Wall clock time and date at job start Mon Mar 30 2020 01:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00057 * 2 1 4 4 C 1.52994 * 109.47098 * 90.00228 * 3 2 1 5 5 H 1.09000 * 109.47452 * 59.99727 * 4 3 2 6 6 O 1.42908 * 109.47082 * 299.99814 * 4 3 2 7 7 C 1.53003 * 109.47385 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47345 * 184.99637 * 7 4 3 9 9 C 1.36936 * 120.00124 * 180.02562 * 8 7 4 10 10 H 1.08001 * 119.99971 * 359.72827 * 9 8 7 11 11 C 1.38815 * 120.00465 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99755 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00252 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47268 * 60.00330 * 13 11 9 15 15 H 1.48506 * 109.47061 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47024 * 299.99914 * 13 11 9 17 17 C 1.34782 * 119.99975 * 180.02562 * 2 1 3 18 18 O 1.21288 * 119.99770 * 185.05078 * 17 2 1 19 19 C 1.50700 * 119.99930 * 5.04443 * 17 2 1 20 20 C 1.54269 * 110.03192 * 262.27769 * 19 17 2 21 21 C 1.54962 * 104.15787 * 217.13833 * 20 19 17 22 22 C 1.54888 * 102.78083 * 37.88832 * 21 20 19 23 23 C 1.53868 * 110.03097 * 145.05992 * 19 17 2 24 24 H 1.09000 * 109.47042 * 95.22191 * 1 2 3 25 25 H 1.09000 * 109.47256 * 215.22047 * 1 2 3 26 26 H 1.09003 * 109.47257 * 335.22208 * 1 2 3 27 27 H 1.09000 * 109.47192 * 329.99796 * 3 2 1 28 28 H 1.09007 * 109.47250 * 210.00053 * 3 2 1 29 29 H 0.96702 * 113.99909 * 299.99960 * 6 4 3 30 30 H 1.09007 * 109.46654 * 64.99828 * 7 4 3 31 31 H 1.08993 * 109.47030 * 305.00230 * 7 4 3 32 32 H 0.97001 * 120.00385 * 359.97438 * 8 7 4 33 33 H 0.96999 * 120.00096 * 179.97438 * 12 11 9 34 34 H 1.08997 * 110.01854 * 23.66289 * 19 17 2 35 35 H 1.09003 * 110.48518 * 335.78051 * 20 19 17 36 36 H 1.08994 * 110.49031 * 98.42223 * 20 19 17 37 37 H 1.08997 * 110.72104 * 279.56849 * 21 20 19 38 38 H 1.09007 * 110.92297 * 156.29351 * 21 20 19 39 39 H 1.08993 * 110.48773 * 203.40779 * 22 21 20 40 40 H 1.09000 * 110.60076 * 80.81679 * 22 21 20 41 41 H 1.08996 * 110.03372 * 238.56987 * 23 19 17 42 42 H 1.08999 * 110.03281 * 359.94997 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4424 5 1 3.0416 0.9507 1.9563 6 8 1.2038 1.8813 2.1161 7 6 3.2181 3.0351 1.4425 8 7 3.5664 3.3977 2.8184 9 6 4.2585 4.5527 3.0678 10 1 4.5513 5.1941 2.2497 11 6 4.5891 4.8962 4.3715 12 7 4.2377 4.1113 5.3680 13 14 5.5337 6.4714 4.7115 14 1 4.7501 7.6340 4.2221 15 1 5.7608 6.6068 6.1729 16 1 6.8418 6.4254 4.0100 17 6 2.1389 -1.1672 -0.0005 18 8 3.3482 -1.1693 0.0920 19 6 1.3897 -2.4698 -0.1159 20 6 1.1860 -3.0878 1.2828 21 6 1.3461 -4.6116 1.0508 22 6 2.4852 -4.6810 0.0037 23 6 2.2150 -3.4822 -0.9291 24 1 -0.3633 -0.0935 -1.0234 25 1 -0.3634 -0.8395 0.5927 26 1 -0.3634 0.9331 0.4307 27 1 1.6084 2.0284 -0.5139 28 1 3.1499 1.1384 -0.5139 29 1 0.6267 2.5440 1.7126 30 1 2.5935 3.8157 1.0081 31 1 4.1287 2.9284 0.8532 32 1 3.3063 2.8201 3.5530 33 1 4.4690 4.3511 6.2790 34 1 0.4248 -2.3040 -0.5949 35 1 1.9466 -2.7255 1.9745 36 1 0.1883 -2.8610 1.6586 37 1 0.4269 -5.0395 0.6507 38 1 1.6368 -5.1172 1.9718 39 1 2.4350 -5.6165 -0.5532 40 1 3.4569 -4.5772 0.4865 41 1 1.6504 -3.8085 -1.8024 42 1 3.1570 -3.0312 -1.2411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725688010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:32 Heat of formation + Delta-G solvation = -86.771188 kcal Electronic energy + Delta-G solvation = -21321.014265 eV Core-core repulsion = 18107.810515 eV Total energy + Delta-G solvation = -3213.203750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38105 -37.94816 -36.81766 -35.15075 -33.98250 -31.40530 -30.20156 -28.90533 -28.74894 -26.75786 -25.30060 -22.94823 -21.33977 -21.08654 -20.82656 -18.78215 -17.56465 -17.11956 -16.45714 -16.05782 -15.54352 -15.22455 -14.81527 -14.58961 -14.39463 -13.69180 -13.55517 -13.40553 -12.99632 -12.92172 -12.59609 -12.38869 -12.04386 -11.91722 -11.50200 -11.43754 -11.30504 -11.24594 -10.94396 -10.91344 -10.77406 -10.69641 -10.63548 -10.18179 -9.88686 -9.70659 -9.53101 -8.85348 -8.45678 -6.88006 -5.70773 -3.00253 2.62745 2.97828 3.46957 3.50736 3.52410 4.28296 4.43444 4.44615 4.60139 4.76264 4.85408 5.07495 5.07709 5.14648 5.22716 5.25849 5.29843 5.35975 5.41203 5.47982 5.59692 5.60857 5.67500 5.72307 5.73410 5.82030 5.88511 5.98193 6.03959 6.11397 6.16528 6.28113 6.51597 6.58028 6.79071 7.36981 7.71669 8.04737 8.21438 8.47323 9.58423 10.16757 10.52444 11.51630 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030849 B = 0.003582 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.430148 B = 7815.806357 C = 8069.939414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.608 5.608 3 C 0.086 3.914 4 C 0.086 3.914 5 H 0.101 0.899 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.517 3.483 18 O -0.535 6.535 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.112 4.112 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.364 0.636 30 H 0.019 0.981 31 H 0.026 0.974 32 H 0.388 0.612 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 -15.564 -14.288 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.119 0.881 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.305 3.695 18 O -0.411 6.411 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.210 0.790 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.223 0.777 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.512 -15.864 -13.868 23.547 hybrid contribution 0.139 1.306 0.084 1.316 sum -10.372 -14.558 -13.785 22.573 Atomic orbital electron populations 1.21781 0.79481 1.03860 1.00866 1.47743 1.07006 1.05837 1.73503 1.22207 0.98311 0.84730 0.98457 1.22548 0.85374 0.98248 0.91240 0.88096 1.86637 1.28932 1.62602 1.57247 1.21225 0.96424 0.92719 0.89809 1.42241 1.67175 1.26176 1.01399 1.19184 1.27606 0.98529 0.92141 0.91325 1.24764 1.01627 0.98903 0.95625 1.69677 1.51440 1.38090 0.98646 0.86253 0.79812 0.83120 0.76889 1.21294 1.21653 1.21261 1.20661 0.87962 0.85176 0.75720 1.90710 1.14285 1.87046 1.49095 1.21976 0.99655 0.92971 0.98709 1.22317 1.02366 0.95383 0.94785 1.22500 0.98686 0.95545 0.99265 1.22346 0.99201 0.97567 0.96930 1.22099 1.00471 0.94897 0.97514 0.93089 0.91313 0.90297 0.90274 0.89075 0.78954 0.96312 0.95608 0.77748 0.93461 0.89214 0.90718 0.90981 0.91421 0.91234 0.91666 0.91193 0.91585 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 9.26 59.84 0.55 1.27 16 2 N -0.61 -7.55 2.80 -181.57 -0.51 -8.06 16 3 C 0.09 1.18 5.04 -4.04 -0.02 1.16 16 4 C 0.09 1.50 3.27 -26.73 -0.09 1.42 16 5 H 0.10 2.10 8.14 -51.93 -0.42 1.67 16 6 O -0.55 -9.29 12.10 -35.23 -0.43 -9.71 16 7 C 0.13 2.63 5.90 -4.05 -0.02 2.61 16 8 N -0.73 -19.43 5.55 -59.91 -0.33 -19.76 16 9 C -0.24 -7.09 9.99 -15.06 -0.15 -7.25 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 13 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.52 7.21 6.50 -10.98 -0.07 7.14 16 18 O -0.54 -9.68 15.52 5.55 0.09 -9.59 16 19 C -0.11 -1.14 2.43 -90.66 -0.22 -1.36 16 20 C -0.11 -1.10 6.20 -25.03 -0.16 -1.26 16 21 C -0.12 -1.01 6.91 -24.70 -0.17 -1.18 16 22 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 23 C -0.11 -1.10 6.31 -25.61 -0.16 -1.26 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.54 6.68 -51.93 -0.35 0.19 16 26 H 0.08 0.65 7.00 -51.93 -0.36 0.28 16 27 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.09 1.35 7.50 -51.93 -0.39 0.96 16 29 H 0.36 4.79 8.79 45.56 0.40 5.19 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.39 11.22 7.67 -40.82 -0.31 10.91 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.09 0.71 6.66 -51.93 -0.35 0.37 16 35 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 36 H 0.07 0.61 7.98 -51.93 -0.41 0.20 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.95 6.95 -51.93 -0.36 0.59 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -35.13 338.60 -7.46 -42.59 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.31 Total: 10.50 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.77 Total: -0.48 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.12 Total: -56.38 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.34 Total: -19.30 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.13 -7.46 -42.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725688010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.185 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds