Wall clock time and date at job start Mon Mar 30 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47211 * 2 1 4 4 C 1.42894 * 114.00137 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47263 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99503 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00081 * 179.72605 * 5 4 3 8 8 C 1.46506 * 119.99968 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46710 * 275.00042 * 8 7 5 10 10 C 1.53004 * 109.46947 * 299.99611 * 9 8 7 11 11 C 1.52998 * 109.47106 * 300.00354 * 10 9 8 12 12 N 1.46506 * 109.47209 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99383 * 84.99952 * 12 11 10 14 14 H 1.07994 * 120.00749 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99528 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99953 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99954 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47079 * 90.00396 * 17 15 13 19 19 H 1.48500 * 109.46997 * 210.00623 * 17 15 13 20 20 H 1.48503 * 109.47279 * 330.00035 * 17 15 13 21 21 C 1.53003 * 109.47003 * 60.00133 * 11 10 9 22 22 C 1.52995 * 109.47011 * 154.99680 * 8 7 5 23 23 H 1.09000 * 109.46869 * 299.99842 * 1 2 3 24 24 H 1.08994 * 109.47566 * 59.99895 * 1 2 3 25 25 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47536 * 240.00504 * 2 1 3 27 27 H 1.08994 * 109.47566 * 120.00105 * 2 1 3 28 28 H 1.09001 * 109.47678 * 60.00187 * 4 3 2 29 29 H 1.08998 * 109.47532 * 300.00132 * 4 3 2 30 30 H 0.96998 * 120.00525 * 359.97438 * 7 5 4 31 31 H 1.08995 * 109.47035 * 34.99295 * 8 7 5 32 32 H 1.08996 * 109.47804 * 59.99502 * 9 8 7 33 33 H 1.09002 * 109.46963 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47198 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.46977 * 60.00390 * 10 9 8 36 36 H 1.09002 * 109.47232 * 299.99881 * 11 10 9 37 37 H 0.96998 * 119.99832 * 265.00239 * 12 11 10 38 38 H 0.97003 * 119.99643 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.47186 * 179.97438 * 21 11 10 40 40 H 1.08992 * 109.47335 * 59.99801 * 21 11 10 41 41 H 1.09002 * 109.46878 * 179.97438 * 22 8 7 42 42 H 1.08998 * 109.47477 * 299.99585 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9163 -0.0012 6 8 2.9609 3.7729 -0.0016 7 7 5.1209 3.2664 0.0038 8 6 5.4986 4.6819 0.0038 9 6 5.5145 5.2054 -1.4338 10 6 6.5282 4.4070 -2.2560 11 6 7.9203 4.5634 -1.6408 12 7 8.8908 3.7985 -2.4278 13 6 9.4630 4.3571 -3.5394 14 1 9.1993 5.3615 -3.8358 15 6 10.3830 3.6325 -4.2848 16 7 10.7049 2.4085 -3.9233 17 14 11.1642 4.3946 -5.8008 18 1 12.4102 5.1029 -5.4125 19 1 11.4867 3.3269 -6.7812 20 1 10.2166 5.3597 -6.4139 21 6 7.9043 4.0399 -0.2032 22 6 6.8907 4.8382 0.6191 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8333 0.9768 -0.8908 29 1 3.8340 0.9765 0.8891 30 1 5.8075 2.5813 0.0081 31 1 4.7765 5.2506 0.5895 32 1 4.5229 5.0940 -1.8721 33 1 5.7952 6.2587 -1.4338 34 1 6.5399 4.7802 -3.2801 35 1 6.2472 3.3539 -2.2560 36 1 8.2013 5.6166 -1.6408 37 1 9.1279 2.8965 -2.1614 38 1 11.3475 1.9020 -4.4444 39 1 8.8961 4.1509 0.2350 40 1 7.6232 2.9868 -0.2032 41 1 7.1719 5.8913 0.6186 42 1 6.8793 4.4653 1.6432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731566696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:13 Heat of formation + Delta-G solvation = -88.322270 kcal Electronic energy + Delta-G solvation = -21143.852047 eV Core-core repulsion = 17930.581037 eV Total energy + Delta-G solvation = -3213.271010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13500 -38.42545 -37.35025 -34.63386 -32.80751 -31.75383 -30.77096 -30.44347 -28.28316 -26.87497 -23.66525 -23.02363 -22.24049 -21.29743 -20.77808 -18.87074 -17.39419 -17.17171 -16.81682 -16.59698 -15.42307 -15.31866 -14.94640 -14.52405 -14.18584 -13.74048 -13.59963 -13.29213 -12.97824 -12.91253 -12.68439 -12.37869 -12.22057 -11.87098 -11.66860 -11.60009 -11.46727 -11.02197 -10.88268 -10.81382 -10.40624 -10.18526 -10.13527 -9.90843 -9.73322 -9.69619 -9.58037 -8.94858 -8.82285 -6.96302 -5.78224 -3.06321 2.65489 2.79057 3.42441 3.48117 3.49323 3.87796 4.57438 4.67008 4.77504 4.89067 4.98133 5.01671 5.04725 5.10283 5.10915 5.13176 5.40616 5.49809 5.56973 5.65346 5.69327 5.74409 5.87179 5.87379 5.92707 6.01596 6.08171 6.26442 6.35300 6.49695 6.51859 6.64239 6.75145 6.86315 6.97834 7.12689 7.56585 7.69702 8.28066 8.40931 9.52009 10.10076 10.44478 11.44578 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023077 B = 0.003739 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.011955 B = 7487.764192 C = 8113.746317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.043 3.957 5 C 0.514 3.486 6 O -0.526 6.526 7 N -0.716 5.716 8 C 0.150 3.850 9 C -0.129 4.129 10 C -0.132 4.132 11 C 0.177 3.823 12 N -0.726 5.726 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.125 4.125 22 C -0.122 4.122 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.401 0.599 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.382 0.618 38 H 0.254 0.746 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 -3.318 11.163 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.283 6.283 4 C -0.037 4.037 5 C 0.299 3.701 6 O -0.402 6.402 7 N -0.371 5.371 8 C 0.046 3.954 9 C -0.169 4.169 10 C -0.172 4.172 11 C 0.067 3.933 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.163 4.163 22 C -0.160 4.160 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.237 0.763 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.216 0.784 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.744 -2.428 11.012 18.562 hybrid contribution 1.120 -0.631 -0.915 1.578 sum -13.624 -3.058 10.096 17.231 Atomic orbital electron populations 1.21725 0.93470 1.02173 1.03419 1.22548 0.95923 0.83469 1.00259 1.88012 1.18614 1.26267 1.95449 1.22219 0.83842 0.95006 1.02680 1.20178 0.82909 0.90375 0.76649 1.90708 1.49431 1.51728 1.48286 1.46029 1.06637 1.09190 1.75217 1.20972 0.96257 0.80889 0.97276 1.21936 0.99977 1.00070 0.94869 1.22211 0.96213 0.99332 0.99453 1.20234 0.88744 0.95591 0.88685 1.42424 1.48025 1.16350 1.29781 1.19246 1.17618 0.98092 1.01759 0.91235 1.24729 1.00311 0.96423 0.99598 1.69657 1.37364 1.10155 1.41142 0.86212 0.79345 0.77933 0.82861 1.21761 1.21828 1.20782 1.21816 0.98676 0.98967 0.96845 1.21798 0.93595 1.01906 0.98745 0.91772 0.91667 0.91017 0.93079 0.93237 0.90089 0.90399 0.76287 0.89920 0.92261 0.91373 0.92150 0.92884 0.93528 0.78434 0.93583 0.91453 0.92668 0.90319 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.80 16 2 C 0.05 0.49 6.66 37.16 0.25 0.74 16 3 O -0.37 -4.70 9.88 -55.14 -0.54 -5.24 16 4 C 0.04 0.46 6.42 36.01 0.23 0.69 16 5 C 0.51 7.18 7.87 -10.98 -0.09 7.10 16 6 O -0.53 -9.56 16.16 -14.36 -0.23 -9.80 16 7 N -0.72 -8.85 4.23 -53.80 -0.23 -9.08 16 8 C 0.15 1.96 2.79 -67.93 -0.19 1.77 16 9 C -0.13 -1.92 5.60 -26.73 -0.15 -2.07 16 10 C -0.13 -2.31 5.34 -26.73 -0.14 -2.45 16 11 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 12 N -0.73 -17.52 5.12 -53.42 -0.27 -17.79 16 13 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 17 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.12 -1.83 5.22 -26.73 -0.14 -1.97 16 22 C -0.12 -1.45 5.61 -26.74 -0.15 -1.60 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 4.30 6.87 -40.82 -0.28 4.02 16 31 H 0.08 1.13 7.57 -51.93 -0.39 0.73 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.94 7.60 -51.93 -0.39 0.55 16 36 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.77 6.50 -51.93 -0.34 0.43 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -33.08 339.72 -8.07 -41.16 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.19 Total: 8.02 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.43 Total: -2.57 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.22 Total: -53.93 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.78 Total: -15.04 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.08 -8.07 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731566696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.164 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds