Wall clock time and date at job start Mon Mar 30 2020 01:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47211 * 2 1 4 4 C 1.42894 * 114.00137 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47263 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99503 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00081 * 179.72605 * 5 4 3 8 8 C 1.46506 * 119.99968 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46710 * 275.00042 * 8 7 5 10 10 C 1.53004 * 109.46947 * 299.99611 * 9 8 7 11 11 C 1.52998 * 109.47106 * 300.00354 * 10 9 8 12 12 N 1.46506 * 109.47209 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99383 * 84.99952 * 12 11 10 14 14 H 1.07994 * 120.00749 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99528 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99953 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99954 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47079 * 90.00396 * 17 15 13 19 19 H 1.48500 * 109.46997 * 210.00623 * 17 15 13 20 20 H 1.48503 * 109.47279 * 330.00035 * 17 15 13 21 21 C 1.53003 * 109.47003 * 60.00133 * 11 10 9 22 22 C 1.52995 * 109.47011 * 154.99680 * 8 7 5 23 23 H 1.09000 * 109.46869 * 299.99842 * 1 2 3 24 24 H 1.08994 * 109.47566 * 59.99895 * 1 2 3 25 25 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47536 * 240.00504 * 2 1 3 27 27 H 1.08994 * 109.47566 * 120.00105 * 2 1 3 28 28 H 1.09001 * 109.47678 * 60.00187 * 4 3 2 29 29 H 1.08998 * 109.47532 * 300.00132 * 4 3 2 30 30 H 0.96998 * 120.00525 * 359.97438 * 7 5 4 31 31 H 1.08995 * 109.47035 * 34.99295 * 8 7 5 32 32 H 1.08996 * 109.47804 * 59.99502 * 9 8 7 33 33 H 1.09002 * 109.46963 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47198 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.46977 * 60.00390 * 10 9 8 36 36 H 1.09002 * 109.47232 * 299.99881 * 11 10 9 37 37 H 0.96998 * 119.99832 * 265.00239 * 12 11 10 38 38 H 0.97003 * 119.99643 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.47186 * 179.97438 * 21 11 10 40 40 H 1.08992 * 109.47335 * 59.99801 * 21 11 10 41 41 H 1.09002 * 109.46878 * 179.97438 * 22 8 7 42 42 H 1.08998 * 109.47477 * 299.99585 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9163 -0.0012 6 8 2.9609 3.7729 -0.0016 7 7 5.1209 3.2664 0.0038 8 6 5.4986 4.6819 0.0038 9 6 5.5145 5.2054 -1.4338 10 6 6.5282 4.4070 -2.2560 11 6 7.9203 4.5634 -1.6408 12 7 8.8908 3.7985 -2.4278 13 6 9.4630 4.3571 -3.5394 14 1 9.1993 5.3615 -3.8358 15 6 10.3830 3.6325 -4.2848 16 7 10.7049 2.4085 -3.9233 17 14 11.1642 4.3946 -5.8008 18 1 12.4102 5.1029 -5.4125 19 1 11.4867 3.3269 -6.7812 20 1 10.2166 5.3597 -6.4139 21 6 7.9043 4.0399 -0.2032 22 6 6.8907 4.8382 0.6191 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8333 0.9768 -0.8908 29 1 3.8340 0.9765 0.8891 30 1 5.8075 2.5813 0.0081 31 1 4.7765 5.2506 0.5895 32 1 4.5229 5.0940 -1.8721 33 1 5.7952 6.2587 -1.4338 34 1 6.5399 4.7802 -3.2801 35 1 6.2472 3.3539 -2.2560 36 1 8.2013 5.6166 -1.6408 37 1 9.1279 2.8965 -2.1614 38 1 11.3475 1.9020 -4.4444 39 1 8.8961 4.1509 0.2350 40 1 7.6232 2.9868 -0.2032 41 1 7.1719 5.8913 0.6186 42 1 6.8793 4.4653 1.6432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731566696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:12 Heat of formation + Delta-G solvation = -110.554211 kcal Electronic energy + Delta-G solvation = -21144.816096 eV Core-core repulsion = 17930.581037 eV Total energy + Delta-G solvation = -3214.235059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25072 -39.51664 -38.39686 -36.25172 -34.33016 -32.72947 -32.17923 -31.68769 -29.65755 -28.00966 -25.57411 -23.68508 -23.49559 -22.55081 -22.03091 -20.18293 -19.08646 -18.35125 -17.77454 -17.40467 -16.94651 -16.44318 -16.21177 -15.81856 -15.49648 -15.19405 -14.95634 -14.77264 -13.97584 -13.89712 -13.83882 -13.59009 -13.24233 -13.08422 -13.07241 -12.83635 -12.78224 -12.32141 -12.17040 -12.15452 -12.01733 -11.99873 -11.68847 -11.30322 -11.09407 -10.84007 -10.80379 -10.66556 -10.01076 -8.96468 -7.93052 -5.19683 1.47484 1.47877 1.56134 1.59826 1.88887 2.56960 3.05787 3.40223 3.72134 3.78607 3.90443 3.91782 4.15949 4.18778 4.30080 4.33415 4.35379 4.36452 4.40301 4.50714 4.61586 4.67586 4.69387 4.82898 4.84614 5.02997 5.03855 5.11112 5.17722 5.26427 5.27319 5.31926 5.49740 5.57786 5.59732 5.66410 6.10909 6.30721 6.58271 7.25313 7.36786 8.14851 8.37343 9.30252 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023077 B = 0.003739 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.011955 B = 7487.764192 C = 8113.746317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.401 6.401 4 C 0.043 3.957 5 C 0.510 3.490 6 O -0.575 6.575 7 N -0.707 5.707 8 C 0.153 3.847 9 C -0.121 4.121 10 C -0.119 4.119 11 C 0.172 3.828 12 N -0.736 5.736 13 C -0.235 4.235 14 H 0.070 0.930 15 C -0.075 4.075 16 N -0.968 5.968 17 Si 0.966 3.034 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.274 1.274 21 C -0.115 4.115 22 C -0.109 4.109 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.412 0.588 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.373 0.627 38 H 0.250 0.750 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 -3.582 12.327 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.320 6.320 4 C -0.036 4.036 5 C 0.296 3.704 6 O -0.454 6.454 7 N -0.361 5.361 8 C 0.048 3.952 9 C -0.160 4.160 10 C -0.160 4.160 11 C 0.064 3.936 12 N -0.376 5.376 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.795 3.205 18 H -0.214 1.214 19 H -0.223 1.223 20 H -0.199 1.199 21 C -0.154 4.154 22 C -0.147 4.147 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.249 0.751 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.976 -2.679 12.195 19.498 hybrid contribution 1.134 -0.530 -1.260 1.776 sum -13.841 -3.209 10.936 17.930 Atomic orbital electron populations 1.21772 0.93139 1.03481 1.02435 1.22787 0.96314 0.82085 1.01660 1.87972 1.19629 1.28664 1.95771 1.22326 0.83468 0.92861 1.04946 1.20807 0.82682 0.91478 0.75398 1.90683 1.50721 1.53311 1.50659 1.45982 1.06629 1.09220 1.74301 1.20922 0.97111 0.81339 0.95804 1.21845 0.98107 1.00366 0.95659 1.22001 0.96367 0.99384 0.98206 1.20466 0.87765 0.94714 0.90618 1.42619 1.48938 1.16345 1.29672 1.19575 1.16846 0.97983 1.02315 0.91195 1.25457 1.01618 0.97079 1.02583 1.69792 1.38337 1.11390 1.42356 0.85249 0.78523 0.77049 0.79637 1.21444 1.22322 1.19891 1.21699 0.99608 0.99892 0.94176 1.21730 0.91401 1.02218 0.99331 0.92468 0.92934 0.88551 0.92076 0.91301 0.88498 0.87118 0.75090 0.89847 0.93622 0.90332 0.95092 0.93273 0.94288 0.79460 0.94137 0.91776 0.91684 0.89309 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -9.86 9.88 -129.94 -1.28 -11.15 16 4 C 0.04 0.86 6.42 71.24 0.46 1.31 16 5 C 0.51 13.58 7.87 87.66 0.69 14.27 16 6 O -0.57 -20.76 16.16 16.00 0.26 -20.50 16 7 N -0.71 -16.03 4.23 -442.53 -1.87 -17.90 16 8 C 0.15 3.67 2.79 44.99 0.13 3.80 16 9 C -0.12 -3.46 5.60 30.60 0.17 -3.29 16 10 C -0.12 -4.14 5.34 30.60 0.16 -3.98 16 11 C 0.17 6.32 2.77 44.99 0.12 6.44 16 12 N -0.74 -35.53 5.12 -322.92 -1.65 -37.19 16 13 C -0.24 -12.84 9.93 84.04 0.83 -12.01 16 14 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 15 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 16 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 17 Si 0.97 45.97 29.55 68.60 2.03 47.99 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.12 -3.15 5.22 30.59 0.16 -2.99 16 22 C -0.11 -2.25 5.61 30.59 0.17 -2.08 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.41 7.71 6.87 -92.71 -0.64 7.07 16 31 H 0.08 2.10 7.57 -2.39 -0.02 2.09 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.72 7.60 -2.39 -0.02 1.71 16 36 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 37 H 0.37 19.13 7.80 -92.71 -0.72 18.41 16 38 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 1.65 6.50 -2.39 -0.02 1.63 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -72.23 339.72 1.99 -70.24 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.36 Total: 28.84 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 4.58 Total: -2.54 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -3.24 Total: -112.88 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.02 Total: -31.65 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.23 1.99 -70.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731566696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.313 kcal (2) G-P(sol) polarization free energy of solvation -72.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds