Wall clock time and date at job start Mon Mar 30 2020 01:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47177 * 2 1 4 4 C 1.42900 * 114.00351 * 175.55230 * 3 2 1 5 5 H 1.09003 * 109.46670 * 23.23232 * 4 3 2 6 6 C 1.50694 * 109.47283 * 143.22996 * 4 3 2 7 7 O 1.21282 * 120.00307 * 5.00137 * 6 4 3 8 8 N 1.34777 * 120.00043 * 184.99866 * 6 4 3 9 9 C 1.46499 * 119.99975 * 180.02562 * 8 6 4 10 10 H 1.09002 * 109.47420 * 324.99746 * 9 8 6 11 11 C 1.52997 * 109.47249 * 85.00035 * 9 8 6 12 12 C 1.53003 * 109.46873 * 205.00106 * 9 8 6 13 13 N 1.46499 * 109.47446 * 55.00289 * 12 9 8 14 14 C 1.36934 * 120.00342 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99650 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00185 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99793 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00083 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47106 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47096 * 120.00341 * 18 16 14 21 21 H 1.48509 * 109.46898 * 239.99818 * 18 16 14 22 22 C 1.52998 * 109.46994 * 263.23200 * 4 3 2 23 23 C 1.53001 * 117.49870 * 11.58461 * 22 4 3 24 24 C 1.53002 * 117.50086 * 302.92480 * 22 4 3 25 25 H 1.09004 * 109.47200 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47381 * 299.99985 * 1 2 3 27 27 H 1.09005 * 109.47108 * 60.00301 * 1 2 3 28 28 H 1.09004 * 109.47096 * 240.00343 * 2 1 3 29 29 H 1.08996 * 109.47107 * 119.99894 * 2 1 3 30 30 H 0.96999 * 120.00138 * 0.02562 * 8 6 4 31 31 H 1.09005 * 109.46823 * 59.99947 * 11 9 8 32 32 H 1.09001 * 109.47179 * 179.97438 * 11 9 8 33 33 H 1.08995 * 109.47543 * 299.99890 * 11 9 8 34 34 H 1.09005 * 109.46998 * 174.99775 * 12 9 8 35 35 H 1.09000 * 109.47026 * 294.99826 * 12 9 8 36 36 H 0.97002 * 119.99797 * 359.97438 * 13 12 9 37 37 H 0.97002 * 119.99742 * 179.97438 * 17 16 14 38 38 H 1.08997 * 115.54794 * 157.25377 * 22 4 3 39 39 H 1.08997 * 117.50123 * 359.97438 * 23 22 4 40 40 H 1.09005 * 117.50010 * 145.02053 * 23 22 4 41 41 H 1.08993 * 117.49806 * 214.98025 * 24 22 4 42 42 H 1.09005 * 117.49226 * 0.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4271 1.4615 0.1012 5 1 3.8915 0.5390 -0.2474 6 6 3.9002 2.6137 -0.7470 7 8 3.0937 3.3281 -1.3038 8 7 5.2196 2.8504 -0.8868 9 6 5.6795 3.9709 -1.7110 10 1 5.0078 4.0971 -2.5601 11 6 5.6880 5.2508 -0.8727 12 6 7.0942 3.6840 -2.2181 13 7 7.1101 2.3979 -2.9195 14 6 8.2761 1.9288 -3.4631 15 1 9.1840 2.5072 -3.3750 16 6 8.2913 0.7100 -4.1272 17 7 7.1850 0.0049 -4.2340 18 14 9.8818 0.0704 -4.8693 19 1 10.9740 1.0433 -4.6131 20 1 10.2270 -1.2348 -4.2507 21 1 9.7089 -0.1063 -6.3337 22 6 3.8162 1.7087 1.5601 23 6 2.7321 1.5172 2.6226 24 6 3.2060 2.9262 2.2575 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8648 2.2789 -0.4418 31 1 6.3598 5.1245 -0.0236 32 1 6.0306 6.0844 -1.4858 33 1 4.6802 5.4552 -0.5114 34 1 7.4022 4.4747 -2.9023 35 1 7.7822 3.6458 -1.3736 36 1 6.2948 1.8783 -2.9982 37 1 7.1955 -0.8467 -4.6984 38 1 4.8368 1.4346 1.8274 39 1 1.7415 1.2155 2.2822 40 1 3.0394 1.1175 3.5890 41 1 3.8250 3.4528 2.9838 42 1 2.5270 3.5508 1.6770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732996678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:54 Heat of formation + Delta-G solvation = -73.852010 kcal Electronic energy + Delta-G solvation = -21553.177975 eV Core-core repulsion = 18340.534443 eV Total energy + Delta-G solvation = -3212.643533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29775 -39.38000 -37.56633 -36.97866 -35.43773 -33.17056 -32.35857 -31.57611 -28.67102 -27.41150 -24.57030 -23.95401 -23.27858 -22.88839 -21.89126 -21.03158 -19.26334 -18.27295 -18.01525 -17.53231 -16.87690 -16.63270 -15.99990 -15.78187 -15.45383 -15.22961 -15.10469 -14.77573 -13.99455 -13.65308 -13.62070 -13.56784 -13.38860 -13.15795 -13.05560 -12.81618 -12.64698 -12.41864 -12.29667 -12.11417 -12.10260 -11.90194 -11.69873 -11.61282 -11.31362 -10.99377 -10.77736 -10.34806 -10.04036 -9.01851 -7.94940 -5.24622 1.48582 1.49592 1.59419 1.61858 1.90425 2.56061 2.73234 3.01031 3.39971 3.60953 3.72212 3.86134 3.90311 4.05566 4.14717 4.21367 4.26186 4.30703 4.36665 4.42633 4.48204 4.52273 4.79396 4.80551 4.81964 4.87303 4.94225 4.98918 5.01618 5.12360 5.18356 5.25283 5.31091 5.33566 5.51122 5.58548 6.09213 6.26076 6.60498 7.26921 7.33292 8.06423 8.30352 9.28585 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.004823 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.360244 B = 5804.376501 C = 6622.623636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.377 6.377 4 C 0.103 3.897 5 H 0.097 0.903 6 C 0.516 3.484 7 O -0.576 6.576 8 N -0.699 5.699 9 C 0.141 3.859 10 H 0.054 0.946 11 C -0.144 4.144 12 C 0.146 3.854 13 N -0.745 5.745 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.074 4.074 17 N -0.970 5.970 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.298 1.298 22 C -0.183 4.183 23 C -0.149 4.149 24 C -0.171 4.171 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.410 0.590 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.373 0.627 37 H 0.250 0.750 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.656 2.254 15.896 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.296 6.296 4 C 0.042 3.958 5 H 0.115 0.885 6 C 0.303 3.697 7 O -0.455 6.455 8 N -0.352 5.352 9 C 0.036 3.964 10 H 0.073 0.927 11 C -0.203 4.203 12 C 0.020 3.980 13 N -0.388 5.388 14 C -0.374 4.374 15 H 0.098 0.902 16 C -0.266 4.266 17 N -0.621 5.621 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.219 1.219 21 H -0.226 1.226 22 C -0.202 4.202 23 C -0.186 4.186 24 C -0.208 4.208 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.246 0.754 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.205 0.795 37 H 0.059 0.941 38 H 0.154 0.846 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.164 2.961 15.444 17.718 hybrid contribution 0.806 -1.107 -0.872 1.624 sum -7.358 1.854 14.572 16.429 Atomic orbital electron populations 1.21738 0.92339 1.03523 1.02629 1.22857 0.96782 0.82544 1.01013 1.87976 1.18934 1.28192 1.94467 1.21348 0.83579 0.96689 0.94185 0.88497 1.20822 0.82504 0.85711 0.80686 1.90645 1.54923 1.50512 1.49399 1.45823 1.06398 1.32409 1.50526 1.21096 0.95058 0.87042 0.93233 0.92731 1.21984 1.02030 0.95766 1.00503 1.21133 0.93678 0.87995 0.95215 1.42561 1.09201 1.20685 1.66326 1.19692 0.89504 1.01408 1.26838 0.90165 1.25553 1.00141 0.98246 1.02659 1.69841 1.27927 1.15073 1.49242 0.85075 0.79536 0.77954 0.77170 1.18832 1.21947 1.22571 1.22714 1.00493 1.06300 0.90668 1.23021 0.98395 0.98672 0.98510 1.22860 1.03566 0.91254 1.03104 0.88674 0.91451 0.93283 0.93905 0.90893 0.75439 0.90549 0.90200 0.93273 0.94416 0.93798 0.79483 0.94112 0.84591 0.88594 0.86365 0.87071 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 2 C 0.04 1.01 5.64 71.98 0.41 1.42 16 3 O -0.38 -11.36 8.23 -129.99 -1.07 -12.43 16 4 C 0.10 2.95 2.97 29.85 0.09 3.04 16 5 H 0.10 2.65 7.74 -2.39 -0.02 2.63 16 6 C 0.52 18.33 6.87 87.66 0.60 18.93 16 7 O -0.58 -25.26 16.17 15.95 0.26 -25.01 16 8 N -0.70 -22.86 4.48 -442.54 -1.98 -24.84 16 9 C 0.14 4.79 2.73 44.99 0.12 4.92 16 10 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 11 C -0.14 -3.84 9.48 71.98 0.68 -3.15 16 12 C 0.15 5.53 5.82 86.38 0.50 6.03 16 13 N -0.74 -36.70 5.43 -343.45 -1.87 -38.57 16 14 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 17 N -0.97 -58.76 13.06 21.65 0.28 -58.47 16 18 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 22 C -0.18 -3.94 5.77 -10.79 -0.06 -4.00 16 23 C -0.15 -2.71 9.54 30.62 0.29 -2.42 16 24 C -0.17 -3.67 9.85 30.62 0.30 -3.37 16 25 H 0.09 1.31 8.14 -2.38 -0.02 1.30 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.33 7.57 -2.39 -0.02 1.32 16 30 H 0.41 12.21 8.60 -92.71 -0.80 11.41 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.37 20.10 7.33 -92.71 -0.68 19.42 16 37 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.10 1.89 6.25 -2.39 -0.01 1.88 16 40 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -70.63 349.76 2.16 -68.47 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.47 Total: 40.18 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 4.98 Total: 3.41 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -3.57 Total: -121.89 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.81 Total: -37.44 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -70.63 2.16 -68.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732996678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.381 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds