Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47123 * 2 1 4 4 C 1.42900 * 113.99520 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46642 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99867 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.63126 * 354.27823 * 7 5 4 9 9 C 1.53184 * 108.77590 * 126.39201 * 8 7 5 10 10 C 1.53045 * 109.31378 * 54.63437 * 9 8 7 11 11 H 1.09005 * 109.44438 * 58.64634 * 10 9 8 12 12 N 1.46497 * 109.46044 * 178.61581 * 10 9 8 13 13 C 1.36934 * 119.99887 * 275.06508 * 12 10 9 14 14 H 1.07998 * 120.00369 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99628 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00205 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47396 * 59.99928 * 17 15 13 19 19 H 1.48494 * 109.47197 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47136 * 300.00074 * 17 15 13 21 21 C 1.53038 * 109.53887 * 298.63733 * 10 9 8 22 22 C 1.46927 * 120.60219 * 174.26378 * 7 5 4 23 23 H 1.08997 * 109.56826 * 113.80463 * 22 7 5 24 24 C 1.53003 * 109.62006 * 353.37108 * 22 7 5 25 25 H 1.09002 * 109.47407 * 300.00276 * 1 2 3 26 26 H 1.09005 * 109.47210 * 60.00358 * 1 2 3 27 27 H 1.08999 * 109.47578 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47407 * 239.99724 * 2 1 3 29 29 H 1.08998 * 109.46892 * 120.00253 * 2 1 3 30 30 H 1.08995 * 109.48009 * 60.00041 * 4 3 2 31 31 H 1.09007 * 109.47052 * 299.99241 * 4 3 2 32 32 H 1.09001 * 109.58284 * 6.60360 * 8 7 5 33 33 H 1.09001 * 109.70358 * 246.25154 * 8 7 5 34 34 H 1.09001 * 109.50009 * 294.68432 * 9 8 7 35 35 H 1.09000 * 109.52719 * 174.60682 * 9 8 7 36 36 H 0.97000 * 119.99836 * 95.06929 * 12 10 9 37 37 H 0.96992 * 119.99780 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.50013 * 181.31168 * 21 10 9 39 39 H 1.09003 * 109.49743 * 301.38127 * 21 10 9 40 40 H 1.08997 * 109.46998 * 306.24748 * 24 22 7 41 41 H 1.09001 * 109.46669 * 66.24466 * 24 22 7 42 42 H 1.08997 * 109.47535 * 186.24202 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7728 0.0005 7 7 5.1210 3.2662 0.0002 8 6 6.1707 2.2459 0.1258 9 6 7.1548 2.4052 -1.0373 10 6 7.6766 3.8437 -1.0653 11 1 8.1622 4.0721 -0.1164 12 7 8.6433 3.9911 -2.1562 13 6 9.9561 3.6563 -1.9575 14 1 10.2789 3.2833 -0.9968 15 6 10.8722 3.7964 -2.9910 16 7 10.4789 4.2515 -4.1618 17 14 12.6629 3.3391 -2.7203 18 1 12.7569 1.9041 -2.3498 19 1 13.4295 3.5796 -3.9691 20 1 13.2262 4.1706 -1.6264 21 6 6.5086 4.8077 -1.2853 22 6 5.5164 4.6757 -0.1255 23 1 5.9894 5.0060 0.7993 24 6 4.2807 5.5327 -0.4076 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8333 0.9766 -0.8907 31 1 3.8340 0.9764 0.8893 32 1 5.7214 1.2533 0.0910 33 1 6.6979 2.3753 1.0710 34 1 6.6473 2.1840 -1.9762 35 1 7.9901 1.7177 -0.9045 36 1 8.3533 4.3258 -3.0192 37 1 11.1191 4.3498 -4.8838 38 1 6.8838 5.8301 -1.3284 39 1 6.0075 4.5642 -2.2222 40 1 3.7523 5.1343 -1.2736 41 1 3.6211 5.5158 0.4600 42 1 4.5885 6.5586 -0.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733317775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = -81.358900 kcal Electronic energy + Delta-G solvation = -21458.046030 eV Core-core repulsion = 18245.076974 eV Total energy + Delta-G solvation = -3212.969056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57164 -39.18312 -38.28378 -36.15531 -34.17755 -33.67333 -32.26199 -31.03925 -28.83032 -27.93841 -25.98989 -24.41969 -23.70227 -22.98468 -21.59060 -20.16869 -19.08289 -18.08288 -17.62989 -17.42973 -16.79309 -16.66481 -16.06405 -15.50083 -15.46069 -15.36756 -14.79464 -14.68449 -14.40129 -13.75320 -13.71018 -13.43159 -13.27559 -13.21692 -13.03478 -12.81877 -12.65792 -12.60192 -12.29742 -12.21332 -12.13963 -12.02460 -11.91401 -11.69295 -11.35160 -10.86950 -10.64727 -10.08097 -9.59986 -8.99812 -7.91812 -5.20671 1.49326 1.51867 1.55960 1.57875 1.74758 2.58049 2.86544 3.41277 3.56104 3.73893 3.87414 4.03998 4.09761 4.16210 4.17668 4.26243 4.30436 4.34538 4.36964 4.51949 4.57988 4.62690 4.71634 4.76521 4.83318 4.85032 5.02057 5.04260 5.07933 5.14541 5.26121 5.28157 5.41498 5.51681 5.55998 5.69265 6.13108 6.29589 6.45169 7.19229 7.35630 8.11597 8.34460 9.31762 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.003810 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.172492 B = 7347.062408 C = 7889.113156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.400 6.400 4 C 0.045 3.955 5 C 0.508 3.492 6 O -0.558 6.558 7 N -0.603 5.603 8 C 0.113 3.887 9 C -0.142 4.142 10 C 0.172 3.828 11 H 0.050 0.950 12 N -0.739 5.739 13 C -0.235 4.235 14 H 0.081 0.919 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.971 3.029 18 H -0.275 1.275 19 H -0.301 1.301 20 H -0.279 1.279 21 C -0.123 4.123 22 C 0.153 3.847 23 H 0.087 0.913 24 C -0.125 4.125 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.370 0.630 37 H 0.249 0.751 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 -9.309 11.733 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.319 6.319 4 C -0.034 4.034 5 C 0.297 3.703 6 O -0.436 6.436 7 N -0.338 5.338 8 C -0.009 4.009 9 C -0.183 4.183 10 C 0.064 3.936 11 H 0.068 0.932 12 N -0.378 5.378 13 C -0.367 4.367 14 H 0.098 0.902 15 C -0.271 4.271 16 N -0.624 5.624 17 Si 0.801 3.199 18 H -0.201 1.201 19 H -0.227 1.227 20 H -0.205 1.205 21 C -0.162 4.162 22 C 0.050 3.950 23 H 0.105 0.895 24 C -0.182 4.182 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.342 -8.758 11.830 21.261 hybrid contribution 1.274 -0.053 -0.872 1.545 sum -14.068 -8.811 10.958 19.890 Atomic orbital electron populations 1.21770 0.93167 1.03455 1.02414 1.22780 0.96272 0.82098 1.01648 1.87971 1.19571 1.28658 1.95737 1.22383 0.83384 0.93090 1.04567 1.20777 0.82072 0.91574 0.75892 1.90734 1.50807 1.51833 1.50251 1.48231 1.05343 1.08170 1.72070 1.21962 0.88312 0.91605 0.99040 1.22465 0.98521 0.99341 0.97966 1.20422 0.88639 0.93203 0.91322 0.93190 1.42662 1.05210 1.78195 1.11699 1.19608 0.85911 1.34157 0.97003 0.90156 1.25560 1.02270 1.03296 0.95944 1.69822 1.34937 1.54229 1.03414 0.85237 0.80200 0.78301 0.76188 1.20128 1.22726 1.20474 1.22153 0.95766 1.00255 0.98047 1.21230 0.95210 0.80446 0.98143 0.89502 1.22026 0.95738 0.97876 1.02559 0.92516 0.92937 0.88572 0.92039 0.91332 0.88634 0.87350 0.87166 0.89173 0.93500 0.91198 0.79920 0.94210 0.91223 0.93272 0.93930 0.91423 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.40 -9.66 9.88 -129.94 -1.28 -10.94 16 4 C 0.04 0.90 4.77 71.24 0.34 1.24 16 5 C 0.51 13.99 7.58 87.66 0.66 14.65 16 6 O -0.56 -19.56 12.07 16.02 0.19 -19.37 16 7 N -0.60 -15.41 2.97 -795.00 -2.36 -17.78 16 8 C 0.11 2.38 6.35 86.36 0.55 2.93 16 9 C -0.14 -4.29 5.66 30.67 0.17 -4.12 16 10 C 0.17 6.30 2.73 45.02 0.12 6.42 16 11 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 12 N -0.74 -35.95 5.12 -322.81 -1.65 -37.60 16 13 C -0.24 -12.51 9.93 84.03 0.83 -11.68 16 14 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 15 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 16 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 17 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 C -0.12 -4.04 4.84 30.68 0.15 -3.90 16 22 C 0.15 4.27 3.49 44.98 0.16 4.43 16 23 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 24 C -0.12 -3.67 7.61 71.98 0.55 -3.12 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 1.59 7.92 -2.39 -0.02 1.57 16 31 H 0.11 1.44 7.71 -2.38 -0.02 1.43 16 32 H 0.11 1.59 5.93 -2.39 -0.01 1.58 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.37 19.84 7.80 -92.71 -0.72 19.12 16 37 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.42 6.93 -2.39 -0.02 1.40 16 41 H 0.07 2.10 6.57 -2.39 -0.02 2.09 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -70.10 334.15 2.70 -67.40 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.27 Total: 27.36 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.22 Total: 2.73 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -3.73 Total: -114.25 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.09 Total: -30.32 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.10 2.70 -67.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733317775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.954 kcal (2) G-P(sol) polarization free energy of solvation -70.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds