Wall clock time and date at job start Mon Mar 30 2020 01:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99863 * 2 1 4 4 C 1.53001 * 109.46835 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46710 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00567 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99874 * 179.97438 * 5 4 3 8 8 C 1.47432 * 125.64607 * 4.58227 * 7 5 4 9 9 C 1.54907 * 104.82686 * 155.83588 * 8 7 5 10 10 C 1.55156 * 101.58781 * 37.01058 * 9 8 7 11 11 C 1.47021 * 125.64750 * 184.54150 * 7 5 4 12 12 H 1.08995 * 109.88136 * 300.66209 * 11 7 5 13 13 C 1.52996 * 109.88383 * 61.68070 * 11 7 5 14 14 N 1.46505 * 109.47001 * 185.55814 * 13 11 7 15 15 C 1.46498 * 119.99906 * 264.10858 * 14 13 11 16 16 C 1.36931 * 120.00059 * 84.11171 * 14 13 11 17 17 H 1.08002 * 119.99817 * 334.11796 * 16 14 13 18 18 C 1.38810 * 120.00054 * 153.84709 * 16 14 13 19 19 N 1.31611 * 120.00079 * 352.58712 * 18 16 14 20 20 Si 1.86803 * 120.00010 * 172.59006 * 18 16 14 21 21 H 1.48499 * 109.46979 * 89.99576 * 20 18 16 22 22 H 1.48496 * 109.47106 * 209.99850 * 20 18 16 23 23 H 1.48506 * 109.46963 * 329.99758 * 20 18 16 24 24 H 1.09003 * 109.47644 * 300.00261 * 1 2 3 25 25 H 1.09000 * 109.47226 * 59.99978 * 1 2 3 26 26 H 1.08996 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47427 * 59.99700 * 3 2 1 28 28 H 1.08999 * 109.46922 * 299.99794 * 3 2 1 29 29 H 1.08992 * 109.47269 * 59.99985 * 4 3 2 30 30 H 1.08999 * 109.46988 * 299.99497 * 4 3 2 31 31 H 1.08994 * 110.36563 * 274.67323 * 8 7 5 32 32 H 1.08996 * 110.36854 * 36.88776 * 8 7 5 33 33 H 1.09007 * 110.99879 * 155.08660 * 9 8 7 34 34 H 1.09002 * 111.00470 * 278.93200 * 9 8 7 35 35 H 1.08994 * 110.72235 * 206.13243 * 10 9 8 36 36 H 1.09003 * 110.71888 * 82.85597 * 10 9 8 37 37 H 1.08998 * 109.47458 * 65.55812 * 13 11 7 38 38 H 1.08997 * 109.46652 * 305.55243 * 13 11 7 39 39 H 1.09000 * 109.47234 * 273.63193 * 15 14 13 40 40 H 1.09009 * 109.47090 * 33.63778 * 15 14 13 41 41 H 1.09006 * 109.46786 * 153.62876 * 15 14 13 42 42 H 0.96997 * 120.00484 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5427 -0.0017 7 7 5.4887 2.7023 -0.0014 8 6 6.4681 1.6044 -0.0967 9 6 7.7475 2.2631 -0.6702 10 6 7.7232 3.6494 0.0261 11 6 6.2163 3.9764 0.0926 12 1 5.9383 4.6243 -0.7386 13 6 5.8913 4.6645 1.4199 14 7 6.5139 5.9904 1.4478 15 6 7.8157 6.1749 2.0938 16 6 5.8790 7.0572 0.8700 17 1 5.1774 6.8967 0.0648 18 6 6.1328 8.3445 1.3231 19 7 6.8680 8.5306 2.3987 20 14 5.4307 9.8128 0.4062 21 1 4.0940 10.1486 0.9589 22 1 6.3391 10.9766 0.5659 23 1 5.3010 9.4803 -1.0354 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8567 0.6440 -0.8908 30 1 3.8574 0.6437 0.8892 31 1 6.6663 1.1863 0.8902 32 1 6.1041 0.8288 -0.7703 33 1 8.6370 1.6997 -0.3880 34 1 7.6809 2.3685 -1.7530 35 1 8.2526 4.3908 -0.5723 36 1 8.1485 3.5855 1.0277 37 1 6.2770 4.0647 2.2442 38 1 4.8110 4.7683 1.5203 39 1 7.6703 6.3593 3.1582 40 1 8.4185 5.2767 1.9596 41 1 8.3271 7.0261 1.6441 42 1 7.0457 9.4301 2.7152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725037767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:57 Heat of formation + Delta-G solvation = -56.610282 kcal Electronic energy + Delta-G solvation = -21578.263924 eV Core-core repulsion = 18366.368049 eV Total energy + Delta-G solvation = -3211.895875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98837 -38.09284 -37.16843 -35.22816 -32.28865 -31.34411 -30.99426 -28.96003 -26.74609 -25.99803 -25.12039 -24.05464 -22.29014 -21.05620 -20.34527 -18.58538 -17.28565 -16.65317 -16.37210 -16.12593 -15.63636 -15.16670 -14.72014 -14.64500 -14.24387 -13.61429 -13.41264 -13.13321 -13.02628 -12.87648 -12.53117 -12.03235 -11.91300 -11.81012 -11.52583 -11.31927 -11.11058 -10.96998 -10.84207 -10.76757 -10.60169 -10.34735 -10.06512 -9.84842 -9.80221 -9.75071 -9.45302 -8.52663 -8.29958 -6.59553 -5.66590 -3.13629 2.86721 3.02883 3.44227 3.49875 3.52679 3.79097 4.57760 4.64706 4.72207 4.90392 4.92249 5.08231 5.14012 5.19302 5.26656 5.38061 5.46793 5.47082 5.55954 5.60631 5.69348 5.71586 5.75628 5.79177 5.90087 6.07105 6.26977 6.28344 6.52023 6.60247 6.79403 6.89197 6.97822 7.08394 7.44549 7.76094 7.82004 7.91593 8.42589 8.52384 9.33844 9.94663 10.44599 11.40051 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.004881 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.835182 B = 5735.560877 C = 6825.628677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.075 3.925 4 C -0.133 4.133 5 C 0.527 3.473 6 O -0.532 6.532 7 N -0.613 5.613 8 C 0.100 3.900 9 C -0.136 4.136 10 C -0.115 4.115 11 C 0.115 3.885 12 H 0.075 0.925 13 C 0.146 3.854 14 N -0.596 5.596 15 C 0.163 3.837 16 C -0.249 4.249 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.912 5.912 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.280 1.280 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.015 0.985 40 H -0.006 1.006 41 H 0.057 0.943 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 -18.453 -5.232 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.317 6.317 3 C -0.001 4.001 4 C -0.174 4.174 5 C 0.314 3.686 6 O -0.408 6.408 7 N -0.348 5.348 8 C -0.024 4.024 9 C -0.174 4.174 10 C -0.153 4.153 11 C 0.010 3.990 12 H 0.094 0.906 13 C 0.018 3.982 14 N -0.319 5.319 15 C 0.018 3.982 16 C -0.379 4.379 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.557 5.557 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.205 1.205 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.013 0.987 41 H 0.076 0.924 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.905 -17.906 -5.135 18.853 hybrid contribution -0.492 1.040 -0.404 1.219 sum -3.397 -16.866 -5.539 18.075 Atomic orbital electron populations 1.22715 0.80767 1.02502 1.00290 1.87778 1.19945 1.28332 1.95606 1.22194 0.92060 0.83901 1.01993 1.21444 0.95166 0.95613 1.05128 1.19929 0.80968 0.90785 0.76891 1.90770 1.59897 1.40682 1.49475 1.48656 1.04591 1.09038 1.72482 1.22305 0.89346 0.90095 1.00639 1.22807 0.96776 0.97293 1.00511 1.22636 0.95626 0.95711 1.01315 1.22603 0.90269 0.83654 1.02465 0.90641 1.20983 0.97988 0.87092 0.92156 1.43785 1.18614 1.03132 1.66389 1.20849 0.85099 0.95831 0.96403 1.19220 1.21756 0.85215 1.11681 0.91481 1.25083 0.99953 0.98048 0.96452 1.70044 1.42140 1.20385 1.23169 0.86254 0.78457 0.82430 0.79406 1.21418 1.21694 1.20528 0.93916 0.93997 0.89714 0.92164 0.92349 0.88557 0.88319 0.91474 0.91071 0.90250 0.90988 0.90192 0.90593 0.94648 0.92712 0.96619 0.98729 0.92446 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.40 -4.71 10.70 -35.23 -0.38 -5.08 16 3 C 0.08 0.95 5.23 37.16 0.19 1.14 16 4 C -0.13 -1.59 5.15 -27.88 -0.14 -1.73 16 5 C 0.53 8.55 7.57 -10.99 -0.08 8.47 16 6 O -0.53 -11.07 15.14 5.55 0.08 -10.98 16 7 N -0.61 -9.45 3.06 -163.02 -0.50 -9.95 16 8 C 0.10 1.09 6.66 -2.53 -0.02 1.07 16 9 C -0.14 -1.49 7.08 -24.58 -0.17 -1.66 16 10 C -0.11 -1.73 5.65 -24.89 -0.14 -1.87 16 11 C 0.11 2.12 3.05 -66.95 -0.20 1.92 16 12 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 13 C 0.15 3.25 5.13 -4.04 -0.02 3.23 16 14 N -0.60 -15.47 2.80 -181.12 -0.51 -15.98 16 15 C 0.16 4.03 8.72 59.85 0.52 4.55 16 16 C -0.25 -7.16 9.63 -15.06 -0.15 -7.31 16 17 H 0.07 1.96 7.84 -52.49 -0.41 1.55 16 18 C 0.00 0.07 5.15 -17.43 -0.09 -0.02 16 19 N -0.91 -27.27 10.66 55.49 0.59 -26.68 16 20 Si 0.90 22.77 29.56 -169.99 -5.02 17.74 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 28 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.10 0.97 7.77 -51.93 -0.40 0.56 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.62 7.50 -51.93 -0.39 0.23 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 37 H 0.04 0.74 7.89 -51.93 -0.41 0.33 16 38 H 0.05 1.37 6.80 -51.93 -0.35 1.02 16 39 H 0.02 0.42 7.78 -51.93 -0.40 0.01 16 40 H -0.01 -0.12 6.14 -51.92 -0.32 -0.44 16 41 H 0.06 1.54 6.80 -51.93 -0.35 1.18 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -33.42 335.95 -7.01 -40.44 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -7.15 Total: -3.78 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 0.81 Total: 9.21 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.42 Total: -52.61 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.29 Total: -16.07 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.42 -7.01 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725037767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.172 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds