Wall clock time and date at job start Mon Mar 30 2020 01:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47177 * 2 1 4 4 C 1.42900 * 114.00351 * 175.55230 * 3 2 1 5 5 H 1.09003 * 109.46670 * 23.23232 * 4 3 2 6 6 C 1.50694 * 109.47283 * 143.22996 * 4 3 2 7 7 O 1.21282 * 120.00307 * 5.00137 * 6 4 3 8 8 N 1.34777 * 120.00043 * 184.99866 * 6 4 3 9 9 C 1.46499 * 119.99975 * 180.02562 * 8 6 4 10 10 H 1.09002 * 109.47420 * 324.99746 * 9 8 6 11 11 C 1.52997 * 109.47249 * 85.00035 * 9 8 6 12 12 C 1.53003 * 109.46873 * 205.00106 * 9 8 6 13 13 N 1.46499 * 109.47446 * 55.00289 * 12 9 8 14 14 C 1.36934 * 120.00342 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99650 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00185 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99793 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00083 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47106 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47096 * 120.00341 * 18 16 14 21 21 H 1.48509 * 109.46898 * 239.99818 * 18 16 14 22 22 C 1.52998 * 109.46994 * 263.23200 * 4 3 2 23 23 C 1.53001 * 117.49870 * 11.58461 * 22 4 3 24 24 C 1.53002 * 117.50086 * 302.92480 * 22 4 3 25 25 H 1.09004 * 109.47200 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47381 * 299.99985 * 1 2 3 27 27 H 1.09005 * 109.47108 * 60.00301 * 1 2 3 28 28 H 1.09004 * 109.47096 * 240.00343 * 2 1 3 29 29 H 1.08996 * 109.47107 * 119.99894 * 2 1 3 30 30 H 0.96999 * 120.00138 * 0.02562 * 8 6 4 31 31 H 1.09005 * 109.46823 * 59.99947 * 11 9 8 32 32 H 1.09001 * 109.47179 * 179.97438 * 11 9 8 33 33 H 1.08995 * 109.47543 * 299.99890 * 11 9 8 34 34 H 1.09005 * 109.46998 * 174.99775 * 12 9 8 35 35 H 1.09000 * 109.47026 * 294.99826 * 12 9 8 36 36 H 0.97002 * 119.99797 * 359.97438 * 13 12 9 37 37 H 0.97002 * 119.99742 * 179.97438 * 17 16 14 38 38 H 1.08997 * 115.54794 * 157.25377 * 22 4 3 39 39 H 1.08997 * 117.50123 * 359.97438 * 23 22 4 40 40 H 1.09005 * 117.50010 * 145.02053 * 23 22 4 41 41 H 1.08993 * 117.49806 * 214.98025 * 24 22 4 42 42 H 1.09005 * 117.49226 * 0.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4271 1.4615 0.1012 5 1 3.8915 0.5390 -0.2474 6 6 3.9002 2.6137 -0.7470 7 8 3.0937 3.3281 -1.3038 8 7 5.2196 2.8504 -0.8868 9 6 5.6795 3.9709 -1.7110 10 1 5.0078 4.0971 -2.5601 11 6 5.6880 5.2508 -0.8727 12 6 7.0942 3.6840 -2.2181 13 7 7.1101 2.3979 -2.9195 14 6 8.2761 1.9288 -3.4631 15 1 9.1840 2.5072 -3.3750 16 6 8.2913 0.7100 -4.1272 17 7 7.1850 0.0049 -4.2340 18 14 9.8818 0.0704 -4.8693 19 1 10.9740 1.0433 -4.6131 20 1 10.2270 -1.2348 -4.2507 21 1 9.7089 -0.1063 -6.3337 22 6 3.8162 1.7087 1.5601 23 6 2.7321 1.5172 2.6226 24 6 3.2060 2.9262 2.2575 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8648 2.2789 -0.4418 31 1 6.3598 5.1245 -0.0236 32 1 6.0306 6.0844 -1.4858 33 1 4.6802 5.4552 -0.5114 34 1 7.4022 4.4747 -2.9023 35 1 7.7822 3.6458 -1.3736 36 1 6.2948 1.8783 -2.9982 37 1 7.1955 -0.8467 -4.6984 38 1 4.8368 1.4346 1.8274 39 1 1.7415 1.2155 2.2822 40 1 3.0394 1.1175 3.5890 41 1 3.8250 3.4528 2.9838 42 1 2.5270 3.5508 1.6770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732996678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:54 Heat of formation + Delta-G solvation = -52.620857 kcal Electronic energy + Delta-G solvation = -21552.257323 eV Core-core repulsion = 18340.534443 eV Total energy + Delta-G solvation = -3211.722881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04716 -38.18040 -36.07749 -35.94614 -33.60724 -31.67540 -31.16986 -30.00289 -27.56177 -25.65285 -23.05332 -22.76217 -22.32063 -21.71774 -20.57709 -19.77040 -17.44612 -16.93538 -16.77836 -16.41469 -15.53586 -14.97096 -14.77452 -14.67984 -13.90697 -13.78278 -13.60656 -13.24396 -12.71993 -12.47732 -12.37399 -12.29111 -12.16387 -12.09085 -11.59917 -11.51370 -11.38269 -11.17673 -10.91969 -10.85559 -10.59414 -10.44864 -10.41789 -10.03724 -9.76609 -9.74935 -9.12151 -8.93082 -8.62992 -6.98098 -5.80725 -3.10334 2.96799 3.10509 3.40317 3.46255 3.48438 3.65037 4.10343 4.55314 4.58542 4.82791 4.84047 5.01520 5.10088 5.21880 5.24300 5.34353 5.36891 5.41847 5.52830 5.54673 5.59568 5.63414 5.68790 5.80106 5.86490 6.01315 6.04615 6.10550 6.11856 6.16824 6.20397 6.42635 6.49622 6.71735 6.96595 7.13404 7.66385 7.93353 8.37380 8.62274 9.49254 10.05505 10.40975 11.41828 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.004823 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.360244 B = 5804.376501 C = 6622.623636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.102 3.898 5 H 0.094 0.906 6 C 0.522 3.478 7 O -0.531 6.531 8 N -0.707 5.707 9 C 0.135 3.865 10 H 0.086 0.914 11 C -0.156 4.156 12 C 0.144 3.856 13 N -0.732 5.732 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.179 4.179 23 C -0.167 4.167 24 C -0.165 4.165 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.403 0.597 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 2.326 14.061 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.272 6.272 4 C 0.040 3.960 5 H 0.112 0.888 6 C 0.306 3.694 7 O -0.407 6.407 8 N -0.359 5.359 9 C 0.030 3.970 10 H 0.104 0.896 11 C -0.215 4.215 12 C 0.016 3.984 13 N -0.377 5.377 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.198 4.198 23 C -0.204 4.204 24 C -0.202 4.202 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.237 0.763 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.400 3.001 13.577 16.783 hybrid contribution 1.211 -1.190 -0.295 1.723 sum -8.189 1.811 13.282 15.708 Atomic orbital electron populations 1.21719 0.93648 1.02073 1.03165 1.22638 0.95664 0.83797 1.00468 1.87994 1.18705 1.26212 1.94246 1.21346 0.83564 0.98226 0.92872 0.88849 1.20173 0.82760 0.85374 0.81077 1.90676 1.53865 1.48654 1.47464 1.45866 1.06367 1.32545 1.51122 1.21225 0.97182 0.85232 0.93319 0.89605 1.22091 1.01926 0.97271 1.00230 1.20989 0.91992 0.90268 0.95119 1.42373 1.10377 1.19100 1.65853 1.19277 0.88519 1.01554 1.27916 0.91056 1.24751 0.97129 0.97594 1.01390 1.69682 1.25792 1.14762 1.47794 0.86116 0.82752 0.78526 0.78768 1.20535 1.21886 1.21847 1.22712 0.99093 1.05681 0.92334 1.22943 0.99215 1.00064 0.98135 1.22895 1.03481 0.90945 1.02877 0.91144 0.92049 0.91645 0.92909 0.93070 0.76264 0.92602 0.91749 0.92417 0.94861 0.95765 0.78025 0.93544 0.86512 0.87973 0.88974 0.88919 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.08 16 2 C 0.05 0.60 5.64 37.16 0.21 0.81 16 3 O -0.35 -5.27 8.23 -55.09 -0.45 -5.72 16 4 C 0.10 1.46 2.97 -27.89 -0.08 1.37 16 5 H 0.09 1.28 7.74 -51.93 -0.40 0.87 16 6 C 0.52 9.07 6.87 -10.99 -0.08 8.99 16 7 O -0.53 -11.18 16.17 -14.30 -0.23 -11.41 16 8 N -0.71 -11.58 4.48 -53.81 -0.24 -11.82 16 9 C 0.13 2.32 2.73 -67.93 -0.19 2.13 16 10 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 11 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 12 C 0.14 2.81 5.82 -4.04 -0.02 2.79 16 13 N -0.73 -18.11 5.43 -59.91 -0.33 -18.44 16 14 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 18 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 C -0.18 -2.08 5.77 -90.62 -0.52 -2.60 16 23 C -0.17 -1.71 9.54 -26.69 -0.25 -1.96 16 24 C -0.17 -1.89 9.85 -26.69 -0.26 -2.15 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.51 7.57 -51.93 -0.39 0.12 16 30 H 0.40 6.16 8.60 -40.82 -0.35 5.81 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.39 10.21 7.33 -40.82 -0.30 9.91 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.10 1.10 6.25 -51.93 -0.32 0.77 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -32.48 349.76 -8.20 -40.67 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.21 Total: 12.29 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.71 Total: -0.78 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.16 Total: -57.40 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.68 Total: -17.13 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.48 -8.20 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732996678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.948 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds