Wall clock time and date at job start Mon Mar 30 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46799 * 2 1 4 4 C 1.42903 * 113.99776 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.46697 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00607 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99813 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99988 * 0.02562 * 7 5 4 9 9 C 1.46496 * 120.00035 * 179.97438 * 7 5 4 10 10 C 1.53044 * 109.46000 * 120.00229 * 9 7 5 11 11 C 1.53190 * 109.31538 * 181.38470 * 10 9 7 12 12 N 1.46928 * 108.89085 * 305.29623 * 11 10 9 13 13 C 1.36941 * 120.62869 * 233.67699 * 12 11 10 14 14 H 1.08010 * 119.99649 * 27.39101 * 13 12 11 15 15 C 1.38804 * 120.00378 * 207.38960 * 13 12 11 16 16 N 1.31624 * 120.00025 * 17.26718 * 15 13 12 17 17 Si 1.86801 * 120.00311 * 197.26803 * 15 13 12 18 18 H 1.48490 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46826 * 120.00101 * 17 15 13 20 20 H 1.48498 * 109.47107 * 239.99663 * 17 15 13 21 21 C 1.47201 * 118.56064 * 53.53885 * 12 11 10 22 22 C 1.53045 * 109.46218 * 240.06872 * 9 7 5 23 23 H 1.08997 * 109.46874 * 59.99975 * 1 2 3 24 24 H 1.09002 * 109.46518 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47152 * 299.99697 * 1 2 3 26 26 H 1.08999 * 109.47409 * 240.00054 * 2 1 3 27 27 H 1.08997 * 109.46874 * 120.00025 * 2 1 3 28 28 H 1.08995 * 109.47096 * 60.00288 * 4 3 2 29 29 H 1.08999 * 109.47202 * 300.00350 * 4 3 2 30 30 H 1.08996 * 109.46752 * 269.99797 * 8 7 5 31 31 H 1.08997 * 109.47065 * 29.99820 * 8 7 5 32 32 H 1.08997 * 109.47205 * 149.99743 * 8 7 5 33 33 H 1.08996 * 109.45039 * 0.03623 * 9 7 5 34 34 H 1.09007 * 109.49718 * 61.43555 * 10 9 7 35 35 H 1.09003 * 109.52559 * 301.35479 * 10 9 7 36 36 H 1.08998 * 109.58570 * 65.15218 * 11 10 9 37 37 H 1.09000 * 109.58672 * 185.43476 * 11 10 9 38 38 H 0.96996 * 120.00327 * 179.97438 * 16 15 13 39 39 H 1.08993 * 109.53783 * 186.67345 * 21 12 11 40 40 H 1.09001 * 109.67476 * 66.36192 * 21 12 11 41 41 H 1.09000 * 109.49621 * 298.56628 * 22 9 7 42 42 H 1.09003 * 109.49716 * 58.62995 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8193 2.9163 0.0012 6 8 2.9609 3.7730 0.0016 7 7 5.1208 3.2665 0.0023 8 6 6.1579 2.2316 0.0024 9 6 5.4985 4.6819 0.0023 10 6 6.3260 4.9888 1.2526 11 6 6.6897 6.4769 1.2669 12 7 7.3612 6.8145 0.0044 13 6 8.5858 7.4275 0.0077 14 1 9.2599 7.2828 0.8391 15 6 8.9607 8.2348 -1.0573 16 7 8.0495 8.6889 -1.8917 17 14 10.7584 8.6770 -1.3067 18 1 11.5760 8.0458 -0.2399 19 1 11.2097 8.1853 -2.6333 20 1 10.9185 10.1521 -1.2449 21 6 6.6906 6.4767 -1.2617 22 6 6.3268 4.9887 -1.2475 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9766 -0.8891 29 1 3.8333 0.9768 0.8908 30 1 6.4143 1.9744 1.0301 31 1 5.7868 1.3453 -0.5122 32 1 7.0440 2.6052 -0.5106 33 1 4.5991 5.2975 0.0019 34 1 7.2377 4.3915 1.2412 35 1 5.7444 4.7480 2.1426 36 1 5.7834 7.0736 1.3696 37 1 7.3587 6.6815 2.1027 38 1 8.3114 9.2533 -2.6357 39 1 7.3621 6.6808 -2.0956 40 1 5.7845 7.0733 -1.3676 41 1 7.2385 4.3914 -1.2354 42 1 5.7455 4.7472 -2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731344476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:19 Heat of formation + Delta-G solvation = -79.935956 kcal Electronic energy + Delta-G solvation = -21462.565383 eV Core-core repulsion = 18249.658031 eV Total energy + Delta-G solvation = -3212.907352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25250 -39.31158 -38.38780 -36.56308 -34.34924 -32.54430 -31.93008 -31.41684 -28.73357 -27.92652 -26.57564 -23.91130 -23.75002 -23.59012 -20.97818 -20.19457 -18.76958 -18.33664 -17.50726 -17.46007 -17.02450 -16.66713 -16.09802 -15.72724 -15.39497 -15.04988 -14.80927 -14.59479 -14.14622 -13.98912 -13.83899 -13.75962 -13.31323 -13.17446 -13.09304 -13.02195 -12.63656 -12.50605 -12.31527 -12.15681 -12.07931 -11.95472 -11.90740 -11.48119 -11.34565 -10.74611 -10.64318 -10.58606 -9.61937 -8.73863 -7.88182 -5.34031 1.47713 1.49296 1.55113 1.60409 1.72860 2.51575 2.91330 3.27854 3.54890 3.63687 3.89704 4.03725 4.09687 4.17438 4.26124 4.30034 4.35338 4.36986 4.44999 4.52200 4.63511 4.67145 4.73585 4.83212 4.83807 4.97732 5.02939 5.04159 5.04630 5.12843 5.27609 5.28259 5.43723 5.55972 5.62914 5.68098 6.12754 6.37277 6.44824 7.12106 7.15537 7.82076 8.36103 9.19507 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047709 B = 0.003560 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.750579 B = 7863.044292 C = 7921.317743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.055 3.945 5 C 0.500 3.500 6 O -0.584 6.584 7 N -0.604 5.604 8 C 0.065 3.935 9 C 0.153 3.847 10 C -0.119 4.119 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.260 4.260 14 H 0.073 0.927 15 C -0.054 4.054 16 N -0.939 5.939 17 Si 0.971 3.029 18 H -0.263 1.263 19 H -0.289 1.289 20 H -0.295 1.295 21 C 0.180 3.820 22 C -0.127 4.127 23 H 0.051 0.949 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.004 0.996 37 H 0.065 0.935 38 H 0.250 0.750 39 H 0.062 0.938 40 H -0.013 1.013 41 H 0.074 0.926 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 -22.378 4.209 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.326 6.326 4 C -0.024 4.024 5 C 0.289 3.711 6 O -0.464 6.464 7 N -0.337 5.337 8 C -0.076 4.076 9 C 0.050 3.950 10 C -0.159 4.159 11 C 0.016 3.984 12 N -0.332 5.332 13 C -0.390 4.390 14 H 0.091 0.909 15 C -0.249 4.249 16 N -0.585 5.585 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.223 1.223 21 C 0.054 3.946 22 C -0.166 4.166 23 H 0.070 0.930 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.022 0.978 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.005 0.995 41 H 0.092 0.908 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.547 -21.700 4.105 23.035 hybrid contribution 0.757 0.905 -0.461 1.267 sum -5.790 -20.796 3.644 21.892 Atomic orbital electron populations 1.21789 0.93474 1.03491 1.02273 1.22793 0.96098 0.81893 1.01897 1.88001 1.19878 1.28973 1.95787 1.22329 0.83287 0.91656 1.05153 1.21164 0.82139 0.92100 0.75665 1.90694 1.50662 1.53788 1.51243 1.48065 1.05897 1.07371 1.72409 1.22149 0.91239 0.90469 1.03744 1.20789 0.97090 0.81294 0.95867 1.22138 0.99721 0.97582 0.96438 1.21010 0.95009 0.93319 0.89074 1.44416 1.19494 1.68593 1.00729 1.19591 0.91934 1.21411 1.06030 0.90919 1.25865 1.01671 0.97432 0.99939 1.70215 1.33249 1.36733 1.18330 0.85157 0.80270 0.76958 0.77741 1.18662 1.21594 1.22269 1.20565 0.94160 0.90321 0.89586 1.22278 0.99410 0.98437 0.96521 0.93004 0.88335 0.92887 0.91406 0.91259 0.87283 0.87080 0.90388 0.88088 0.90580 0.92262 0.90433 0.91127 0.97820 0.91666 0.94113 0.91995 0.99528 0.90787 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -10.13 9.88 -129.94 -1.28 -11.42 16 4 C 0.05 1.06 4.97 71.23 0.35 1.42 16 5 C 0.50 15.24 7.75 87.65 0.68 15.92 16 6 O -0.58 -24.78 15.83 16.00 0.25 -24.53 16 7 N -0.60 -16.62 2.76 -822.44 -2.27 -18.90 16 8 C 0.07 1.09 9.33 127.77 1.19 2.28 16 9 C 0.15 5.46 2.48 45.02 0.11 5.58 16 10 C -0.12 -4.02 5.34 30.67 0.16 -3.86 16 11 C 0.14 6.04 6.51 86.36 0.56 6.60 16 12 N -0.61 -30.96 3.01 -698.40 -2.10 -33.06 16 13 C -0.26 -14.20 9.59 84.03 0.81 -13.39 16 14 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 15 C -0.05 -3.02 4.92 84.86 0.42 -2.61 16 16 N -0.94 -56.45 11.18 21.65 0.24 -56.21 16 17 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 21 C 0.18 8.99 5.33 86.31 0.46 9.45 16 22 C -0.13 -4.86 5.31 30.67 0.16 -4.70 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.11 1.41 7.40 -2.39 -0.02 1.40 16 29 H 0.11 1.40 8.11 -2.39 -0.02 1.38 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.98 6.44 -2.39 -0.02 0.96 16 32 H 0.08 1.39 6.46 -2.39 -0.02 1.38 16 33 H 0.06 2.57 6.90 -2.39 -0.02 2.56 16 34 H 0.08 2.40 7.72 -2.38 -0.02 2.38 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.06 2.63 7.93 -2.39 -0.02 2.61 16 38 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.06 3.44 6.04 -2.39 -0.01 3.43 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.07 2.62 6.72 -2.39 -0.02 2.61 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -76.36 333.37 3.98 -72.38 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.98 Total: 8.71 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.13 Total: 16.44 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.13 Total: -108.17 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.03 Total: -35.94 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.36 3.98 -72.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731344476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.559 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds