Wall clock time and date at job start Mon Mar 30 2020 01:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47405 * 2 1 4 4 C 1.42898 * 114.00205 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47467 * 329.99994 * 4 3 2 6 6 C 1.53007 * 109.46882 * 90.00018 * 4 3 2 7 7 C 1.50698 * 109.47198 * 209.99678 * 4 3 2 8 8 O 1.21282 * 119.99793 * 0.02562 * 7 4 3 9 9 N 1.34780 * 120.00064 * 180.02562 * 7 4 3 10 10 C 1.46506 * 119.99908 * 180.02562 * 9 7 4 11 11 C 1.52995 * 109.46821 * 176.10954 * 10 9 7 12 12 N 1.46500 * 112.84998 * 294.03214 * 11 10 9 13 13 C 1.36929 * 120.00368 * 294.87709 * 12 11 10 14 14 H 1.08006 * 120.00241 * 354.08067 * 13 12 11 15 15 C 1.38813 * 120.00516 * 174.07745 * 13 12 11 16 16 N 1.31620 * 120.00333 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99645 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46856 * 89.99941 * 17 15 13 19 19 H 1.48498 * 109.47007 * 209.99795 * 17 15 13 20 20 H 1.48498 * 109.47375 * 330.00008 * 17 15 13 21 21 C 1.53780 * 113.61290 * 162.72804 * 11 10 9 22 22 C 1.53783 * 87.08054 * 220.01788 * 21 11 10 23 23 C 1.53777 * 87.08004 * 25.43421 * 22 21 11 24 24 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47643 * 300.00441 * 1 2 3 26 26 H 1.09003 * 109.47135 * 60.00578 * 1 2 3 27 27 H 1.08995 * 109.47643 * 239.99559 * 2 1 3 28 28 H 1.09003 * 109.47135 * 119.99422 * 2 1 3 29 29 H 1.08998 * 109.47089 * 59.99744 * 6 4 3 30 30 H 1.09003 * 109.47200 * 179.97438 * 6 4 3 31 31 H 1.09001 * 109.46971 * 299.99583 * 6 4 3 32 32 H 0.96997 * 119.99961 * 0.02562 * 9 7 4 33 33 H 1.08994 * 109.47065 * 296.10910 * 10 9 7 34 34 H 1.08999 * 109.47154 * 56.11166 * 10 9 7 35 35 H 0.97002 * 119.99993 * 114.87887 * 12 11 10 36 36 H 0.97000 * 120.00328 * 179.97438 * 16 15 13 37 37 H 1.08999 * 113.61752 * 334.56605 * 21 11 10 38 38 H 1.09004 * 113.61519 * 105.46881 * 21 11 10 39 39 H 1.08996 * 113.61648 * 270.88087 * 22 21 11 40 40 H 1.09004 * 113.61431 * 139.98460 * 22 21 11 41 41 H 1.09008 * 113.61104 * 220.01576 * 23 22 21 42 42 H 1.08996 * 113.62117 * 89.11784 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9398 1.5001 -1.4418 7 6 3.8342 2.7265 0.7109 8 8 2.9853 3.4599 1.1717 9 7 5.1382 3.0440 0.8341 10 6 5.5303 4.2749 1.5251 11 6 7.0562 4.3479 1.6103 12 7 7.6295 3.2987 2.4569 13 6 7.3611 3.2792 3.7995 14 1 6.8068 4.0887 4.2512 15 6 7.8013 2.2191 4.5801 16 7 7.5429 2.2002 5.8705 17 14 8.7606 0.8194 3.7990 18 1 10.2122 1.1297 3.8418 19 1 8.5007 -0.4368 4.5471 20 1 8.3315 0.6525 2.3872 21 6 7.5888 5.7557 1.9252 22 6 8.7083 5.4738 0.9091 23 6 7.7440 4.4794 0.2413 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.5075 2.3585 -1.9559 30 1 5.0264 1.5866 -1.4414 31 1 3.6481 0.5841 -1.9556 32 1 5.8171 2.4575 0.4652 33 1 5.1556 5.1367 0.9729 34 1 5.1098 4.2768 2.5307 35 1 8.1993 2.6177 2.0663 36 1 7.8502 1.4593 6.4159 37 1 6.9143 6.5560 1.6208 38 1 7.9464 5.8685 2.9487 39 1 9.5875 5.0020 1.3478 40 1 8.9550 6.3308 0.2823 41 1 8.2269 3.5616 -0.0947 42 1 7.1119 4.9305 -0.5235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724782651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:31 Heat of formation + Delta-G solvation = -53.550416 kcal Electronic energy + Delta-G solvation = -21631.588256 eV Core-core repulsion = 18419.825067 eV Total energy + Delta-G solvation = -3211.763189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83633 -38.84715 -37.46547 -34.00115 -33.32302 -32.40402 -30.63650 -30.16886 -27.40193 -25.38216 -24.45820 -23.45646 -22.72591 -21.62180 -20.01446 -18.35700 -17.69156 -17.18012 -16.96052 -15.86246 -15.35670 -15.03194 -14.86447 -14.31465 -14.26224 -13.93225 -13.39700 -13.19918 -12.97008 -12.74591 -12.68133 -12.32331 -12.19464 -12.03884 -11.88469 -11.49137 -11.41647 -11.22129 -11.09332 -10.96390 -10.49033 -10.29405 -10.17712 -9.87530 -9.71911 -9.53913 -9.25185 -8.91628 -8.54187 -7.36846 -5.82407 -3.20265 2.98042 3.10265 3.28061 3.31225 3.38745 4.01354 4.51410 4.76783 4.87015 4.95934 4.98051 5.03120 5.06807 5.14789 5.18750 5.24604 5.29745 5.36911 5.41102 5.59120 5.63156 5.66225 5.79318 5.94848 5.96422 6.01195 6.02433 6.09480 6.18914 6.22316 6.51824 6.63830 6.80287 6.84939 6.95552 7.10041 7.91658 7.94663 8.36124 8.61978 9.12961 9.84362 10.02566 11.35526 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.005744 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.987859 B = 4873.481360 C = 5824.439886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.069 3.931 5 H 0.086 0.914 6 C -0.168 4.168 7 C 0.511 3.489 8 O -0.529 6.529 9 N -0.706 5.706 10 C 0.122 3.878 11 C 0.178 3.822 12 N -0.724 5.724 13 C -0.241 4.241 14 H 0.092 0.908 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.882 3.118 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.147 4.147 22 C -0.130 4.130 23 C -0.147 4.147 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.363 0.637 36 H 0.260 0.740 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -2.295 -16.375 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.008 3.992 5 H 0.104 0.896 6 C -0.226 4.226 7 C 0.295 3.705 8 O -0.404 6.404 9 N -0.357 5.357 10 C -0.004 4.004 11 C 0.086 3.914 12 N -0.366 5.366 13 C -0.371 4.371 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.576 5.576 17 Si 0.712 3.288 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.187 4.187 22 C -0.167 4.167 23 C -0.185 4.185 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.230 0.770 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.196 0.804 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.521 -1.571 -15.771 16.783 hybrid contribution 1.277 -1.719 -0.476 2.194 sum -4.244 -3.291 -16.248 17.112 Atomic orbital electron populations 1.21716 0.93568 1.02039 1.03365 1.22575 0.95859 0.83833 1.00045 1.88039 1.18604 1.26035 1.94926 1.21904 0.83496 0.97304 0.96522 0.89633 1.22223 1.01646 1.03381 0.95339 1.20217 0.82986 0.86985 0.80286 1.90693 1.50269 1.51532 1.47952 1.45683 1.06228 1.25745 1.58081 1.21841 0.96506 0.84595 0.97441 1.20756 0.89589 0.90546 0.90522 1.42389 1.58197 1.30319 1.05732 1.18943 1.30695 1.05593 0.81820 0.89015 1.24667 1.00769 0.97872 0.95420 1.69694 1.50637 1.32905 1.04410 0.86612 0.80393 0.83334 0.78466 1.21135 1.21833 1.20402 1.23274 0.97702 0.97159 1.00591 1.22654 0.97518 0.98466 0.98109 1.23204 0.98948 0.99733 0.96599 0.91174 0.91568 0.91904 0.93429 0.93147 0.91178 0.90960 0.91550 0.77021 0.92557 0.90624 0.80399 0.93006 0.90955 0.90240 0.90181 0.92457 0.91934 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.15 0.38 -1.08 16 2 C 0.05 0.60 6.47 37.15 0.24 0.84 16 3 O -0.36 -5.44 9.52 -55.14 -0.52 -5.97 16 4 C 0.07 0.97 3.14 -27.88 -0.09 0.88 16 5 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 6 C -0.17 -1.75 9.42 37.16 0.35 -1.40 16 7 C 0.51 9.09 7.23 -10.98 -0.08 9.01 16 8 O -0.53 -11.71 16.50 -14.36 -0.24 -11.95 16 9 N -0.71 -11.65 5.34 -60.29 -0.32 -11.97 16 10 C 0.12 2.20 5.03 -4.04 -0.02 2.18 16 11 C 0.18 3.11 0.80 -131.01 -0.10 3.01 16 12 N -0.72 -15.51 4.98 -46.48 -0.23 -15.74 16 13 C -0.24 -6.39 9.56 -15.06 -0.14 -6.54 16 14 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 15 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 16 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 17 Si 0.88 21.05 27.68 -169.99 -4.71 16.35 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.07 6.61 56.52 0.37 -5.69 16 21 C -0.15 -2.42 7.28 -25.92 -0.19 -2.61 16 22 C -0.13 -1.86 7.99 -25.92 -0.21 -2.06 16 23 C -0.15 -2.03 7.08 -25.92 -0.18 -2.21 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.44 7.87 -51.93 -0.41 0.03 16 28 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.65 7.56 -51.93 -0.39 0.25 16 31 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 32 H 0.40 5.72 7.72 -40.82 -0.32 5.40 16 33 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.08 1.66 7.85 -51.93 -0.41 1.25 16 35 H 0.36 7.59 5.79 -40.82 -0.24 7.36 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.07 1.05 8.04 -51.93 -0.42 0.64 16 38 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.82 8.09 -51.92 -0.42 0.40 16 42 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -33.12 344.51 -7.39 -40.52 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -7.20 Total: 11.18 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.14 Total: 0.18 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.22 Total: -55.50 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.76 Total: -17.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.12 -7.39 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724782651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.034 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds