Wall clock time and date at job start Mon Mar 30 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47123 * 2 1 4 4 C 1.42900 * 113.99520 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46642 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99867 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.63126 * 354.27823 * 7 5 4 9 9 C 1.53184 * 108.77590 * 126.39201 * 8 7 5 10 10 C 1.53045 * 109.31378 * 54.63437 * 9 8 7 11 11 H 1.09005 * 109.44438 * 58.64634 * 10 9 8 12 12 N 1.46497 * 109.46044 * 178.61581 * 10 9 8 13 13 C 1.36934 * 119.99887 * 275.06508 * 12 10 9 14 14 H 1.07998 * 120.00369 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99628 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00205 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47396 * 59.99928 * 17 15 13 19 19 H 1.48494 * 109.47197 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47136 * 300.00074 * 17 15 13 21 21 C 1.53038 * 109.53887 * 298.63733 * 10 9 8 22 22 C 1.46927 * 120.60219 * 174.26378 * 7 5 4 23 23 H 1.08997 * 109.56826 * 113.80463 * 22 7 5 24 24 C 1.53003 * 109.62006 * 353.37108 * 22 7 5 25 25 H 1.09002 * 109.47407 * 300.00276 * 1 2 3 26 26 H 1.09005 * 109.47210 * 60.00358 * 1 2 3 27 27 H 1.08999 * 109.47578 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47407 * 239.99724 * 2 1 3 29 29 H 1.08998 * 109.46892 * 120.00253 * 2 1 3 30 30 H 1.08995 * 109.48009 * 60.00041 * 4 3 2 31 31 H 1.09007 * 109.47052 * 299.99241 * 4 3 2 32 32 H 1.09001 * 109.58284 * 6.60360 * 8 7 5 33 33 H 1.09001 * 109.70358 * 246.25154 * 8 7 5 34 34 H 1.09001 * 109.50009 * 294.68432 * 9 8 7 35 35 H 1.09000 * 109.52719 * 174.60682 * 9 8 7 36 36 H 0.97000 * 119.99836 * 95.06929 * 12 10 9 37 37 H 0.96992 * 119.99780 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.50013 * 181.31168 * 21 10 9 39 39 H 1.09003 * 109.49743 * 301.38127 * 21 10 9 40 40 H 1.08997 * 109.46998 * 306.24748 * 24 22 7 41 41 H 1.09001 * 109.46669 * 66.24466 * 24 22 7 42 42 H 1.08997 * 109.47535 * 186.24202 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7728 0.0005 7 7 5.1210 3.2662 0.0002 8 6 6.1707 2.2459 0.1258 9 6 7.1548 2.4052 -1.0373 10 6 7.6766 3.8437 -1.0653 11 1 8.1622 4.0721 -0.1164 12 7 8.6433 3.9911 -2.1562 13 6 9.9561 3.6563 -1.9575 14 1 10.2789 3.2833 -0.9968 15 6 10.8722 3.7964 -2.9910 16 7 10.4789 4.2515 -4.1618 17 14 12.6629 3.3391 -2.7203 18 1 12.7569 1.9041 -2.3498 19 1 13.4295 3.5796 -3.9691 20 1 13.2262 4.1706 -1.6264 21 6 6.5086 4.8077 -1.2853 22 6 5.5164 4.6757 -0.1255 23 1 5.9894 5.0060 0.7993 24 6 4.2807 5.5327 -0.4076 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8333 0.9766 -0.8907 31 1 3.8340 0.9764 0.8893 32 1 5.7214 1.2533 0.0910 33 1 6.6979 2.3753 1.0710 34 1 6.6473 2.1840 -1.9762 35 1 7.9901 1.7177 -0.9045 36 1 8.3533 4.3258 -3.0192 37 1 11.1191 4.3498 -4.8838 38 1 6.8838 5.8301 -1.3284 39 1 6.0075 4.5642 -2.2222 40 1 3.7523 5.1343 -1.2736 41 1 3.6211 5.5158 0.4600 42 1 4.5885 6.5586 -0.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733317775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:46 Heat of formation + Delta-G solvation = -60.783927 kcal Electronic energy + Delta-G solvation = -21457.153832 eV Core-core repulsion = 18245.076974 eV Total energy + Delta-G solvation = -3212.076858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42395 -38.17950 -37.08845 -34.51376 -32.98242 -31.94636 -31.53004 -29.39387 -27.65372 -26.78346 -24.27121 -23.06961 -22.91461 -21.77689 -20.16057 -18.95489 -17.22812 -17.06425 -16.64759 -16.52527 -15.68143 -15.00774 -14.83560 -14.40810 -13.94949 -13.79244 -13.70381 -13.33194 -13.00252 -12.74130 -12.63426 -12.52826 -12.12104 -11.99485 -11.61373 -11.58537 -11.45285 -11.33743 -10.92009 -10.85767 -10.77607 -10.45594 -10.29371 -9.89230 -9.87238 -9.73311 -8.94140 -8.90592 -8.42179 -7.01379 -5.80430 -3.09934 2.64866 2.74831 3.40473 3.45154 3.46395 3.71924 4.52847 4.55152 4.77899 4.86180 4.98724 5.03357 5.09323 5.10662 5.17140 5.27589 5.33908 5.40480 5.47124 5.54251 5.60565 5.65717 5.81155 5.86965 5.89211 6.01699 6.13149 6.25209 6.34191 6.43365 6.47264 6.53198 6.74004 6.85393 6.92055 7.02583 7.52418 7.64704 8.29481 8.37796 9.48881 10.06337 10.41037 11.42038 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.003810 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.172492 B = 7347.062408 C = 7889.113156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.043 3.957 5 C 0.515 3.485 6 O -0.519 6.519 7 N -0.603 5.603 8 C 0.106 3.894 9 C -0.152 4.152 10 C 0.179 3.821 11 H 0.048 0.952 12 N -0.724 5.724 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.135 4.135 22 C 0.149 3.851 23 H 0.071 0.929 24 C -0.137 4.137 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 -7.443 9.761 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.037 4.037 5 C 0.302 3.698 6 O -0.395 6.395 7 N -0.339 5.339 8 C -0.017 4.017 9 C -0.193 4.193 10 C 0.069 3.931 11 H 0.066 0.934 12 N -0.364 5.364 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.174 4.174 22 C 0.046 3.954 23 H 0.089 0.911 24 C -0.194 4.194 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.286 -6.855 9.798 19.408 hybrid contribution 1.350 -0.640 -0.298 1.523 sum -13.936 -7.495 9.501 18.457 Atomic orbital electron populations 1.21723 0.93485 1.02137 1.03411 1.22533 0.95899 0.83563 1.00174 1.88006 1.18786 1.26166 1.95417 1.22315 0.83525 0.95545 1.02332 1.20110 0.82485 0.90203 0.76971 1.90748 1.49837 1.50365 1.48587 1.48171 1.04923 1.08338 1.72453 1.21880 0.89346 0.90298 1.00180 1.22693 0.97911 1.02035 0.96692 1.20158 0.88973 0.90918 0.93095 0.93406 1.42424 1.04847 1.78123 1.10998 1.19184 0.84822 1.36273 0.96984 0.91214 1.24755 0.98165 1.02030 0.95930 1.69652 1.34002 1.51827 1.02547 0.86278 0.85046 0.78150 0.76749 1.21276 1.21707 1.21258 1.22308 0.96173 1.01203 0.97729 1.21312 0.95982 0.79446 0.98611 0.91065 1.22189 0.96030 0.97307 1.03855 0.91759 0.91692 0.91058 0.93183 0.93297 0.90290 0.90607 0.90781 0.91186 0.92150 0.90552 0.78239 0.93411 0.90535 0.91791 0.91833 0.90727 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.50 6.66 37.16 0.25 0.74 16 3 O -0.37 -4.75 9.88 -55.14 -0.54 -5.30 16 4 C 0.04 0.49 4.77 36.01 0.17 0.66 16 5 C 0.52 7.56 7.58 -10.98 -0.08 7.48 16 6 O -0.52 -9.22 12.07 -14.35 -0.17 -9.39 16 7 N -0.60 -8.38 2.97 -165.21 -0.49 -8.87 16 8 C 0.11 1.30 6.35 -3.71 -0.02 1.28 16 9 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 10 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 N -0.72 -17.53 5.12 -53.38 -0.27 -17.80 16 13 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 17 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 C -0.14 -2.24 4.84 -26.61 -0.13 -2.37 16 22 C 0.15 2.18 3.49 -67.59 -0.24 1.95 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.14 -2.03 7.61 37.16 0.28 -1.75 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 31 H 0.08 0.68 7.71 -51.92 -0.40 0.28 16 32 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.05 6.93 -51.93 -0.36 0.69 16 41 H 0.07 1.17 6.57 -51.93 -0.34 0.83 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -31.85 334.15 -7.89 -39.74 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.18 Total: 6.05 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 0.03 Total: 0.69 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.04 Total: -53.71 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.72 Total: -14.69 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.85 -7.89 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733317775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.043 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds