and date at job start Mon Mar 30 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47612 * 2 1 4 4 C 1.42896 * 114.00317 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47263 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47186 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99936 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00347 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00573 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46990 * 325.00265 * 9 8 6 11 11 C 1.52997 * 109.47430 * 204.99724 * 9 8 6 12 12 N 1.46510 * 109.46971 * 55.00029 * 11 9 8 13 13 C 1.36928 * 119.99813 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00208 * 0.02562 * 13 12 11 15 15 C 1.38818 * 119.99781 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99656 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00029 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47394 * 89.99690 * 17 15 13 19 19 H 1.48502 * 109.47410 * 209.99835 * 17 15 13 20 20 H 1.48506 * 109.47406 * 329.99987 * 17 15 13 21 21 C 1.53003 * 109.47194 * 84.99642 * 9 8 6 22 22 C 1.53001 * 117.51964 * 231.28709 * 21 9 8 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 9 24 24 H 1.09003 * 109.47096 * 59.99550 * 1 2 3 25 25 H 1.08998 * 109.47612 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47047 * 300.00564 * 1 2 3 27 27 H 1.09003 * 109.47330 * 239.99431 * 2 1 3 28 28 H 1.09008 * 109.47122 * 119.99982 * 2 1 3 29 29 H 1.09009 * 109.47029 * 59.99829 * 4 3 2 30 30 H 1.09000 * 109.47318 * 300.00215 * 4 3 2 31 31 H 1.08995 * 109.47186 * 60.00148 * 5 4 3 32 32 H 1.09005 * 109.46828 * 300.00198 * 5 4 3 33 33 H 0.97002 * 119.99812 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47132 * 174.99771 * 11 9 8 35 35 H 1.08998 * 109.47469 * 295.00258 * 11 9 8 36 36 H 0.96992 * 119.99894 * 0.02562 * 12 11 9 37 37 H 0.97009 * 119.99887 * 180.02562 * 16 15 13 38 38 H 1.09002 * 115.54973 * 85.58492 * 21 9 8 39 39 H 1.09001 * 117.49733 * 214.97413 * 22 21 9 40 40 H 1.08995 * 117.49577 * 359.97438 * 22 21 9 41 41 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 42 42 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 -0.0001 6 6 5.3277 3.0572 -0.0001 7 8 6.0151 2.0580 0.0008 8 7 5.9075 4.2739 -0.0002 9 6 7.3679 4.3896 0.0004 10 1 7.7963 3.5791 0.5902 11 6 7.7729 5.7332 0.6098 12 7 7.1759 5.8654 1.9412 13 6 7.4012 6.9937 2.6835 14 1 8.0185 7.7864 2.2875 15 6 6.8351 7.1191 3.9449 16 7 7.0513 8.2039 4.6582 17 14 5.7668 5.7484 4.6296 18 1 6.6151 4.7866 5.3783 19 1 4.7474 6.3245 5.5430 20 1 5.0884 5.0441 3.5119 21 6 7.8868 4.3041 -1.4364 22 6 9.0053 3.3010 -1.7256 23 6 7.5844 3.0264 -2.2219 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8341 0.9763 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 3.4224 3.4224 0.8894 32 1 3.4231 3.4213 -0.8906 33 1 5.3577 5.0731 -0.0006 34 1 8.8586 5.7824 0.6919 35 1 7.4197 6.5430 -0.0287 36 1 6.6218 5.1533 2.2970 37 1 6.6560 8.2914 5.5398 38 1 7.8982 5.2437 -1.9888 39 1 9.7526 3.5807 -2.4682 40 1 9.3720 2.7021 -0.8920 41 1 7.0160 2.2466 -1.7150 42 1 7.3968 3.1255 -3.2911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716606363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:37 Heat of formation + Delta-G solvation = -54.281331 kcal Electronic energy + Delta-G solvation = -21053.458978 eV Core-core repulsion = 17841.664093 eV Total energy + Delta-G solvation = -3211.794884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04044 -38.22267 -37.24248 -35.20438 -33.52343 -32.61343 -31.38667 -30.37089 -28.37902 -24.35070 -23.49975 -22.98820 -22.19769 -21.34610 -20.47121 -20.11349 -17.87616 -17.33636 -16.60516 -16.29696 -15.89590 -15.48724 -15.02350 -14.67709 -14.43868 -14.17445 -13.74613 -13.42060 -13.24076 -12.82071 -12.62113 -12.34545 -12.17702 -11.94755 -11.89862 -11.37721 -11.28561 -11.21030 -11.18402 -11.07023 -10.89256 -10.25086 -10.18981 -10.00852 -9.76534 -9.67671 -9.63178 -8.97349 -8.79337 -7.30606 -5.81655 -3.18135 2.71373 3.00303 3.33183 3.38057 3.42857 3.69980 4.10982 4.54810 4.70532 4.73770 4.79827 4.91493 4.95028 5.06727 5.09295 5.16319 5.20857 5.31637 5.36899 5.47680 5.49215 5.60010 5.62865 5.68139 5.73141 5.75159 5.79244 5.86571 5.88966 6.04008 6.26290 6.37000 6.41840 6.55031 6.78967 7.01289 7.68144 7.93383 8.34373 8.37272 9.15298 9.87446 10.06693 11.36485 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.005546 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.156800 B = 5047.238129 C = 7011.268206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.080 3.920 5 C -0.143 4.143 6 C 0.520 3.480 7 O -0.548 6.548 8 N -0.709 5.709 9 C 0.164 3.836 10 H 0.088 0.912 11 C 0.153 3.847 12 N -0.755 5.755 13 C -0.247 4.247 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.185 4.185 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.406 0.594 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 -14.280 -13.893 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.004 3.996 5 C -0.183 4.183 6 C 0.307 3.693 7 O -0.427 6.427 8 N -0.359 5.359 9 C 0.060 3.940 10 H 0.106 0.894 11 C 0.025 3.975 12 N -0.401 5.401 13 C -0.377 4.377 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.580 5.580 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.182 4.182 22 C -0.208 4.208 23 C -0.222 4.222 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.241 0.759 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.315 -14.578 -13.804 21.368 hybrid contribution -0.808 -0.601 0.613 1.179 sum -8.123 -15.178 -13.191 21.688 Atomic orbital electron populations 1.21749 0.93771 1.02164 1.03174 1.22437 0.95455 0.83711 1.00198 1.87816 1.21316 1.26608 1.95566 1.22094 0.80461 0.95493 1.01599 1.21488 0.92909 0.98048 1.05823 1.20297 0.89869 0.83593 0.75569 1.90617 1.65199 1.36534 1.50382 1.46017 1.07920 1.08158 1.73855 1.20878 0.79374 1.00237 0.93559 0.89388 1.20900 0.97361 0.92272 0.86950 1.42692 1.60729 1.21173 1.15548 1.19041 1.26471 0.95176 0.97000 0.89093 1.24660 1.00328 0.97054 0.96834 1.69700 1.48781 1.27120 1.12350 0.86573 0.80823 0.82329 0.78871 1.21088 1.21638 1.20450 1.22624 1.04011 0.94660 0.96944 1.22889 0.91682 1.02788 1.03417 1.23254 0.99384 1.00230 0.99368 0.91866 0.91162 0.91794 0.93401 0.93338 0.92509 0.92438 0.87912 0.88065 0.75898 0.93780 0.94846 0.80462 0.92982 0.87679 0.89100 0.88763 0.86592 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.15 0.38 -0.79 16 2 C 0.06 0.55 6.66 37.15 0.25 0.80 16 3 O -0.39 -4.78 10.34 -35.23 -0.36 -5.14 16 4 C 0.08 0.98 5.23 37.16 0.19 1.17 16 5 C -0.14 -1.71 6.07 -27.89 -0.17 -1.88 16 6 C 0.52 7.58 7.16 -10.99 -0.08 7.50 16 7 O -0.55 -9.28 13.01 5.55 0.07 -9.20 16 8 N -0.71 -10.34 4.50 -53.81 -0.24 -10.58 16 9 C 0.16 2.57 2.43 -67.93 -0.17 2.40 16 10 H 0.09 1.55 7.34 -51.93 -0.38 1.17 16 11 C 0.15 2.81 5.80 -4.04 -0.02 2.78 16 12 N -0.76 -17.38 5.24 -59.91 -0.31 -17.69 16 13 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 16 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 17 Si 0.88 22.10 27.73 -169.99 -4.71 17.39 16 18 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 21 C -0.16 -2.17 5.36 -90.61 -0.49 -2.65 16 22 C -0.17 -2.12 10.18 -26.73 -0.27 -2.39 16 23 C -0.19 -2.39 9.73 -26.73 -0.26 -2.65 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.67 8.10 -51.92 -0.42 0.25 16 30 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 5.53 8.60 -40.82 -0.35 5.18 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.36 8.32 5.20 -40.82 -0.21 8.11 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.11 1.31 8.11 -51.93 -0.42 0.89 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 41 H 0.12 1.72 5.02 -51.93 -0.26 1.46 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -32.06 344.85 -7.60 -39.66 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.13 Total: 11.22 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.88 Total: -2.61 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.22 Total: -56.51 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.29 Total: -14.35 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.06 -7.60 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716606363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.618 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds