Wall clock time and date at job start Mon Mar 30 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46890 * 2 1 4 4 C 1.42901 * 113.99993 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46780 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99995 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99703 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99726 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47007 * 34.99037 * 9 8 6 11 11 C 1.52996 * 109.47012 * 154.99585 * 9 8 6 12 12 N 1.46498 * 109.47059 * 304.99483 * 11 9 8 13 13 C 1.36943 * 119.99752 * 179.72430 * 12 11 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47159 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47290 * 120.00044 * 17 15 13 20 20 H 1.48503 * 109.47163 * 240.00049 * 17 15 13 21 21 C 1.53003 * 109.46609 * 274.99704 * 9 8 6 22 22 C 1.52996 * 117.49852 * 128.74926 * 21 9 8 23 23 C 1.52995 * 117.50233 * 60.08634 * 21 9 8 24 24 H 1.09001 * 109.46879 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47129 * 299.99649 * 1 2 3 26 26 H 1.08993 * 109.47694 * 59.99901 * 1 2 3 27 27 H 1.09004 * 109.46730 * 240.00092 * 2 1 3 28 28 H 1.08991 * 109.47268 * 119.99782 * 2 1 3 29 29 H 1.09000 * 109.46870 * 59.99631 * 4 3 2 30 30 H 1.08996 * 109.46993 * 299.99851 * 4 3 2 31 31 H 1.09000 * 109.47753 * 60.00066 * 5 4 3 32 32 H 1.09006 * 109.47172 * 299.99578 * 5 4 3 33 33 H 0.97000 * 119.99883 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.47066 * 184.99751 * 11 9 8 35 35 H 1.08994 * 109.46974 * 64.99899 * 11 9 8 36 36 H 0.97001 * 120.00384 * 0.02562 * 12 11 9 37 37 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 38 38 H 1.09006 * 115.54473 * 274.41180 * 21 9 8 39 39 H 1.08997 * 117.49676 * 359.97438 * 22 21 9 40 40 H 1.08999 * 117.49788 * 145.01561 * 22 21 9 41 41 H 1.09001 * 117.49820 * 214.97543 * 23 21 9 42 42 H 1.09004 * 117.49643 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9384 0.0001 6 6 5.3276 3.0575 -0.0011 7 8 6.0150 2.0583 -0.0020 8 7 5.9071 4.2743 -0.0003 9 6 7.3676 4.3900 -0.0009 10 1 7.7960 3.5800 -0.5912 11 6 7.7724 5.7341 -0.6095 12 7 7.1754 5.8670 -1.9407 13 6 7.3954 6.9985 -2.6800 14 1 8.0128 7.7910 -2.2834 15 6 6.8251 7.1269 -3.9390 16 7 6.0723 6.1612 -4.4220 17 14 7.1258 8.6701 -4.9476 18 1 8.0004 9.5970 -4.1854 19 1 7.7874 8.3049 -6.2260 20 1 5.8291 9.3350 -5.2337 21 6 7.8866 4.3037 1.4358 22 6 9.0057 3.3009 1.7236 23 6 7.5843 3.0256 2.2205 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8332 0.9767 -0.8908 30 1 3.8340 0.9766 0.8891 31 1 3.4229 3.4215 0.8905 32 1 3.4221 3.4225 -0.8895 33 1 5.3572 5.0734 0.0008 34 1 8.8582 5.7834 -0.6917 35 1 7.4193 6.5434 0.0295 36 1 6.6206 5.1553 -2.2968 37 1 5.6740 6.2508 -5.3019 38 1 7.8980 5.2430 1.9887 39 1 9.3719 2.7024 0.8895 40 1 9.7531 3.5803 2.4662 41 1 7.3972 3.1239 3.2899 42 1 7.0153 2.2463 1.7134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716606364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:38 Heat of formation + Delta-G solvation = -58.408925 kcal Electronic energy + Delta-G solvation = -20923.299148 eV Core-core repulsion = 17711.325278 eV Total energy + Delta-G solvation = -3211.973870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86614 -38.09833 -37.10500 -35.00837 -33.38861 -32.48913 -31.16172 -30.17213 -27.94113 -24.26560 -23.50044 -22.88752 -22.12812 -21.49939 -20.30227 -19.95200 -17.47722 -17.05395 -16.46484 -16.14784 -15.77694 -15.32469 -15.00470 -14.54692 -14.30221 -14.13437 -13.45955 -13.30186 -13.14386 -12.86953 -12.52428 -12.20611 -12.04382 -11.77851 -11.66457 -11.27779 -11.09908 -11.04583 -11.02039 -10.90567 -10.83528 -10.16802 -10.12124 -9.93647 -9.71153 -9.64289 -9.50635 -8.93583 -8.61817 -6.97997 -5.79983 -3.09884 2.90212 3.15776 3.41388 3.47167 3.49413 3.82234 4.21938 4.54339 4.87910 4.89382 4.89755 5.03399 5.10038 5.17223 5.18985 5.26115 5.32313 5.46027 5.48547 5.53500 5.65031 5.72785 5.79168 5.82328 5.85125 5.88904 5.92987 5.96654 6.08554 6.22508 6.36428 6.49260 6.51758 6.67737 6.94706 7.13554 7.67088 7.86800 8.37862 8.53413 9.49835 10.05242 10.40735 11.42443 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.004717 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.446714 B = 5934.684128 C = 7845.131414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.081 3.919 5 C -0.141 4.141 6 C 0.523 3.477 7 O -0.551 6.551 8 N -0.705 5.705 9 C 0.168 3.832 10 H 0.087 0.913 11 C 0.148 3.852 12 N -0.732 5.732 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.162 4.162 22 C -0.171 4.171 23 C -0.186 4.186 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.405 0.595 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -9.422 13.104 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.004 3.996 5 C -0.181 4.181 6 C 0.309 3.691 7 O -0.431 6.431 8 N -0.355 5.355 9 C 0.064 3.936 10 H 0.105 0.895 11 C 0.020 3.980 12 N -0.377 5.377 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.739 3.261 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C -0.182 4.182 22 C -0.209 4.209 23 C -0.222 4.222 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.240 0.760 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.133 -9.789 13.036 17.091 hybrid contribution -0.076 0.893 -0.737 1.161 sum -5.209 -8.895 12.298 16.047 Atomic orbital electron populations 1.21745 0.93860 1.02082 1.03151 1.22424 0.95388 0.83832 1.00155 1.87816 1.21444 1.26471 1.95559 1.22096 0.80317 0.95656 1.01525 1.21470 0.92997 0.97865 1.05792 1.20249 0.89796 0.83563 0.75446 1.90604 1.65224 1.36607 1.50620 1.45934 1.07745 1.08100 1.73678 1.20801 0.79542 1.00217 0.93085 0.89450 1.20915 0.96943 0.92138 0.87999 1.42356 1.60134 1.21337 1.13854 1.19260 1.25388 0.95435 0.97259 0.91072 1.24751 1.00206 0.98145 0.97701 1.69678 1.37126 1.32593 1.18507 0.86115 0.77302 0.82502 0.80227 1.20554 1.21861 1.21847 1.22652 1.03874 0.94464 0.97221 1.22893 0.91660 1.02963 1.03387 1.23264 0.99330 1.00377 0.99277 0.91244 0.91937 0.91759 0.93318 0.93504 0.92346 0.92697 0.88360 0.87645 0.75958 0.94719 0.95742 0.78012 0.93513 0.87915 0.88764 0.89243 0.89945 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.60 6.66 37.16 0.25 0.84 16 3 O -0.39 -5.10 10.34 -35.23 -0.36 -5.47 16 4 C 0.08 1.06 5.23 37.16 0.19 1.25 16 5 C -0.14 -1.84 6.07 -27.88 -0.17 -2.01 16 6 C 0.52 8.21 7.16 -10.98 -0.08 8.13 16 7 O -0.55 -9.98 13.01 5.56 0.07 -9.90 16 8 N -0.70 -11.08 4.50 -53.80 -0.24 -11.32 16 9 C 0.17 2.82 2.43 -67.93 -0.17 2.66 16 10 H 0.09 1.68 7.34 -51.93 -0.38 1.29 16 11 C 0.15 2.87 5.80 -4.04 -0.02 2.85 16 12 N -0.73 -17.99 5.43 -59.91 -0.33 -18.32 16 13 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 17 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 C -0.16 -2.30 5.36 -90.62 -0.49 -2.79 16 22 C -0.17 -2.27 10.18 -26.70 -0.27 -2.54 16 23 C -0.19 -2.54 9.74 -26.70 -0.26 -2.80 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.41 6.07 8.60 -40.82 -0.35 5.71 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.39 10.11 7.33 -40.82 -0.30 9.81 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 39 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.12 1.84 5.02 -51.93 -0.26 1.58 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -31.17 347.96 -7.96 -39.13 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -7.17 Total: 13.12 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.88 Total: -2.50 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.16 Total: -56.75 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.29 Total: -15.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.17 -7.96 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716606364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.275 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds