Wall clock time and date at job start Mon Mar 30 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47612 * 2 1 4 4 C 1.42896 * 114.00317 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47263 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47186 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99936 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00347 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00573 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46990 * 325.00265 * 9 8 6 11 11 C 1.52997 * 109.47430 * 204.99724 * 9 8 6 12 12 N 1.46510 * 109.46971 * 55.00029 * 11 9 8 13 13 C 1.36928 * 119.99813 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00208 * 0.02562 * 13 12 11 15 15 C 1.38818 * 119.99781 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99656 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00029 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47394 * 89.99690 * 17 15 13 19 19 H 1.48502 * 109.47410 * 209.99835 * 17 15 13 20 20 H 1.48506 * 109.47406 * 329.99987 * 17 15 13 21 21 C 1.53003 * 109.47194 * 84.99642 * 9 8 6 22 22 C 1.53001 * 117.51964 * 231.28709 * 21 9 8 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 9 24 24 H 1.09003 * 109.47096 * 59.99550 * 1 2 3 25 25 H 1.08998 * 109.47612 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47047 * 300.00564 * 1 2 3 27 27 H 1.09003 * 109.47330 * 239.99431 * 2 1 3 28 28 H 1.09008 * 109.47122 * 119.99982 * 2 1 3 29 29 H 1.09009 * 109.47029 * 59.99829 * 4 3 2 30 30 H 1.09000 * 109.47318 * 300.00215 * 4 3 2 31 31 H 1.08995 * 109.47186 * 60.00148 * 5 4 3 32 32 H 1.09005 * 109.46828 * 300.00198 * 5 4 3 33 33 H 0.97002 * 119.99812 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47132 * 174.99771 * 11 9 8 35 35 H 1.08998 * 109.47469 * 295.00258 * 11 9 8 36 36 H 0.96992 * 119.99894 * 0.02562 * 12 11 9 37 37 H 0.97009 * 119.99887 * 180.02562 * 16 15 13 38 38 H 1.09002 * 115.54973 * 85.58492 * 21 9 8 39 39 H 1.09001 * 117.49733 * 214.97413 * 22 21 9 40 40 H 1.08995 * 117.49577 * 359.97438 * 22 21 9 41 41 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 42 42 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 -0.0001 6 6 5.3277 3.0572 -0.0001 7 8 6.0151 2.0580 0.0008 8 7 5.9075 4.2739 -0.0002 9 6 7.3679 4.3896 0.0004 10 1 7.7963 3.5791 0.5902 11 6 7.7729 5.7332 0.6098 12 7 7.1759 5.8654 1.9412 13 6 7.4012 6.9937 2.6835 14 1 8.0185 7.7864 2.2875 15 6 6.8351 7.1191 3.9449 16 7 7.0513 8.2039 4.6582 17 14 5.7668 5.7484 4.6296 18 1 6.6151 4.7866 5.3783 19 1 4.7474 6.3245 5.5430 20 1 5.0884 5.0441 3.5119 21 6 7.8868 4.3041 -1.4364 22 6 9.0053 3.3010 -1.7256 23 6 7.5844 3.0264 -2.2219 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8341 0.9763 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 3.4224 3.4224 0.8894 32 1 3.4231 3.4213 -0.8906 33 1 5.3577 5.0731 -0.0006 34 1 8.8586 5.7824 0.6919 35 1 7.4197 6.5430 -0.0287 36 1 6.6218 5.1533 2.2970 37 1 6.6560 8.2914 5.5398 38 1 7.8982 5.2437 -1.9888 39 1 9.7526 3.5807 -2.4682 40 1 9.3720 2.7021 -0.8920 41 1 7.0160 2.2466 -1.7150 42 1 7.3968 3.1255 -3.2911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716606363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:36 Heat of formation + Delta-G solvation = -76.267921 kcal Electronic energy + Delta-G solvation = -21054.412388 eV Core-core repulsion = 17841.664093 eV Total energy + Delta-G solvation = -3212.748294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20820 -39.14449 -38.36806 -36.76244 -35.02338 -33.61299 -33.17664 -31.31263 -29.85471 -25.93416 -24.72266 -23.69274 -23.21434 -22.98637 -21.61061 -21.28141 -19.80196 -18.44654 -17.54407 -17.38407 -16.97043 -16.71488 -16.49511 -16.10345 -15.50059 -15.39640 -15.04726 -14.78928 -14.61126 -14.37596 -13.86027 -13.56569 -13.22434 -13.05407 -12.94367 -12.75527 -12.68535 -12.56346 -12.27635 -12.07854 -12.02564 -12.01928 -11.84240 -11.28766 -11.13196 -11.05241 -10.79135 -10.61737 -9.99521 -9.33858 -8.04635 -5.38256 1.34160 1.37826 1.44241 1.58409 1.95842 2.45079 2.76914 3.08777 3.27987 3.41638 3.73487 3.85724 3.99196 4.04092 4.07237 4.15247 4.16047 4.26976 4.37771 4.41838 4.46778 4.50100 4.60470 4.72475 4.79296 4.83726 4.89103 4.91001 5.02621 5.04913 5.08083 5.26343 5.29137 5.36790 5.53935 5.74628 6.18037 6.18805 6.54481 7.04930 7.21620 7.79821 7.98463 9.16678 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.005546 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.156800 B = 5047.238129 C = 7011.268206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.084 3.916 5 C -0.136 4.136 6 C 0.519 3.481 7 O -0.573 6.573 8 N -0.709 5.709 9 C 0.175 3.825 10 H 0.067 0.933 11 C 0.153 3.847 12 N -0.756 5.756 13 C -0.232 4.232 14 H 0.063 0.937 15 C -0.057 4.057 16 N -0.981 5.981 17 Si 0.947 3.053 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.251 1.251 21 C -0.166 4.166 22 C -0.167 4.167 23 C -0.180 4.180 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.412 0.588 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.364 0.636 37 H 0.258 0.742 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 -15.693 -15.492 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.327 6.327 4 C 0.007 3.993 5 C -0.176 4.176 6 C 0.307 3.693 7 O -0.454 6.454 8 N -0.359 5.359 9 C 0.070 3.930 10 H 0.085 0.915 11 C 0.026 3.974 12 N -0.402 5.402 13 C -0.363 4.363 14 H 0.081 0.919 15 C -0.249 4.249 16 N -0.631 5.631 17 Si 0.775 3.225 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.176 1.176 21 C -0.185 4.185 22 C -0.204 4.204 23 C -0.217 4.217 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.142 0.858 33 H 0.248 0.752 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.198 0.802 37 H 0.067 0.933 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.420 -16.016 -15.456 23.797 hybrid contribution -0.394 -0.161 1.041 1.124 sum -8.814 -16.176 -14.415 23.392 Atomic orbital electron populations 1.21766 0.92481 1.03470 1.02833 1.22682 0.96555 0.82690 1.00828 1.87794 1.21016 1.28285 1.95631 1.22004 0.80716 0.95462 1.01099 1.21460 0.90814 0.98289 1.06995 1.20705 0.90850 0.83006 0.74764 1.90615 1.66018 1.37317 1.51442 1.46002 1.07477 1.08608 1.73846 1.20605 0.80183 0.97488 0.94674 0.91477 1.21031 0.96953 0.94366 0.85008 1.42671 1.60953 1.19714 1.16887 1.19034 1.24586 0.95561 0.97107 0.91924 1.25403 1.02511 0.99535 0.97479 1.69865 1.50799 1.29606 1.12850 0.85529 0.78973 0.79313 0.78652 1.21402 1.21982 1.17567 1.22546 1.04817 0.95662 0.95498 1.22976 0.91993 1.01931 1.03510 1.23199 0.99344 0.99045 1.00091 0.91896 0.89074 0.92400 0.92403 0.93104 0.92383 0.93643 0.87644 0.85831 0.75196 0.94014 0.93649 0.80232 0.93299 0.86233 0.86927 0.89820 0.88499 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.84 6.66 71.98 0.48 1.32 16 3 O -0.41 -9.22 10.34 -148.98 -1.54 -10.76 16 4 C 0.08 1.92 5.23 71.98 0.38 2.30 16 5 C -0.14 -2.98 6.07 29.85 0.18 -2.79 16 6 C 0.52 14.25 7.16 87.66 0.63 14.88 16 7 O -0.57 -18.83 13.01 -3.05 -0.04 -18.87 16 8 N -0.71 -19.32 4.50 -442.54 -1.99 -21.31 16 9 C 0.18 5.23 2.43 44.99 0.11 5.34 16 10 H 0.07 2.31 7.34 -2.38 -0.02 2.29 16 11 C 0.15 5.41 5.80 86.38 0.50 5.91 16 12 N -0.76 -33.98 5.24 -343.44 -1.80 -35.78 16 13 C -0.23 -12.89 10.47 84.04 0.88 -12.01 16 14 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 15 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 16 N -0.98 -62.19 13.97 21.65 0.30 -61.88 16 17 Si 0.95 45.41 27.73 68.60 1.90 47.32 16 18 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 19 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 20 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 21 C -0.17 -4.04 5.36 -10.79 -0.06 -4.10 16 22 C -0.17 -3.79 10.18 30.59 0.31 -3.48 16 23 C -0.18 -4.23 9.73 30.60 0.30 -3.93 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 1.29 8.10 -2.38 -0.02 1.27 16 30 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.41 10.27 8.60 -92.71 -0.80 9.47 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.36 16.08 5.20 -92.71 -0.48 15.60 16 37 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 38 H 0.12 2.61 8.11 -2.39 -0.02 2.59 16 39 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 41 H 0.10 2.74 5.02 -2.39 -0.01 2.73 16 42 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -68.73 344.85 1.42 -67.31 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.33 Total: 34.72 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.91 Total: -0.73 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -3.49 Total: -118.98 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.58 Total: -29.63 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.32 kcal Total: -68.73 1.42 -67.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716606363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.959 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds