Wall clock time and date at job start Mon Mar 30 2020 01:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47298 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99449 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.47428 * 125.64858 * 359.69785 * 8 6 5 10 10 C 1.54686 * 104.94096 * 204.07125 * 9 8 6 11 11 C 1.55155 * 101.67905 * 323.27860 * 10 9 8 12 12 H 1.09010 * 110.86819 * 276.89999 * 11 10 9 13 13 N 1.46497 * 110.72270 * 153.70206 * 11 10 9 14 14 C 1.36938 * 120.00314 * 91.47112 * 13 11 10 15 15 H 1.08002 * 119.99870 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99956 * 179.97438 * 14 13 11 17 17 N 1.31613 * 120.00452 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46956 * 60.00626 * 18 16 14 20 20 H 1.48504 * 109.47044 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47224 * 300.00560 * 18 16 14 22 22 C 1.47022 * 125.64932 * 180.02562 * 8 6 5 23 23 H 1.09000 * 109.88435 * 59.33467 * 22 8 6 24 24 C 1.53001 * 109.88276 * 298.32147 * 22 8 6 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 31 31 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 32 32 H 1.08997 * 109.47286 * 300.00017 * 5 4 3 33 33 H 1.09008 * 109.47201 * 60.00236 * 5 4 3 34 34 H 1.09007 * 110.36249 * 323.00224 * 9 8 6 35 35 H 1.09004 * 110.36832 * 85.32287 * 9 8 6 36 36 H 1.09000 * 111.10254 * 205.10513 * 10 9 8 37 37 H 1.09004 * 110.84764 * 81.33445 * 10 9 8 38 38 H 0.97003 * 119.99771 * 271.47580 * 13 11 10 39 39 H 0.96994 * 120.00464 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47122 * 61.45624 * 24 22 8 41 41 H 1.09001 * 109.47274 * 181.44823 * 24 22 8 42 42 H 1.08998 * 109.47224 * 301.45609 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3275 3.0577 0.0011 7 8 6.0149 2.0585 0.0020 8 7 5.9070 4.2744 0.0003 9 6 5.1949 5.5653 -0.0082 10 6 6.2006 6.5715 -0.6155 11 6 7.5447 6.0654 -0.0285 12 1 7.6999 6.4543 0.9779 13 7 8.6625 6.4317 -0.9017 14 6 9.3309 7.6099 -0.7006 15 1 9.0342 8.2688 0.1021 16 6 10.3903 7.9567 -1.5277 17 7 10.7522 7.1535 -2.5056 18 14 11.3026 9.5635 -1.2529 19 1 11.8939 9.5703 0.1093 20 1 12.3831 9.6983 -2.2627 21 1 10.3557 10.6996 -1.3871 22 6 7.3541 4.5343 0.0008 23 1 7.8119 4.0844 -0.8802 24 6 7.9862 3.9556 1.2682 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8332 0.9769 0.8908 31 1 3.8340 0.9766 -0.8891 32 1 3.4228 3.4215 -0.8905 33 1 3.4220 3.4226 0.8895 34 1 4.3006 5.5011 -0.6281 35 1 4.9330 5.8607 1.0078 36 1 5.9875 7.5878 -0.2841 37 1 6.2018 6.5099 -1.7038 38 1 8.9291 5.8398 -1.6225 39 1 11.4922 7.3961 -3.0837 40 1 7.8365 2.8761 1.2887 41 1 9.0541 4.1743 1.2741 42 1 7.5186 4.4040 2.1448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725554051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:22 Heat of formation + Delta-G solvation = -78.051834 kcal Electronic energy + Delta-G solvation = -20913.788212 eV Core-core repulsion = 17700.962562 eV Total energy + Delta-G solvation = -3212.825651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06151 -38.29344 -37.35250 -34.14658 -32.78235 -31.64035 -30.95828 -30.25626 -28.92079 -25.22163 -24.25641 -23.04061 -22.97540 -21.98464 -20.09445 -18.71140 -17.41594 -17.20660 -16.65481 -16.20391 -15.80042 -15.11926 -14.86988 -14.40253 -14.19198 -13.62358 -13.59001 -13.38571 -12.95160 -12.79312 -12.54141 -12.34615 -12.10050 -11.91981 -11.82602 -11.62537 -11.29038 -11.24966 -11.15290 -11.03879 -10.84046 -10.59740 -10.27988 -10.06286 -9.79635 -9.79311 -9.58989 -8.95974 -8.41801 -7.05530 -5.83155 -3.13828 2.75742 2.92281 3.40438 3.45042 3.46202 3.65143 4.53341 4.62586 4.76625 4.80635 4.89629 5.00725 5.03373 5.12380 5.25571 5.31249 5.35423 5.44300 5.48622 5.58839 5.59779 5.64799 5.67507 5.71786 5.79164 5.82722 5.93963 6.08412 6.12181 6.28873 6.44901 6.57443 6.60466 6.72179 6.90213 6.97668 7.63341 7.74454 8.30006 8.34412 9.45469 9.99837 10.34532 11.38922 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048430 B = 0.003129 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.020126 B = 8946.538476 C = 9123.974434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.134 4.134 6 C 0.530 3.470 7 O -0.547 6.547 8 N -0.608 5.608 9 C 0.097 3.903 10 C -0.157 4.157 11 C 0.177 3.823 12 H 0.068 0.932 13 N -0.714 5.714 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.125 3.875 23 H 0.077 0.923 24 C -0.154 4.154 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.025 -9.581 6.129 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.174 4.174 6 C 0.318 3.682 7 O -0.426 6.426 8 N -0.341 5.341 9 C -0.026 4.026 10 C -0.198 4.198 11 C 0.065 3.935 12 H 0.086 0.914 13 N -0.354 5.354 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.021 3.979 23 H 0.095 0.905 24 C -0.212 4.212 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.220 0.780 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.693 -9.858 6.168 21.172 hybrid contribution 0.725 0.587 -0.199 0.953 sum -16.968 -9.271 5.970 20.236 Atomic orbital electron populations 1.21747 0.93774 1.02190 1.03116 1.22441 0.95421 0.83692 1.00270 1.87802 1.21340 1.26649 1.95589 1.22112 0.80383 0.95574 1.01718 1.21438 0.92786 0.97788 1.05426 1.19952 0.89644 0.82081 0.76482 1.90690 1.65328 1.35743 1.50816 1.48568 1.08211 1.05305 1.72059 1.22369 0.96086 0.83446 1.00676 1.23540 0.96882 0.97868 1.01535 1.21246 0.87959 0.89244 0.95086 0.91429 1.42347 1.34473 1.23263 1.35331 1.19168 1.09974 0.96347 1.12113 0.91025 1.24772 0.99090 0.98715 0.98062 1.69649 1.30605 1.37313 1.20191 0.86250 0.79351 0.83235 0.77202 1.21174 1.21678 1.21188 1.21978 0.79107 0.97841 0.98951 0.90492 1.22036 1.01319 1.01286 0.96533 0.91874 0.91837 0.91149 0.93313 0.93354 0.92456 0.92406 0.88218 0.88287 0.91180 0.91598 0.90475 0.90679 0.77983 0.93293 0.92063 0.91137 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.39 -4.45 10.34 -35.23 -0.36 -4.81 16 4 C 0.08 0.92 5.23 37.16 0.19 1.11 16 5 C -0.13 -1.54 5.08 -27.88 -0.14 -1.68 16 6 C 0.53 8.04 7.64 -10.99 -0.08 7.96 16 7 O -0.55 -10.08 15.02 5.55 0.08 -10.00 16 8 N -0.61 -9.26 3.07 -163.15 -0.50 -9.76 16 9 C 0.10 1.25 6.68 -2.65 -0.02 1.23 16 10 C -0.16 -2.51 6.76 -24.70 -0.17 -2.68 16 11 C 0.18 3.34 3.15 -66.10 -0.21 3.14 16 12 H 0.07 1.28 7.80 -51.92 -0.40 0.88 16 13 N -0.71 -17.23 5.22 -51.65 -0.27 -17.50 16 14 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 18 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.12 2.21 3.21 -66.95 -0.21 2.00 16 23 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 24 C -0.15 -2.59 9.10 37.16 0.34 -2.25 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.10 1.03 7.84 -51.93 -0.41 0.62 16 33 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.39 10.08 7.57 -40.82 -0.31 9.77 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -30.91 344.02 -7.39 -38.30 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.30 Total: 6.75 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 0.08 Total: 1.87 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.05 Total: -54.11 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.28 Total: -14.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.91 -7.39 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725554051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.751 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds