Wall clock time and date at job start Mon Mar 30 2020 01:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47247 * 2 1 4 4 C 1.42895 * 113.99947 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47094 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47281 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47155 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99902 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00207 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00008 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46948 * 174.94227 * 10 9 7 12 12 N 1.46505 * 115.55024 * 80.38544 * 11 10 9 13 13 C 1.36942 * 119.99583 * 65.27855 * 12 11 10 14 14 H 1.08007 * 119.99964 * 354.96284 * 13 12 11 15 15 C 1.38809 * 119.99798 * 174.68484 * 13 12 11 16 16 N 1.31619 * 120.00146 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47255 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47189 * 120.00123 * 17 15 13 20 20 H 1.48504 * 109.47055 * 240.00189 * 17 15 13 21 21 C 1.52999 * 117.50098 * 226.06177 * 11 10 9 22 22 C 1.53002 * 117.49982 * 294.71995 * 11 10 9 23 23 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46947 * 299.99552 * 1 2 3 25 25 H 1.09002 * 109.47263 * 59.99684 * 1 2 3 26 26 H 1.09007 * 109.46847 * 240.00264 * 2 1 3 27 27 H 1.08993 * 109.47048 * 120.00278 * 2 1 3 28 28 H 1.08993 * 109.47080 * 60.00217 * 4 3 2 29 29 H 1.09001 * 109.47077 * 299.99705 * 4 3 2 30 30 H 1.09001 * 109.47333 * 59.99260 * 5 4 3 31 31 H 1.08998 * 109.47006 * 300.00057 * 5 4 3 32 32 H 1.09002 * 109.47024 * 59.99870 * 6 5 4 33 33 H 1.09002 * 109.46875 * 299.99793 * 6 5 4 34 34 H 0.97001 * 119.99786 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47255 * 54.94194 * 10 9 7 36 36 H 1.08999 * 109.46673 * 294.93754 * 10 9 7 37 37 H 0.96998 * 120.00497 * 245.27841 * 12 11 10 38 38 H 0.97000 * 119.99696 * 180.02562 * 16 15 13 39 39 H 1.08998 * 117.49974 * 215.00780 * 21 11 10 40 40 H 1.09000 * 117.49520 * 0.02562 * 21 11 10 41 41 H 1.09000 * 117.49687 * 359.97438 * 22 11 10 42 42 H 1.08995 * 117.49858 * 144.97063 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3507 3.0592 0.0001 7 6 5.7392 4.5152 0.0002 8 8 4.8807 5.3719 -0.0003 9 7 7.0407 4.8653 -0.0003 10 6 7.4184 6.2808 0.0003 11 6 8.9383 6.4030 0.1267 12 7 9.6934 6.2046 -1.1129 13 6 9.5551 7.0904 -2.1481 14 1 8.8301 7.8883 -2.0828 15 6 10.3507 6.9663 -3.2787 16 7 11.2377 5.9969 -3.3561 17 14 10.1626 8.1750 -4.6904 18 1 9.1042 9.1626 -4.3589 19 1 11.4492 8.8829 -4.9109 20 1 9.7841 7.4402 -5.9242 21 6 9.4842 7.4195 1.1315 22 6 9.5798 5.9211 1.4295 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8332 0.9767 -0.8908 29 1 3.8340 0.9764 0.8892 30 1 3.4230 3.4214 0.8905 31 1 3.4223 3.4224 -0.8894 32 1 5.7534 2.5760 -0.8901 33 1 5.7534 2.5752 0.8899 34 1 7.7273 4.1801 -0.0003 35 1 6.9422 6.7836 0.8420 36 1 7.0929 6.7440 -0.9311 37 1 10.2914 5.4459 -1.2005 38 1 11.7940 5.9105 -4.1461 39 1 10.4051 7.9408 0.8702 40 1 8.7605 8.0009 1.7028 41 1 8.9191 5.5175 2.1966 42 1 10.5635 5.4562 1.3642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716675943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:10 Heat of formation + Delta-G solvation = -86.723838 kcal Electronic energy + Delta-G solvation = -20244.724670 eV Core-core repulsion = 17031.522973 eV Total energy + Delta-G solvation = -3213.201697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80972 -39.16406 -38.85571 -35.30261 -34.81546 -34.76044 -31.93219 -31.65511 -28.94652 -26.67861 -25.92503 -23.65997 -23.33657 -22.68496 -21.22038 -20.56322 -19.15229 -18.25820 -17.45417 -17.36879 -17.21705 -16.56999 -16.40467 -15.94603 -15.54715 -15.21793 -15.09414 -14.90867 -14.31176 -13.97480 -13.64252 -13.47433 -13.35164 -12.96868 -12.86257 -12.73245 -12.48368 -12.40112 -12.28676 -12.18588 -11.99959 -11.86663 -11.74917 -11.59942 -11.06662 -10.97442 -10.55706 -10.51348 -9.98370 -9.03793 -7.97695 -5.26132 1.44439 1.46168 1.55064 1.71056 2.17808 2.51642 2.80805 3.12505 3.36701 3.66486 3.78693 3.85814 4.01110 4.12654 4.19012 4.20384 4.30431 4.34527 4.45913 4.50935 4.54285 4.55784 4.70043 4.81230 4.83045 4.90383 4.94591 5.03285 5.04400 5.15055 5.18977 5.24335 5.30167 5.38948 5.53928 5.54503 6.25984 6.32804 6.66455 7.31953 7.33280 8.05311 8.29161 9.24812 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.003185 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.787756 B = 8788.498783 C = 9543.299560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.420 6.420 4 C 0.065 3.935 5 C -0.099 4.099 6 C -0.126 4.126 7 C 0.503 3.497 8 O -0.595 6.595 9 N -0.706 5.706 10 C 0.159 3.841 11 C 0.101 3.899 12 N -0.698 5.698 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.069 4.069 16 N -0.964 5.964 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.292 1.292 20 H -0.294 1.294 21 C -0.188 4.188 22 C -0.150 4.150 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.378 0.622 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 -13.345 11.134 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.340 6.340 4 C -0.011 4.011 5 C -0.137 4.137 6 C -0.165 4.165 7 C 0.292 3.708 8 O -0.477 6.477 9 N -0.357 5.357 10 C 0.032 3.968 11 C 0.008 3.992 12 N -0.337 5.337 13 C -0.360 4.360 14 H 0.085 0.915 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.219 1.219 20 H -0.222 1.222 21 C -0.228 4.228 22 C -0.187 4.187 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.212 0.788 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.993 -12.429 11.009 21.714 hybrid contribution 0.913 0.264 -1.251 1.571 sum -13.080 -12.166 9.758 20.355 Atomic orbital electron populations 1.21785 0.93323 1.03351 1.02477 1.22665 0.96143 0.82795 1.01086 1.87865 1.22227 1.28257 1.95666 1.22526 0.80738 0.96087 1.01752 1.21124 0.94088 0.95666 1.02812 1.21536 0.96681 0.91167 1.07121 1.21344 0.81890 0.92724 0.74876 1.90673 1.50690 1.54102 1.52199 1.45890 1.07439 1.08533 1.73821 1.20921 0.93285 0.82349 1.00203 1.20350 0.89465 1.05445 0.83918 1.41819 1.50753 1.29909 1.11216 1.19429 1.14627 1.06827 0.95155 0.91454 1.25420 0.98906 1.00686 1.01112 1.69783 1.26716 1.34966 1.29953 0.85222 0.77092 0.78725 0.79648 1.19688 1.21910 1.22150 1.23381 1.03076 0.92852 1.03524 1.23144 1.02235 0.96644 0.96689 0.88983 0.92435 0.92719 0.92527 0.92101 0.91948 0.91135 0.92029 0.93023 0.86793 0.85298 0.75246 0.91198 0.94664 0.78816 0.93999 0.90434 0.87698 0.86269 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.42 -9.12 10.34 -148.98 -1.54 -10.67 16 4 C 0.07 1.14 5.94 71.98 0.43 1.56 16 5 C -0.10 -2.21 4.87 30.59 0.15 -2.06 16 6 C -0.13 -2.44 5.70 29.85 0.17 -2.27 16 7 C 0.50 15.13 7.83 87.66 0.69 15.81 16 8 O -0.60 -23.38 15.98 -3.04 -0.05 -23.42 16 9 N -0.71 -21.04 5.51 -463.06 -2.55 -23.60 16 10 C 0.16 5.68 5.73 86.38 0.49 6.17 16 11 C 0.10 3.68 2.15 3.60 0.01 3.69 16 12 N -0.70 -33.04 5.49 -303.32 -1.67 -34.70 16 13 C -0.23 -12.37 9.56 84.03 0.80 -11.57 16 14 H 0.07 3.65 7.77 -2.91 -0.02 3.63 16 15 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 16 N -0.96 -57.09 13.06 21.65 0.28 -56.81 16 17 Si 0.96 46.21 29.55 68.60 2.03 48.24 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 C -0.19 -6.16 10.11 30.62 0.31 -5.85 16 22 C -0.15 -4.24 10.14 30.62 0.31 -3.93 16 23 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 31 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 32 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 10.49 8.48 -92.71 -0.79 9.70 16 35 H 0.07 2.36 7.94 -2.39 -0.02 2.34 16 36 H 0.03 1.53 7.73 -2.39 -0.02 1.51 16 37 H 0.38 19.01 8.04 -92.71 -0.75 18.27 16 38 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.10 2.96 8.08 -2.39 -0.02 2.94 16 41 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -70.28 355.97 1.01 -69.27 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.53 Total: 33.55 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.05 Total: -1.87 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.94 Total: -115.10 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -1.59 Total: -34.09 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -70.28 1.01 -69.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716675943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.456 kcal (2) G-P(sol) polarization free energy of solvation -70.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds