Wall clock time and date at job start Mon Mar 30 2020 01:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99863 * 2 1 4 4 C 1.53001 * 109.46835 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46710 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00567 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99874 * 179.97438 * 5 4 3 8 8 C 1.47432 * 125.64607 * 4.58227 * 7 5 4 9 9 C 1.54907 * 104.82686 * 155.83588 * 8 7 5 10 10 C 1.55156 * 101.58781 * 37.01058 * 9 8 7 11 11 C 1.47021 * 125.64750 * 184.54150 * 7 5 4 12 12 H 1.08995 * 109.88136 * 300.66209 * 11 7 5 13 13 C 1.52996 * 109.88383 * 61.68070 * 11 7 5 14 14 N 1.46505 * 109.47001 * 185.55814 * 13 11 7 15 15 C 1.46498 * 119.99906 * 264.10858 * 14 13 11 16 16 C 1.36931 * 120.00059 * 84.11171 * 14 13 11 17 17 H 1.08002 * 119.99817 * 334.11796 * 16 14 13 18 18 C 1.38810 * 120.00054 * 153.84709 * 16 14 13 19 19 N 1.31611 * 120.00079 * 352.58712 * 18 16 14 20 20 Si 1.86803 * 120.00010 * 172.59006 * 18 16 14 21 21 H 1.48499 * 109.46979 * 89.99576 * 20 18 16 22 22 H 1.48496 * 109.47106 * 209.99850 * 20 18 16 23 23 H 1.48506 * 109.46963 * 329.99758 * 20 18 16 24 24 H 1.09003 * 109.47644 * 300.00261 * 1 2 3 25 25 H 1.09000 * 109.47226 * 59.99978 * 1 2 3 26 26 H 1.08996 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47427 * 59.99700 * 3 2 1 28 28 H 1.08999 * 109.46922 * 299.99794 * 3 2 1 29 29 H 1.08992 * 109.47269 * 59.99985 * 4 3 2 30 30 H 1.08999 * 109.46988 * 299.99497 * 4 3 2 31 31 H 1.08994 * 110.36563 * 274.67323 * 8 7 5 32 32 H 1.08996 * 110.36854 * 36.88776 * 8 7 5 33 33 H 1.09007 * 110.99879 * 155.08660 * 9 8 7 34 34 H 1.09002 * 111.00470 * 278.93200 * 9 8 7 35 35 H 1.08994 * 110.72235 * 206.13243 * 10 9 8 36 36 H 1.09003 * 110.71888 * 82.85597 * 10 9 8 37 37 H 1.08998 * 109.47458 * 65.55812 * 13 11 7 38 38 H 1.08997 * 109.46652 * 305.55243 * 13 11 7 39 39 H 1.09000 * 109.47234 * 273.63193 * 15 14 13 40 40 H 1.09009 * 109.47090 * 33.63778 * 15 14 13 41 41 H 1.09006 * 109.46786 * 153.62876 * 15 14 13 42 42 H 0.96997 * 120.00484 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5427 -0.0017 7 7 5.4887 2.7023 -0.0014 8 6 6.4681 1.6044 -0.0967 9 6 7.7475 2.2631 -0.6702 10 6 7.7232 3.6494 0.0261 11 6 6.2163 3.9764 0.0926 12 1 5.9383 4.6243 -0.7386 13 6 5.8913 4.6645 1.4199 14 7 6.5139 5.9904 1.4478 15 6 7.8157 6.1749 2.0938 16 6 5.8790 7.0572 0.8700 17 1 5.1774 6.8967 0.0648 18 6 6.1328 8.3445 1.3231 19 7 6.8680 8.5306 2.3987 20 14 5.4307 9.8128 0.4062 21 1 4.0940 10.1486 0.9589 22 1 6.3391 10.9766 0.5659 23 1 5.3010 9.4803 -1.0354 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8567 0.6440 -0.8908 30 1 3.8574 0.6437 0.8892 31 1 6.6663 1.1863 0.8902 32 1 6.1041 0.8288 -0.7703 33 1 8.6370 1.6997 -0.3880 34 1 7.6809 2.3685 -1.7530 35 1 8.2526 4.3908 -0.5723 36 1 8.1485 3.5855 1.0277 37 1 6.2770 4.0647 2.2442 38 1 4.8110 4.7683 1.5203 39 1 7.6703 6.3593 3.1582 40 1 8.4185 5.2767 1.9596 41 1 8.3271 7.0261 1.6441 42 1 7.0457 9.4301 2.7152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725037767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:57 Heat of formation + Delta-G solvation = -79.495556 kcal Electronic energy + Delta-G solvation = -21579.256304 eV Core-core repulsion = 18366.368049 eV Total energy + Delta-G solvation = -3212.888255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26152 -39.14245 -38.40072 -37.11438 -33.77585 -33.04166 -32.06939 -30.52197 -28.02421 -27.52873 -26.79728 -25.21125 -23.52785 -22.72250 -21.70026 -19.86070 -18.73716 -18.30858 -17.64709 -17.18534 -16.88215 -16.57805 -16.14315 -15.73963 -15.58707 -15.32980 -15.13431 -14.61908 -14.29197 -14.03461 -13.79412 -13.66010 -13.13654 -13.03440 -12.82207 -12.81669 -12.59870 -12.40967 -12.35310 -12.20878 -12.15559 -11.97995 -11.91621 -11.59379 -11.47682 -10.86251 -10.69490 -10.66019 -9.70384 -8.69987 -7.88404 -5.38263 1.40681 1.42279 1.51911 1.61751 1.88570 2.47464 2.85859 3.26306 3.57633 3.68325 3.81434 3.86667 3.99020 4.09026 4.16540 4.36155 4.43091 4.48722 4.50874 4.52431 4.53944 4.72191 4.80598 4.82143 4.84169 4.87249 4.92563 5.01979 5.07579 5.15212 5.19358 5.32286 5.44259 5.52759 5.58218 5.69905 6.10900 6.32128 6.61812 7.13999 7.18690 7.83732 8.26825 9.15597 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.004881 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.835182 B = 5735.560877 C = 6825.628677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.078 3.922 4 C -0.118 4.118 5 C 0.518 3.482 6 O -0.591 6.591 7 N -0.613 5.613 8 C 0.094 3.906 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.124 3.876 12 H 0.033 0.967 13 C 0.152 3.848 14 N -0.612 5.612 15 C 0.179 3.821 16 C -0.262 4.262 17 H 0.051 0.949 18 C -0.046 4.046 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.288 1.288 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.108 0.892 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.016 0.984 39 H -0.010 1.010 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -21.253 -6.056 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.001 3.999 4 C -0.157 4.157 5 C 0.308 3.692 6 O -0.472 6.472 7 N -0.347 5.347 8 C -0.027 4.027 9 C -0.159 4.159 10 C -0.150 4.150 11 C 0.018 3.982 12 H 0.051 0.949 13 C 0.025 3.975 14 N -0.335 5.335 15 C 0.034 3.966 16 C -0.392 4.392 17 H 0.069 0.931 18 C -0.241 4.241 19 N -0.583 5.583 20 Si 0.794 3.206 21 H -0.215 1.215 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.126 0.874 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.008 0.992 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.065 -20.778 -5.971 21.717 hybrid contribution -0.807 1.845 -0.130 2.018 sum -2.873 -18.933 -6.101 20.098 Atomic orbital electron populations 1.22951 0.79328 1.04171 1.00632 1.87750 1.21543 1.27430 1.95609 1.22062 0.92864 0.84235 1.00727 1.21378 0.94154 0.92683 1.07515 1.20813 0.80964 0.91934 0.75502 1.90746 1.61368 1.42998 1.52060 1.48750 1.05102 1.09181 1.71641 1.22694 0.88023 0.89189 1.02815 1.22820 0.98283 0.94422 1.00373 1.22544 0.92183 0.98375 1.01891 1.22114 0.93248 0.84711 0.98104 0.94852 1.20994 0.95483 0.86112 0.94957 1.43955 1.19227 1.03947 1.66412 1.20623 0.84927 0.96748 0.94292 1.19325 1.21697 0.86607 1.11573 0.93081 1.25787 1.00567 1.00378 0.97416 1.70189 1.43083 1.20737 1.24295 0.85289 0.77594 0.79256 0.78413 1.21460 1.20873 1.19921 0.93772 0.93545 0.87383 0.93868 0.93470 0.85609 0.86019 0.89412 0.87573 0.86758 0.90518 0.91401 0.90419 0.93125 0.96546 0.99177 0.94478 0.94958 0.94018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.81 10.70 -148.98 -1.59 -10.40 16 3 C 0.08 1.91 5.23 71.98 0.38 2.29 16 4 C -0.12 -2.53 5.15 29.85 0.15 -2.37 16 5 C 0.52 16.63 7.57 87.66 0.66 17.29 16 6 O -0.59 -25.80 15.14 -3.04 -0.05 -25.85 16 7 N -0.61 -18.07 3.06 -788.05 -2.42 -20.48 16 8 C 0.09 1.65 6.66 86.85 0.58 2.22 16 9 C -0.12 -2.15 7.08 31.99 0.23 -1.92 16 10 C -0.11 -3.17 5.65 31.79 0.18 -2.99 16 11 C 0.12 4.63 3.05 45.34 0.14 4.77 16 12 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 13 C 0.15 6.95 5.13 86.38 0.44 7.39 16 14 N -0.61 -32.75 2.80 -726.93 -2.03 -34.78 16 15 C 0.18 8.98 8.72 127.77 1.11 10.09 16 16 C -0.26 -15.65 9.63 84.03 0.81 -14.84 16 17 H 0.05 3.15 7.84 -2.91 -0.02 3.13 16 18 C -0.05 -2.75 5.15 84.86 0.44 -2.31 16 19 N -0.94 -57.35 10.66 21.65 0.23 -57.12 16 20 Si 0.97 47.91 29.56 68.60 2.03 49.94 16 21 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 22 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 24 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 28 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 29 H 0.13 2.00 7.77 -2.39 -0.02 1.98 16 30 H 0.12 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.11 1.21 7.50 -2.39 -0.02 1.20 16 33 H 0.11 1.33 8.14 -2.38 -0.02 1.32 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.18 6.34 -2.39 -0.02 2.16 16 37 H 0.05 2.12 7.89 -2.39 -0.02 2.10 16 38 H 0.02 0.86 6.80 -2.39 -0.02 0.84 16 39 H -0.01 -0.56 7.78 -2.39 -0.02 -0.57 16 40 H 0.04 1.52 6.14 -2.38 -0.01 1.50 16 41 H 0.03 1.75 6.80 -2.38 -0.02 1.74 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -77.27 335.95 3.52 -73.76 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 0.98 Total: 3.68 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.37 Total: 21.27 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.22 Total: -112.38 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.64 Total: -36.25 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -77.27 3.52 -73.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725037767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.737 kcal (2) G-P(sol) polarization free energy of solvation -77.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds