Wall clock time and date at job start Mon Mar 30 2020 01:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47247 * 2 1 4 4 C 1.42895 * 113.99947 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47094 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47281 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47155 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99902 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00207 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00008 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46948 * 174.94227 * 10 9 7 12 12 N 1.46505 * 115.55024 * 80.38544 * 11 10 9 13 13 C 1.36942 * 119.99583 * 65.27855 * 12 11 10 14 14 H 1.08007 * 119.99964 * 354.96284 * 13 12 11 15 15 C 1.38809 * 119.99798 * 174.68484 * 13 12 11 16 16 N 1.31619 * 120.00146 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47255 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47189 * 120.00123 * 17 15 13 20 20 H 1.48504 * 109.47055 * 240.00189 * 17 15 13 21 21 C 1.52999 * 117.50098 * 226.06177 * 11 10 9 22 22 C 1.53002 * 117.49982 * 294.71995 * 11 10 9 23 23 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46947 * 299.99552 * 1 2 3 25 25 H 1.09002 * 109.47263 * 59.99684 * 1 2 3 26 26 H 1.09007 * 109.46847 * 240.00264 * 2 1 3 27 27 H 1.08993 * 109.47048 * 120.00278 * 2 1 3 28 28 H 1.08993 * 109.47080 * 60.00217 * 4 3 2 29 29 H 1.09001 * 109.47077 * 299.99705 * 4 3 2 30 30 H 1.09001 * 109.47333 * 59.99260 * 5 4 3 31 31 H 1.08998 * 109.47006 * 300.00057 * 5 4 3 32 32 H 1.09002 * 109.47024 * 59.99870 * 6 5 4 33 33 H 1.09002 * 109.46875 * 299.99793 * 6 5 4 34 34 H 0.97001 * 119.99786 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47255 * 54.94194 * 10 9 7 36 36 H 1.08999 * 109.46673 * 294.93754 * 10 9 7 37 37 H 0.96998 * 120.00497 * 245.27841 * 12 11 10 38 38 H 0.97000 * 119.99696 * 180.02562 * 16 15 13 39 39 H 1.08998 * 117.49974 * 215.00780 * 21 11 10 40 40 H 1.09000 * 117.49520 * 0.02562 * 21 11 10 41 41 H 1.09000 * 117.49687 * 359.97438 * 22 11 10 42 42 H 1.08995 * 117.49858 * 144.97063 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3507 3.0592 0.0001 7 6 5.7392 4.5152 0.0002 8 8 4.8807 5.3719 -0.0003 9 7 7.0407 4.8653 -0.0003 10 6 7.4184 6.2808 0.0003 11 6 8.9383 6.4030 0.1267 12 7 9.6934 6.2046 -1.1129 13 6 9.5551 7.0904 -2.1481 14 1 8.8301 7.8883 -2.0828 15 6 10.3507 6.9663 -3.2787 16 7 11.2377 5.9969 -3.3561 17 14 10.1626 8.1750 -4.6904 18 1 9.1042 9.1626 -4.3589 19 1 11.4492 8.8829 -4.9109 20 1 9.7841 7.4402 -5.9242 21 6 9.4842 7.4195 1.1315 22 6 9.5798 5.9211 1.4295 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8332 0.9767 -0.8908 29 1 3.8340 0.9764 0.8892 30 1 3.4230 3.4214 0.8905 31 1 3.4223 3.4224 -0.8894 32 1 5.7534 2.5760 -0.8901 33 1 5.7534 2.5752 0.8899 34 1 7.7273 4.1801 -0.0003 35 1 6.9422 6.7836 0.8420 36 1 7.0929 6.7440 -0.9311 37 1 10.2914 5.4459 -1.2005 38 1 11.7940 5.9105 -4.1461 39 1 10.4051 7.9408 0.8702 40 1 8.7605 8.0009 1.7028 41 1 8.9191 5.5175 2.1966 42 1 10.5635 5.4562 1.3642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716675943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:11 Heat of formation + Delta-G solvation = -64.360756 kcal Electronic energy + Delta-G solvation = -20243.754934 eV Core-core repulsion = 17031.522973 eV Total energy + Delta-G solvation = -3212.231961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.52339 -38.27684 -37.49693 -33.92814 -33.70940 -33.01965 -31.26173 -29.72421 -27.79994 -25.53260 -23.91443 -23.05093 -22.08588 -21.64771 -19.96103 -19.08175 -17.26142 -17.06153 -16.65104 -16.42866 -15.78645 -15.42772 -15.03877 -14.55516 -14.25952 -14.06517 -13.73870 -13.12202 -13.08749 -12.97956 -12.89351 -12.08947 -12.04734 -11.83629 -11.75285 -11.64306 -11.11334 -11.02150 -10.97066 -10.91603 -10.89882 -10.32674 -10.22773 -9.80994 -9.74219 -9.66763 -9.31382 -8.87718 -8.59988 -7.08971 -5.85853 -3.16382 2.93861 3.23608 3.39775 3.46747 3.48568 3.68710 4.41867 4.58539 4.73874 4.79340 4.85519 4.87145 5.03846 5.10063 5.20220 5.23204 5.26966 5.28829 5.39906 5.42199 5.47259 5.59129 5.60838 5.63361 5.80559 5.81563 6.03698 6.08231 6.20519 6.24195 6.42266 6.55835 6.65517 6.76799 6.86674 7.00711 7.68264 7.88873 8.32450 8.55563 9.43836 9.96959 10.32247 11.36138 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.003185 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.787756 B = 8788.498783 C = 9543.299560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.063 3.937 5 C -0.102 4.102 6 C -0.138 4.138 7 C 0.509 3.491 8 O -0.550 6.550 9 N -0.712 5.712 10 C 0.147 3.853 11 C 0.128 3.872 12 N -0.689 5.689 13 C -0.237 4.237 14 H 0.073 0.927 15 C -0.010 4.010 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.187 4.187 22 C -0.185 4.185 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.917 -11.896 9.723 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.140 4.140 6 C -0.178 4.178 7 C 0.295 3.705 8 O -0.429 6.429 9 N -0.362 5.362 10 C 0.021 3.979 11 C 0.034 3.966 12 N -0.329 5.329 13 C -0.368 4.368 14 H 0.091 0.909 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.228 4.228 22 C -0.223 4.223 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.222 0.778 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.660 -10.972 9.558 19.958 hybrid contribution 0.882 -0.193 -0.895 1.272 sum -12.778 -11.164 8.663 19.052 Atomic orbital electron populations 1.21746 0.93821 1.02123 1.03236 1.22449 0.95603 0.83976 0.99976 1.87900 1.21331 1.26222 1.95417 1.22524 0.81109 0.97654 1.00095 1.21199 0.93599 0.94291 1.04924 1.21534 0.97241 0.94528 1.04507 1.20490 0.82652 0.91018 0.76384 1.90690 1.49577 1.52328 1.50256 1.45936 1.06863 1.09347 1.74071 1.21239 0.93883 0.80860 1.01876 1.20179 0.89625 1.02384 0.84462 1.41794 1.50363 1.30731 1.10018 1.19220 1.15937 1.07171 0.94432 0.90905 1.24763 0.98305 0.98828 0.98759 1.69668 1.25500 1.33285 1.29518 0.86108 0.77284 0.80444 0.82327 1.20373 1.21797 1.21816 1.23369 1.03553 0.91615 1.04249 1.23073 1.02145 0.98197 0.98896 0.91200 0.91841 0.91794 0.93449 0.93515 0.93221 0.93359 0.90417 0.90271 0.88696 0.88976 0.76523 0.92175 0.90712 0.77764 0.93468 0.88599 0.89935 0.89507 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.45 10.34 -35.23 -0.36 -4.81 16 4 C 0.06 0.61 5.94 37.16 0.22 0.84 16 5 C -0.10 -1.19 4.87 -26.73 -0.13 -1.32 16 6 C -0.14 -1.51 5.70 -27.88 -0.16 -1.67 16 7 C 0.51 7.92 7.83 -10.99 -0.09 7.84 16 8 O -0.55 -10.72 15.98 5.55 0.09 -10.63 16 9 N -0.71 -11.13 5.51 -60.30 -0.33 -11.46 16 10 C 0.15 2.68 5.73 -4.04 -0.02 2.65 16 11 C 0.13 2.41 2.15 -131.81 -0.28 2.13 16 12 N -0.69 -16.32 5.49 -47.22 -0.26 -16.58 16 13 C -0.24 -6.35 9.56 -15.06 -0.14 -6.50 16 14 H 0.07 1.95 7.77 -52.48 -0.41 1.54 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 17 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 C -0.19 -3.24 10.11 -26.70 -0.27 -3.51 16 22 C -0.19 -2.90 10.14 -26.69 -0.27 -3.17 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 5.56 8.48 -40.82 -0.35 5.22 16 35 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 36 H 0.07 1.59 7.73 -51.93 -0.40 1.19 16 37 H 0.39 9.71 8.04 -40.82 -0.33 9.38 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -31.76 355.97 -7.78 -39.54 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -7.36 Total: 11.02 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.61 Total: -3.09 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.13 Total: -54.57 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.28 Total: -15.45 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.76 -7.78 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716675943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.824 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds