Wall clock time and date at job start Mon Mar 30 2020 01:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46799 * 2 1 4 4 C 1.42903 * 113.99776 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.46697 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00607 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99813 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99988 * 0.02562 * 7 5 4 9 9 C 1.46496 * 120.00035 * 179.97438 * 7 5 4 10 10 C 1.53044 * 109.46000 * 120.00229 * 9 7 5 11 11 C 1.53190 * 109.31538 * 181.38470 * 10 9 7 12 12 N 1.46928 * 108.89085 * 305.29623 * 11 10 9 13 13 C 1.36941 * 120.62869 * 233.67699 * 12 11 10 14 14 H 1.08010 * 119.99649 * 27.39101 * 13 12 11 15 15 C 1.38804 * 120.00378 * 207.38960 * 13 12 11 16 16 N 1.31624 * 120.00025 * 17.26718 * 15 13 12 17 17 Si 1.86801 * 120.00311 * 197.26803 * 15 13 12 18 18 H 1.48490 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46826 * 120.00101 * 17 15 13 20 20 H 1.48498 * 109.47107 * 239.99663 * 17 15 13 21 21 C 1.47201 * 118.56064 * 53.53885 * 12 11 10 22 22 C 1.53045 * 109.46218 * 240.06872 * 9 7 5 23 23 H 1.08997 * 109.46874 * 59.99975 * 1 2 3 24 24 H 1.09002 * 109.46518 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47152 * 299.99697 * 1 2 3 26 26 H 1.08999 * 109.47409 * 240.00054 * 2 1 3 27 27 H 1.08997 * 109.46874 * 120.00025 * 2 1 3 28 28 H 1.08995 * 109.47096 * 60.00288 * 4 3 2 29 29 H 1.08999 * 109.47202 * 300.00350 * 4 3 2 30 30 H 1.08996 * 109.46752 * 269.99797 * 8 7 5 31 31 H 1.08997 * 109.47065 * 29.99820 * 8 7 5 32 32 H 1.08997 * 109.47205 * 149.99743 * 8 7 5 33 33 H 1.08996 * 109.45039 * 0.03623 * 9 7 5 34 34 H 1.09007 * 109.49718 * 61.43555 * 10 9 7 35 35 H 1.09003 * 109.52559 * 301.35479 * 10 9 7 36 36 H 1.08998 * 109.58570 * 65.15218 * 11 10 9 37 37 H 1.09000 * 109.58672 * 185.43476 * 11 10 9 38 38 H 0.96996 * 120.00327 * 179.97438 * 16 15 13 39 39 H 1.08993 * 109.53783 * 186.67345 * 21 12 11 40 40 H 1.09001 * 109.67476 * 66.36192 * 21 12 11 41 41 H 1.09000 * 109.49621 * 298.56628 * 22 9 7 42 42 H 1.09003 * 109.49716 * 58.62995 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8193 2.9163 0.0012 6 8 2.9609 3.7730 0.0016 7 7 5.1208 3.2665 0.0023 8 6 6.1579 2.2316 0.0024 9 6 5.4985 4.6819 0.0023 10 6 6.3260 4.9888 1.2526 11 6 6.6897 6.4769 1.2669 12 7 7.3612 6.8145 0.0044 13 6 8.5858 7.4275 0.0077 14 1 9.2599 7.2828 0.8391 15 6 8.9607 8.2348 -1.0573 16 7 8.0495 8.6889 -1.8917 17 14 10.7584 8.6770 -1.3067 18 1 11.5760 8.0458 -0.2399 19 1 11.2097 8.1853 -2.6333 20 1 10.9185 10.1521 -1.2449 21 6 6.6906 6.4767 -1.2617 22 6 6.3268 4.9887 -1.2475 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9766 -0.8891 29 1 3.8333 0.9768 0.8908 30 1 6.4143 1.9744 1.0301 31 1 5.7868 1.3453 -0.5122 32 1 7.0440 2.6052 -0.5106 33 1 4.5991 5.2975 0.0019 34 1 7.2377 4.3915 1.2412 35 1 5.7444 4.7480 2.1426 36 1 5.7834 7.0736 1.3696 37 1 7.3587 6.6815 2.1027 38 1 8.3114 9.2533 -2.6357 39 1 7.3621 6.6808 -2.0956 40 1 5.7845 7.0733 -1.3676 41 1 7.2385 4.3914 -1.2354 42 1 5.7455 4.7472 -2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731344476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:20 Heat of formation + Delta-G solvation = -58.523045 kcal Electronic energy + Delta-G solvation = -21461.636850 eV Core-core repulsion = 18249.658031 eV Total energy + Delta-G solvation = -3211.978819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01937 -38.11933 -37.07987 -35.08113 -32.59377 -31.68734 -30.31546 -29.68486 -27.63248 -26.87226 -24.79510 -23.03673 -22.19182 -21.99799 -19.44816 -18.83729 -17.33479 -16.92796 -16.63962 -16.27962 -15.76578 -15.15196 -14.79329 -14.20923 -13.72188 -13.64687 -13.57687 -13.05198 -12.88915 -12.75343 -12.68892 -12.53076 -12.37913 -12.21381 -11.62815 -11.47630 -11.44777 -11.12439 -10.80513 -10.73441 -10.34087 -10.19326 -10.08253 -9.90596 -9.74916 -9.66361 -9.41364 -8.54925 -8.30559 -6.69574 -5.79145 -3.21156 2.72093 2.77814 3.36586 3.44498 3.46596 3.76555 4.49050 4.54307 4.75788 4.82800 4.97389 5.01311 5.07864 5.14610 5.31173 5.37388 5.39640 5.42923 5.50483 5.64402 5.65802 5.68954 5.87188 5.88519 6.08053 6.21805 6.33800 6.49308 6.56262 6.63043 6.77380 6.78766 6.95886 6.99073 7.33834 7.53954 7.66489 7.79226 8.32847 8.43851 9.20017 9.83620 10.40922 11.29783 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047709 B = 0.003560 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.750579 B = 7863.044292 C = 7921.317743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.047 3.953 5 C 0.510 3.490 6 O -0.522 6.522 7 N -0.608 5.608 8 C 0.074 3.926 9 C 0.146 3.854 10 C -0.137 4.137 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.173 3.827 22 C -0.145 4.145 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.254 0.746 39 H 0.091 0.909 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 -18.948 3.317 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.033 4.033 5 C 0.296 3.704 6 O -0.397 6.397 7 N -0.343 5.343 8 C -0.069 4.069 9 C 0.044 3.956 10 C -0.177 4.177 11 C 0.020 3.980 12 N -0.316 5.316 13 C -0.381 4.381 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.046 3.954 22 C -0.185 4.185 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.852 -18.205 3.185 20.080 hybrid contribution 1.219 -0.160 -0.219 1.249 sum -6.633 -18.365 2.965 19.750 Atomic orbital electron populations 1.21728 0.93446 1.02118 1.03537 1.22535 0.95989 0.83569 1.00043 1.88040 1.18775 1.26121 1.95379 1.22257 0.83595 0.95303 1.02117 1.20193 0.82696 0.90291 0.77185 1.90719 1.48946 1.51677 1.48392 1.48110 1.04870 1.08139 1.73163 1.21790 0.92665 0.90712 1.01762 1.21214 0.98924 0.79079 0.96374 1.22362 0.98956 1.00409 0.95985 1.20866 0.95841 0.90931 0.90360 1.44165 1.19577 1.68411 0.99417 1.19220 0.91022 1.21868 1.05989 0.91561 1.25048 0.97702 0.97055 0.99932 1.70042 1.31240 1.35645 1.17712 0.86231 0.85089 0.77789 0.77708 1.20286 1.21588 1.21733 1.20809 0.96510 0.87514 0.90526 1.22563 0.98487 1.02035 0.95437 0.91653 0.91061 0.91672 0.93288 0.93304 0.90506 0.90542 0.92595 0.91748 0.90087 0.88632 0.92091 0.92952 0.96179 0.92467 0.93637 0.89065 0.96073 0.92367 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.36 -4.89 9.88 -55.14 -0.54 -5.44 16 4 C 0.05 0.54 4.97 36.00 0.18 0.72 16 5 C 0.51 8.15 7.75 -10.99 -0.09 8.06 16 6 O -0.52 -10.83 15.83 -14.35 -0.23 -11.06 16 7 N -0.61 -9.05 2.76 -173.89 -0.48 -9.53 16 8 C 0.07 0.78 9.33 59.85 0.56 1.34 16 9 C 0.15 2.63 2.48 -67.89 -0.17 2.46 16 10 C -0.14 -2.42 5.34 -26.61 -0.14 -2.56 16 11 C 0.15 3.12 6.51 -3.71 -0.02 3.10 16 12 N -0.59 -14.83 3.01 -172.10 -0.52 -15.35 16 13 C -0.25 -6.84 9.59 -15.06 -0.14 -6.99 16 14 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 16 N -0.90 -26.22 11.18 55.49 0.62 -25.60 16 17 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 C 0.17 4.15 5.33 -3.56 -0.02 4.13 16 22 C -0.15 -2.79 5.31 -26.61 -0.14 -2.93 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.69 7.40 -51.93 -0.38 0.31 16 29 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 6.44 -51.93 -0.33 0.16 16 32 H 0.08 0.91 6.46 -51.93 -0.34 0.57 16 33 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 34 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -33.14 333.37 -7.68 -40.83 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -7.09 Total: -2.55 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 0.56 Total: 7.19 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.38 Total: -50.48 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.77 Total: -16.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.14 -7.68 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731344476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.695 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds