Wall clock time and date at job start Mon Mar 30 2020 01:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47298 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99449 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.47428 * 125.64858 * 359.69785 * 8 6 5 10 10 C 1.54686 * 104.94096 * 204.07125 * 9 8 6 11 11 C 1.55155 * 101.67905 * 323.27860 * 10 9 8 12 12 H 1.09010 * 110.86819 * 276.89999 * 11 10 9 13 13 N 1.46497 * 110.72270 * 153.70206 * 11 10 9 14 14 C 1.36938 * 120.00314 * 91.47112 * 13 11 10 15 15 H 1.08002 * 119.99870 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99956 * 179.97438 * 14 13 11 17 17 N 1.31613 * 120.00452 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46956 * 60.00626 * 18 16 14 20 20 H 1.48504 * 109.47044 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47224 * 300.00560 * 18 16 14 22 22 C 1.47022 * 125.64932 * 180.02562 * 8 6 5 23 23 H 1.09000 * 109.88435 * 59.33467 * 22 8 6 24 24 C 1.53001 * 109.88276 * 298.32147 * 22 8 6 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 31 31 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 32 32 H 1.08997 * 109.47286 * 300.00017 * 5 4 3 33 33 H 1.09008 * 109.47201 * 60.00236 * 5 4 3 34 34 H 1.09007 * 110.36249 * 323.00224 * 9 8 6 35 35 H 1.09004 * 110.36832 * 85.32287 * 9 8 6 36 36 H 1.09000 * 111.10254 * 205.10513 * 10 9 8 37 37 H 1.09004 * 110.84764 * 81.33445 * 10 9 8 38 38 H 0.97003 * 119.99771 * 271.47580 * 13 11 10 39 39 H 0.96994 * 120.00464 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47122 * 61.45624 * 24 22 8 41 41 H 1.09001 * 109.47274 * 181.44823 * 24 22 8 42 42 H 1.08998 * 109.47224 * 301.45609 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3275 3.0577 0.0011 7 8 6.0149 2.0585 0.0020 8 7 5.9070 4.2744 0.0003 9 6 5.1949 5.5653 -0.0082 10 6 6.2006 6.5715 -0.6155 11 6 7.5447 6.0654 -0.0285 12 1 7.6999 6.4543 0.9779 13 7 8.6625 6.4317 -0.9017 14 6 9.3309 7.6099 -0.7006 15 1 9.0342 8.2688 0.1021 16 6 10.3903 7.9567 -1.5277 17 7 10.7522 7.1535 -2.5056 18 14 11.3026 9.5635 -1.2529 19 1 11.8939 9.5703 0.1093 20 1 12.3831 9.6983 -2.2627 21 1 10.3557 10.6996 -1.3871 22 6 7.3541 4.5343 0.0008 23 1 7.8119 4.0844 -0.8802 24 6 7.9862 3.9556 1.2682 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8332 0.9769 0.8908 31 1 3.8340 0.9766 -0.8891 32 1 3.4228 3.4215 -0.8905 33 1 3.4220 3.4226 0.8895 34 1 4.3006 5.5011 -0.6281 35 1 4.9330 5.8607 1.0078 36 1 5.9875 7.5878 -0.2841 37 1 6.2018 6.5099 -1.7038 38 1 8.9291 5.8398 -1.6225 39 1 11.4922 7.3961 -3.0837 40 1 7.8365 2.8761 1.2887 41 1 9.0541 4.1743 1.2741 42 1 7.5186 4.4040 2.1448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725554051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:21 Heat of formation + Delta-G solvation = -98.539043 kcal Electronic energy + Delta-G solvation = -20914.676604 eV Core-core repulsion = 17700.962562 eV Total energy + Delta-G solvation = -3213.714043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31431 -39.27234 -38.56759 -35.91723 -33.84751 -33.10992 -32.25860 -31.32912 -30.34905 -26.85006 -25.42322 -24.62370 -23.66985 -23.17699 -21.56345 -19.97575 -19.15025 -18.38305 -17.64333 -17.29891 -16.89150 -16.59036 -16.17271 -15.60487 -15.33512 -15.22901 -14.90289 -14.66622 -14.38019 -13.99935 -13.57958 -13.35212 -13.19695 -13.13324 -12.97676 -12.88071 -12.71999 -12.59149 -12.51740 -12.20393 -12.10565 -12.02587 -12.00040 -11.71643 -11.53765 -10.95474 -10.83745 -10.60150 -9.67650 -9.02735 -7.93739 -5.23852 1.49597 1.52412 1.58140 1.58313 1.80785 2.57248 2.76208 3.37358 3.55843 3.76535 3.80197 3.95407 4.02738 4.12352 4.18291 4.19778 4.36937 4.38733 4.43200 4.46754 4.50969 4.53201 4.67062 4.71637 4.79432 4.80801 4.92847 4.95123 5.05210 5.05652 5.22246 5.25267 5.29161 5.34565 5.46584 5.54936 6.18492 6.26409 6.56009 7.10649 7.32776 8.05056 8.28665 9.29615 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048430 B = 0.003129 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.020126 B = 8946.538476 C = 9123.974434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.082 3.918 5 C -0.122 4.122 6 C 0.526 3.474 7 O -0.587 6.587 8 N -0.609 5.609 9 C 0.104 3.896 10 C -0.149 4.149 11 C 0.170 3.830 12 H 0.073 0.927 13 N -0.729 5.729 14 C -0.237 4.237 15 H 0.084 0.916 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.974 3.026 19 H -0.277 1.277 20 H -0.301 1.301 21 H -0.275 1.275 22 C 0.130 3.870 23 H 0.043 0.957 24 C -0.143 4.143 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.370 0.630 39 H 0.250 0.750 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 -8.756 7.590 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.005 3.995 5 C -0.162 4.162 6 C 0.317 3.683 7 O -0.468 6.468 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.190 4.190 11 C 0.060 3.940 12 H 0.091 0.909 13 N -0.368 5.368 14 C -0.369 4.369 15 H 0.102 0.898 16 C -0.269 4.269 17 N -0.622 5.622 18 Si 0.803 3.197 19 H -0.204 1.204 20 H -0.227 1.227 21 H -0.201 1.201 22 C 0.026 3.974 23 H 0.061 0.939 24 C -0.202 4.202 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.202 0.798 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.293 -9.017 7.677 23.496 hybrid contribution 1.436 0.245 -0.616 1.581 sum -18.858 -8.772 7.061 21.964 Atomic orbital electron populations 1.21758 0.92301 1.03453 1.02946 1.22685 0.96645 0.82726 1.00753 1.87779 1.20719 1.28184 1.95620 1.22001 0.80821 0.95731 1.00931 1.21394 0.89417 0.97995 1.07376 1.20659 0.91159 0.81241 0.75277 1.90677 1.66573 1.37064 1.52479 1.48617 1.07061 1.06537 1.71964 1.22531 0.95645 0.80797 1.02787 1.23356 0.95713 0.99595 1.00351 1.21452 0.87864 0.90118 0.94526 0.90877 1.42527 1.35998 1.22530 1.35782 1.19598 1.09208 0.96789 1.11299 0.89841 1.25592 1.00690 1.02117 0.98488 1.69823 1.31403 1.39349 1.21673 0.85202 0.77880 0.79723 0.76883 1.20355 1.22735 1.20059 1.21666 0.81083 0.96775 0.97914 0.93895 1.21926 1.00572 1.00755 0.96914 0.91911 0.92084 0.89228 0.93020 0.92758 0.93066 0.93582 0.86444 0.85801 0.87994 0.88590 0.89134 0.92675 0.79772 0.94115 0.92948 0.92525 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -8.28 10.34 -148.98 -1.54 -9.82 16 4 C 0.08 1.78 5.23 71.98 0.38 2.16 16 5 C -0.12 -2.43 5.08 29.85 0.15 -2.28 16 6 C 0.53 15.13 7.64 87.66 0.67 15.80 16 7 O -0.59 -21.61 15.02 -3.04 -0.05 -21.66 16 8 N -0.61 -17.41 3.07 -788.48 -2.42 -19.83 16 9 C 0.10 2.27 6.68 86.78 0.58 2.85 16 10 C -0.15 -4.46 6.76 31.91 0.22 -4.24 16 11 C 0.17 6.31 3.15 46.18 0.15 6.45 16 12 H 0.07 2.64 7.80 -2.38 -0.02 2.62 16 13 N -0.73 -35.70 5.22 -317.33 -1.66 -37.35 16 14 C -0.24 -12.63 9.96 84.03 0.84 -11.79 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 16 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 17 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 18 Si 0.97 45.15 29.55 68.60 2.03 47.17 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 C 0.13 4.61 3.21 45.34 0.15 4.76 16 23 H 0.04 1.81 7.72 -2.39 -0.02 1.79 16 24 C -0.14 -4.81 9.10 71.98 0.66 -4.15 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.12 1.98 7.84 -2.39 -0.02 1.96 16 33 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.10 1.66 7.48 -2.38 -0.02 1.64 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.37 20.15 7.57 -92.71 -0.70 19.45 16 39 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.05 1.84 6.89 -2.39 -0.02 1.82 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -68.34 344.02 2.39 -65.95 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.28 Total: 28.60 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.46 Total: 5.95 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -3.79 Total: -116.19 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.59 Total: -31.47 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.34 2.39 -65.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725554051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.589 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds