Wall clock time and date at job start Mon Mar 30 2020 01:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47405 * 2 1 4 4 C 1.42898 * 114.00205 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47467 * 329.99994 * 4 3 2 6 6 C 1.53007 * 109.46882 * 90.00018 * 4 3 2 7 7 C 1.50698 * 109.47198 * 209.99678 * 4 3 2 8 8 O 1.21282 * 119.99793 * 0.02562 * 7 4 3 9 9 N 1.34780 * 120.00064 * 180.02562 * 7 4 3 10 10 C 1.46506 * 119.99908 * 180.02562 * 9 7 4 11 11 C 1.52995 * 109.46821 * 176.10954 * 10 9 7 12 12 N 1.46500 * 112.84998 * 294.03214 * 11 10 9 13 13 C 1.36929 * 120.00368 * 294.87709 * 12 11 10 14 14 H 1.08006 * 120.00241 * 354.08067 * 13 12 11 15 15 C 1.38813 * 120.00516 * 174.07745 * 13 12 11 16 16 N 1.31620 * 120.00333 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99645 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46856 * 89.99941 * 17 15 13 19 19 H 1.48498 * 109.47007 * 209.99795 * 17 15 13 20 20 H 1.48498 * 109.47375 * 330.00008 * 17 15 13 21 21 C 1.53780 * 113.61290 * 162.72804 * 11 10 9 22 22 C 1.53783 * 87.08054 * 220.01788 * 21 11 10 23 23 C 1.53777 * 87.08004 * 25.43421 * 22 21 11 24 24 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47643 * 300.00441 * 1 2 3 26 26 H 1.09003 * 109.47135 * 60.00578 * 1 2 3 27 27 H 1.08995 * 109.47643 * 239.99559 * 2 1 3 28 28 H 1.09003 * 109.47135 * 119.99422 * 2 1 3 29 29 H 1.08998 * 109.47089 * 59.99744 * 6 4 3 30 30 H 1.09003 * 109.47200 * 179.97438 * 6 4 3 31 31 H 1.09001 * 109.46971 * 299.99583 * 6 4 3 32 32 H 0.96997 * 119.99961 * 0.02562 * 9 7 4 33 33 H 1.08994 * 109.47065 * 296.10910 * 10 9 7 34 34 H 1.08999 * 109.47154 * 56.11166 * 10 9 7 35 35 H 0.97002 * 119.99993 * 114.87887 * 12 11 10 36 36 H 0.97000 * 120.00328 * 179.97438 * 16 15 13 37 37 H 1.08999 * 113.61752 * 334.56605 * 21 11 10 38 38 H 1.09004 * 113.61519 * 105.46881 * 21 11 10 39 39 H 1.08996 * 113.61648 * 270.88087 * 22 21 11 40 40 H 1.09004 * 113.61431 * 139.98460 * 22 21 11 41 41 H 1.09008 * 113.61104 * 220.01576 * 23 22 21 42 42 H 1.08996 * 113.62117 * 89.11784 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9398 1.5001 -1.4418 7 6 3.8342 2.7265 0.7109 8 8 2.9853 3.4599 1.1717 9 7 5.1382 3.0440 0.8341 10 6 5.5303 4.2749 1.5251 11 6 7.0562 4.3479 1.6103 12 7 7.6295 3.2987 2.4569 13 6 7.3611 3.2792 3.7995 14 1 6.8068 4.0887 4.2512 15 6 7.8013 2.2191 4.5801 16 7 7.5429 2.2002 5.8705 17 14 8.7606 0.8194 3.7990 18 1 10.2122 1.1297 3.8418 19 1 8.5007 -0.4368 4.5471 20 1 8.3315 0.6525 2.3872 21 6 7.5888 5.7557 1.9252 22 6 8.7083 5.4738 0.9091 23 6 7.7440 4.4794 0.2413 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.5075 2.3585 -1.9559 30 1 5.0264 1.5866 -1.4414 31 1 3.6481 0.5841 -1.9556 32 1 5.8171 2.4575 0.4652 33 1 5.1556 5.1367 0.9729 34 1 5.1098 4.2768 2.5307 35 1 8.1993 2.6177 2.0663 36 1 7.8502 1.4593 6.4159 37 1 6.9143 6.5560 1.6208 38 1 7.9464 5.8685 2.9487 39 1 9.5875 5.0020 1.3478 40 1 8.9550 6.3308 0.2823 41 1 8.2269 3.5616 -0.0947 42 1 7.1119 4.9305 -0.5235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724782651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:31 Heat of formation + Delta-G solvation = -77.585019 kcal Electronic energy + Delta-G solvation = -21632.630475 eV Core-core repulsion = 18419.825067 eV Total energy + Delta-G solvation = -3212.805408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19194 -40.15521 -38.64380 -35.44931 -35.25350 -33.36084 -32.55220 -31.13731 -28.78730 -26.69707 -25.81403 -25.02014 -23.63864 -22.95613 -21.38327 -19.94175 -19.56405 -18.45016 -18.06740 -17.04279 -16.61227 -16.38379 -16.30336 -15.99957 -15.64244 -15.19470 -14.73181 -14.56569 -14.38312 -14.19136 -13.79389 -13.38581 -13.19622 -13.18522 -13.09796 -12.97574 -12.86782 -12.54252 -12.29976 -12.19968 -12.03499 -11.79463 -11.62595 -11.56009 -11.05674 -10.93462 -10.82936 -10.44219 -10.02231 -9.30128 -7.99362 -5.34724 1.36834 1.42897 1.50042 1.60553 1.92605 2.50360 2.94707 3.29971 3.44598 3.66513 3.76405 3.90752 3.97464 4.01635 4.06367 4.18207 4.18806 4.32263 4.46352 4.60299 4.63093 4.73295 4.80077 4.87678 4.88786 4.92759 5.00435 5.00873 5.14195 5.19656 5.25076 5.30316 5.39337 5.49897 5.65363 5.84919 6.12224 6.24037 6.61581 7.10796 7.27098 7.83829 8.04420 9.22566 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.005744 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.987859 B = 4873.481360 C = 5824.439886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.391 6.391 4 C 0.071 3.929 5 H 0.101 0.899 6 C -0.159 4.159 7 C 0.502 3.498 8 O -0.584 6.584 9 N -0.695 5.695 10 C 0.130 3.870 11 C 0.160 3.840 12 N -0.721 5.721 13 C -0.216 4.216 14 H 0.046 0.954 15 C -0.067 4.067 16 N -0.989 5.989 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.305 1.305 20 H -0.237 1.237 21 C -0.154 4.154 22 C -0.120 4.120 23 C -0.123 4.123 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.022 0.978 35 H 0.370 0.630 36 H 0.255 0.745 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -3.752 -20.578 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.311 6.311 4 C 0.010 3.990 5 H 0.119 0.881 6 C -0.217 4.217 7 C 0.288 3.712 8 O -0.464 6.464 9 N -0.347 5.347 10 C 0.004 3.996 11 C 0.069 3.931 12 N -0.364 5.364 13 C -0.347 4.347 14 H 0.064 0.936 15 C -0.258 4.258 16 N -0.640 5.640 17 Si 0.782 3.218 18 H -0.206 1.206 19 H -0.232 1.232 20 H -0.161 1.161 21 C -0.194 4.194 22 C -0.158 4.158 23 C -0.161 4.161 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.205 0.795 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.236 -3.019 -20.062 20.726 hybrid contribution 0.787 -1.131 0.885 1.637 sum -3.450 -4.151 -19.178 19.923 Atomic orbital electron populations 1.21759 0.92863 1.03519 1.02464 1.22842 0.96565 0.82357 1.01310 1.88007 1.19328 1.28528 1.95199 1.22007 0.83449 0.95056 0.98477 0.88148 1.22207 1.02673 1.04325 0.92470 1.21131 0.82620 0.87890 0.79518 1.90663 1.51719 1.53670 1.50310 1.45599 1.06466 1.25346 1.57244 1.21646 0.96759 0.86147 0.95074 1.21100 0.89011 0.89934 0.93041 1.42242 1.58496 1.31620 1.04048 1.18768 1.28123 1.03593 0.84212 0.93579 1.25548 1.03017 1.01383 0.95854 1.69917 1.53362 1.34064 1.06612 0.85410 0.78586 0.78436 0.79324 1.20634 1.23237 1.16059 1.23338 0.99391 0.97166 0.99463 1.22601 0.96230 0.99657 0.97279 1.23152 0.98043 1.00529 0.94327 0.88482 0.93500 0.91775 0.90590 0.93288 0.91995 0.88962 0.89093 0.75335 0.91036 0.95959 0.79504 0.93621 0.88996 0.94058 0.91376 0.89414 0.90055 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.05 0.93 6.47 71.98 0.47 1.40 16 3 O -0.39 -11.52 9.52 -129.94 -1.24 -12.76 16 4 C 0.07 1.85 3.14 29.85 0.09 1.94 16 5 H 0.10 2.27 7.79 -2.39 -0.02 2.25 16 6 C -0.16 -2.72 9.42 71.98 0.68 -2.04 16 7 C 0.50 17.63 7.23 87.66 0.63 18.26 16 8 O -0.58 -26.70 16.50 16.00 0.26 -26.44 16 9 N -0.69 -21.94 5.34 -463.06 -2.47 -24.42 16 10 C 0.13 4.70 5.03 86.38 0.43 5.14 16 11 C 0.16 5.37 0.80 4.13 0.00 5.38 16 12 N -0.72 -30.20 4.98 -300.98 -1.50 -31.70 16 13 C -0.22 -11.83 9.56 84.04 0.80 -11.03 16 14 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 15 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 16 N -0.99 -63.64 13.97 21.65 0.30 -63.33 16 17 Si 0.96 43.20 27.68 68.60 1.90 45.10 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 20 H -0.24 -8.99 6.61 99.48 0.66 -8.34 16 21 C -0.15 -4.93 7.28 31.12 0.23 -4.70 16 22 C -0.12 -3.02 7.99 31.12 0.25 -2.77 16 23 C -0.12 -2.83 7.08 31.12 0.22 -2.61 16 24 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.12 7.87 -2.39 -0.02 1.11 16 28 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.20 7.56 -2.39 -0.02 1.18 16 31 H 0.09 1.14 7.87 -2.39 -0.02 1.12 16 32 H 0.41 10.50 7.72 -92.71 -0.72 9.78 16 33 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 34 H 0.02 1.03 7.85 -2.39 -0.02 1.01 16 35 H 0.37 14.39 5.79 -92.71 -0.54 13.85 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.09 2.56 8.04 -2.39 -0.02 2.54 16 38 H 0.04 1.62 7.87 -2.38 -0.02 1.60 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.08 1.65 8.09 -2.38 -0.02 1.64 16 42 H 0.11 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -78.41 344.51 1.97 -76.44 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.30 Total: 33.53 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.02 Total: 3.58 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -3.67 Total: -119.45 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.97 Total: -39.20 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.90 Total: 45.10 kcal Total: -78.41 1.97 -76.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724782651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.147 kcal (2) G-P(sol) polarization free energy of solvation -78.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds