Wall clock time and date at job start Mon Mar 30 2020 01:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00057 * 2 1 4 4 C 1.52994 * 109.47098 * 90.00228 * 3 2 1 5 5 H 1.09000 * 109.47452 * 59.99727 * 4 3 2 6 6 O 1.42908 * 109.47082 * 299.99814 * 4 3 2 7 7 C 1.53003 * 109.47385 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47345 * 184.99637 * 7 4 3 9 9 C 1.36936 * 120.00124 * 180.02562 * 8 7 4 10 10 H 1.08001 * 119.99971 * 359.72827 * 9 8 7 11 11 C 1.38815 * 120.00465 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99755 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00252 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47268 * 60.00330 * 13 11 9 15 15 H 1.48506 * 109.47061 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47024 * 299.99914 * 13 11 9 17 17 C 1.34782 * 119.99975 * 180.02562 * 2 1 3 18 18 O 1.21288 * 119.99770 * 185.05078 * 17 2 1 19 19 C 1.50700 * 119.99930 * 5.04443 * 17 2 1 20 20 C 1.54269 * 110.03192 * 262.27769 * 19 17 2 21 21 C 1.54962 * 104.15787 * 217.13833 * 20 19 17 22 22 C 1.54888 * 102.78083 * 37.88832 * 21 20 19 23 23 C 1.53868 * 110.03097 * 145.05992 * 19 17 2 24 24 H 1.09000 * 109.47042 * 95.22191 * 1 2 3 25 25 H 1.09000 * 109.47256 * 215.22047 * 1 2 3 26 26 H 1.09003 * 109.47257 * 335.22208 * 1 2 3 27 27 H 1.09000 * 109.47192 * 329.99796 * 3 2 1 28 28 H 1.09007 * 109.47250 * 210.00053 * 3 2 1 29 29 H 0.96702 * 113.99909 * 299.99960 * 6 4 3 30 30 H 1.09007 * 109.46654 * 64.99828 * 7 4 3 31 31 H 1.08993 * 109.47030 * 305.00230 * 7 4 3 32 32 H 0.97001 * 120.00385 * 359.97438 * 8 7 4 33 33 H 0.96999 * 120.00096 * 179.97438 * 12 11 9 34 34 H 1.08997 * 110.01854 * 23.66289 * 19 17 2 35 35 H 1.09003 * 110.48518 * 335.78051 * 20 19 17 36 36 H 1.08994 * 110.49031 * 98.42223 * 20 19 17 37 37 H 1.08997 * 110.72104 * 279.56849 * 21 20 19 38 38 H 1.09007 * 110.92297 * 156.29351 * 21 20 19 39 39 H 1.08993 * 110.48773 * 203.40779 * 22 21 20 40 40 H 1.09000 * 110.60076 * 80.81679 * 22 21 20 41 41 H 1.08996 * 110.03372 * 238.56987 * 23 19 17 42 42 H 1.08999 * 110.03281 * 359.94997 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4424 5 1 3.0416 0.9507 1.9563 6 8 1.2038 1.8813 2.1161 7 6 3.2181 3.0351 1.4425 8 7 3.5664 3.3977 2.8184 9 6 4.2585 4.5527 3.0678 10 1 4.5513 5.1941 2.2497 11 6 4.5891 4.8962 4.3715 12 7 4.2377 4.1113 5.3680 13 14 5.5337 6.4714 4.7115 14 1 4.7501 7.6340 4.2221 15 1 5.7608 6.6068 6.1729 16 1 6.8418 6.4254 4.0100 17 6 2.1389 -1.1672 -0.0005 18 8 3.3482 -1.1693 0.0920 19 6 1.3897 -2.4698 -0.1159 20 6 1.1860 -3.0878 1.2828 21 6 1.3461 -4.6116 1.0508 22 6 2.4852 -4.6810 0.0037 23 6 2.2150 -3.4822 -0.9291 24 1 -0.3633 -0.0935 -1.0234 25 1 -0.3634 -0.8395 0.5927 26 1 -0.3634 0.9331 0.4307 27 1 1.6084 2.0284 -0.5139 28 1 3.1499 1.1384 -0.5139 29 1 0.6267 2.5440 1.7126 30 1 2.5935 3.8157 1.0081 31 1 4.1287 2.9284 0.8532 32 1 3.3063 2.8201 3.5530 33 1 4.4690 4.3511 6.2790 34 1 0.4248 -2.3040 -0.5949 35 1 1.9466 -2.7255 1.9745 36 1 0.1883 -2.8610 1.6586 37 1 0.4269 -5.0395 0.6507 38 1 1.6368 -5.1172 1.9718 39 1 2.4350 -5.6165 -0.5532 40 1 3.4569 -4.5772 0.4865 41 1 1.6504 -3.8085 -1.8024 42 1 3.1570 -3.0312 -1.2411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725688010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:31 Heat of formation + Delta-G solvation = -113.377200 kcal Electronic energy + Delta-G solvation = -21322.167989 eV Core-core repulsion = 18107.810515 eV Total energy + Delta-G solvation = -3214.357473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40083 -39.16452 -37.86261 -36.41808 -35.81184 -33.28721 -31.51305 -29.88517 -29.63646 -27.86639 -26.75245 -24.74176 -22.86656 -22.08838 -21.58343 -19.73154 -19.26736 -18.53519 -17.71833 -17.11788 -16.71136 -16.51049 -16.24364 -16.00276 -15.55927 -15.25940 -14.85163 -14.41243 -14.37196 -14.16129 -13.79219 -13.65058 -13.25060 -13.01826 -12.81167 -12.73557 -12.57560 -12.26426 -12.22212 -12.09905 -12.02043 -11.92759 -11.84888 -11.70117 -11.42357 -11.23758 -10.99639 -10.69429 -9.54755 -9.05383 -7.96941 -5.27954 1.44604 1.49279 1.55333 1.57518 2.01628 2.53978 3.33640 3.43857 3.46681 3.65572 3.67457 3.77150 3.96849 4.14515 4.20037 4.35139 4.43387 4.46086 4.50466 4.52699 4.55523 4.63616 4.65832 4.78162 4.80158 4.87886 4.93130 5.00707 5.04669 5.17102 5.21703 5.22364 5.32254 5.43460 5.46327 5.54685 6.23103 6.39872 6.87032 7.17808 7.29101 8.04378 8.27820 9.26463 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030849 B = 0.003582 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.430148 B = 7815.806357 C = 8069.939414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.096 3.904 4 C 0.105 3.895 5 H 0.057 0.943 6 O -0.560 6.560 7 C 0.124 3.876 8 N -0.743 5.743 9 C -0.253 4.253 10 H 0.079 0.921 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.981 3.019 14 H -0.272 1.272 15 H -0.295 1.295 16 H -0.278 1.278 17 C 0.505 3.495 18 O -0.590 6.590 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.113 4.113 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.384 0.616 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.372 0.628 33 H 0.252 0.748 34 H 0.125 0.875 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 -15.480 -16.120 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.338 5.338 3 C -0.028 4.028 4 C 0.044 3.956 5 H 0.075 0.925 6 O -0.367 6.367 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.384 4.384 10 H 0.097 0.903 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.808 3.192 14 H -0.198 1.198 15 H -0.221 1.221 16 H -0.204 1.204 17 C 0.295 3.705 18 O -0.471 6.471 19 C -0.126 4.126 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.163 4.163 23 C -0.151 4.151 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.093 0.907 29 H 0.233 0.767 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.204 0.796 33 H 0.060 0.940 34 H 0.143 0.857 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.818 -15.764 -15.763 25.715 hybrid contribution 0.798 1.263 0.611 1.614 sum -12.019 -14.501 -15.152 24.173 Atomic orbital electron populations 1.22098 0.76675 1.04819 1.03140 1.47893 1.08715 1.04843 1.72353 1.22014 0.98842 0.86468 0.95499 1.22151 0.84916 0.95263 0.93229 0.92483 1.86599 1.28675 1.63458 1.57966 1.21444 0.97009 0.95019 0.86830 1.42474 1.67265 1.25484 1.03301 1.19663 1.27041 0.99121 0.92585 0.90323 1.25696 1.03244 1.02600 0.95497 1.69861 1.53261 1.40230 0.98796 0.85116 0.78565 0.79168 0.76307 1.19818 1.22072 1.20411 1.21463 0.87623 0.86788 0.74646 1.90682 1.16876 1.87914 1.51624 1.22067 1.00606 0.90804 0.99169 1.22338 1.02128 0.96691 0.93918 1.22507 0.99428 0.94198 0.99153 1.22366 0.98382 0.98308 0.97222 1.22129 0.99453 0.94854 0.98620 0.90043 0.90266 0.89579 0.86404 0.90741 0.76744 0.93926 0.95938 0.79600 0.93963 0.85736 0.94550 0.88982 0.88688 0.91227 0.89505 0.93734 0.88750 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 9.26 127.77 1.18 2.21 16 2 N -0.61 -14.25 2.80 -846.75 -2.37 -16.62 16 3 C 0.10 2.52 5.04 86.38 0.44 2.96 16 4 C 0.11 3.70 3.27 30.59 0.10 3.80 16 5 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 6 O -0.56 -18.49 12.10 -148.98 -1.80 -20.29 16 7 C 0.12 5.14 5.90 86.38 0.51 5.65 16 8 N -0.74 -40.51 5.55 -343.46 -1.91 -42.41 16 9 C -0.25 -14.78 9.99 84.03 0.84 -13.95 16 10 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 11 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 12 N -0.97 -62.55 13.06 21.65 0.28 -62.26 16 13 Si 0.98 47.54 29.55 68.60 2.03 49.57 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 C 0.51 14.15 6.50 87.66 0.57 14.72 16 18 O -0.59 -22.73 15.52 -3.05 -0.05 -22.78 16 19 C -0.11 -2.00 2.43 -10.82 -0.03 -2.02 16 20 C -0.11 -2.14 6.20 31.70 0.20 -1.94 16 21 C -0.12 -1.70 6.91 31.91 0.22 -1.48 16 22 C -0.13 -2.15 6.83 31.67 0.22 -1.93 16 23 C -0.11 -2.09 6.31 31.32 0.20 -1.90 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.95 6.68 -2.39 -0.02 0.94 16 26 H 0.09 1.10 7.00 -2.39 -0.02 1.08 16 27 H 0.12 2.20 8.07 -2.39 -0.02 2.18 16 28 H 0.07 2.24 7.50 -2.38 -0.02 2.22 16 29 H 0.38 9.23 8.79 -74.06 -0.65 8.58 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.37 22.31 7.67 -92.71 -0.71 21.60 16 33 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.12 1.48 6.66 -2.39 -0.02 1.47 16 35 H 0.04 0.96 7.85 -2.39 -0.02 0.94 16 36 H 0.09 1.35 7.98 -2.39 -0.02 1.33 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.20 6.95 -2.39 -0.02 1.19 16 Total: -1.00 -79.83 338.60 0.75 -79.08 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.35 Total: 33.81 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.91 Total: 1.90 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -3.99 Total: -121.30 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.85 Total: -43.07 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -79.83 0.75 -79.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725688010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.295 kcal (2) G-P(sol) polarization free energy of solvation -79.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds