Wall clock time and date at job start Mon Mar 30 2020 01:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47309 * 2 1 4 4 C 1.42900 * 113.99953 * 184.64637 * 3 2 1 5 5 H 1.09003 * 109.47345 * 329.93761 * 4 3 2 6 6 C 1.50705 * 109.47023 * 89.93704 * 4 3 2 7 7 O 1.21284 * 120.00050 * 5.00203 * 6 4 3 8 8 N 1.34777 * 119.99659 * 184.99573 * 6 4 3 9 9 C 1.46503 * 119.99674 * 180.27538 * 8 6 4 10 10 C 1.52999 * 109.47136 * 179.72564 * 9 8 6 11 11 H 1.09000 * 109.46929 * 295.00605 * 10 9 8 12 12 C 1.52991 * 109.47139 * 175.00130 * 10 9 8 13 13 N 1.46504 * 109.46888 * 54.99929 * 10 9 8 14 14 C 1.36933 * 119.99643 * 204.99811 * 13 10 9 15 15 H 1.08000 * 120.00662 * 0.02562 * 14 13 10 16 16 C 1.38817 * 119.99494 * 179.97438 * 14 13 10 17 17 N 1.31622 * 119.99559 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00328 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47267 * 89.99468 * 18 16 14 20 20 H 1.48501 * 109.47365 * 209.99583 * 18 16 14 21 21 H 1.48500 * 109.46923 * 329.99701 * 18 16 14 22 22 C 1.53000 * 109.46846 * 209.93612 * 4 3 2 23 23 C 1.52995 * 117.49840 * 132.00488 * 22 4 3 24 24 C 1.52993 * 117.49871 * 63.34511 * 22 4 3 25 25 H 1.09006 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46823 * 299.99402 * 1 2 3 27 27 H 1.08998 * 109.47115 * 59.99849 * 1 2 3 28 28 H 1.09008 * 109.46905 * 240.00260 * 2 1 3 29 29 H 1.08995 * 109.47554 * 120.00403 * 2 1 3 30 30 H 0.96995 * 119.99812 * 0.02562 * 8 6 4 31 31 H 1.09003 * 109.47215 * 299.72671 * 9 8 6 32 32 H 1.09005 * 109.46786 * 59.72312 * 9 8 6 33 33 H 1.08999 * 109.47288 * 179.97438 * 12 10 9 34 34 H 1.09008 * 109.47419 * 299.99842 * 12 10 9 35 35 H 1.09002 * 109.47572 * 60.00240 * 12 10 9 36 36 H 0.96995 * 119.99924 * 25.00181 * 13 10 9 37 37 H 0.97004 * 119.99841 * 180.02562 * 17 16 14 38 38 H 1.09000 * 115.54825 * 277.67691 * 22 4 3 39 39 H 1.09001 * 117.49823 * 0.02562 * 23 22 4 40 40 H 1.09003 * 117.49648 * 145.02108 * 23 22 4 41 41 H 1.08998 * 117.50277 * 214.97823 * 24 22 4 42 42 H 1.09004 * 117.49953 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4269 1.4615 -0.1057 5 1 3.8965 0.5904 0.3512 6 6 3.8178 1.5384 -1.5592 7 8 2.9608 1.5909 -2.4157 8 7 5.1199 1.5491 -1.9071 9 6 5.5000 1.6300 -3.3196 10 6 7.0254 1.6323 -3.4380 11 1 7.4240 2.5374 -2.9797 12 6 7.4223 1.5910 -4.9149 13 7 7.5701 0.4575 -2.7528 14 6 8.8525 0.4781 -2.2732 15 1 9.4623 1.3604 -2.3997 16 6 9.3684 -0.6349 -1.6235 17 7 10.6010 -0.6149 -1.1621 18 14 8.3135 -2.1607 -1.4041 19 1 8.4997 -3.0630 -2.5688 20 1 8.7168 -2.8669 -0.1615 21 1 6.8854 -1.7654 -1.3075 22 6 3.8917 2.7284 0.6152 23 6 5.0721 2.5995 1.5800 24 6 3.6570 2.8085 2.1249 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.8052 1.5069 -1.2220 31 1 5.0953 0.7708 -3.8546 32 1 5.1006 2.5478 -3.7513 33 1 8.5091 1.5931 -4.9993 34 1 7.0237 0.6858 -5.3732 35 1 7.0171 2.4651 -5.4247 36 1 7.0223 -0.3348 -2.6389 37 1 10.9616 -1.3928 -0.7084 38 1 3.8078 3.6524 0.0431 39 1 5.5178 1.6121 1.7007 40 1 5.7646 3.4388 1.6429 41 1 3.4192 3.7852 2.5462 42 1 3.1711 1.9587 2.6045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752873627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:40 Heat of formation + Delta-G solvation = -52.216247 kcal Electronic energy + Delta-G solvation = -21536.350378 eV Core-core repulsion = 18324.645042 eV Total energy + Delta-G solvation = -3211.705336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05210 -37.93507 -36.67721 -36.31225 -33.59860 -31.97054 -31.44487 -29.51905 -28.15530 -25.39113 -23.38908 -22.94178 -22.37395 -21.35302 -20.30479 -20.04458 -18.04570 -17.37518 -16.92050 -15.78829 -15.56753 -15.24299 -15.14992 -14.80960 -14.20915 -13.81734 -13.62139 -13.12511 -12.90383 -12.70924 -12.58315 -12.26707 -12.12159 -11.95815 -11.67205 -11.61790 -11.53151 -11.14867 -11.00827 -10.86190 -10.66304 -10.48325 -10.45386 -10.20107 -10.10863 -9.68167 -9.16107 -9.03404 -8.75526 -7.40053 -5.86421 -3.23182 2.75482 3.11924 3.27311 3.32546 3.37819 3.46517 4.06405 4.49417 4.54582 4.71971 4.80804 4.89564 4.98455 5.07713 5.14004 5.20275 5.28438 5.33252 5.42802 5.43074 5.56756 5.59749 5.75766 5.80552 5.83406 5.96017 5.99611 6.02871 6.03617 6.06543 6.17809 6.36377 6.65474 6.69960 6.91498 7.01446 7.81485 7.89237 8.32132 8.44947 9.09897 9.82208 10.01677 11.31590 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.005484 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.722836 B = 5104.896472 C = 5424.089746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.106 3.894 5 H 0.084 0.916 6 C 0.490 3.510 7 O -0.538 6.538 8 N -0.712 5.712 9 C 0.112 3.888 10 C 0.165 3.835 11 H 0.063 0.937 12 C -0.163 4.163 13 N -0.748 5.748 14 C -0.246 4.246 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.881 3.119 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.153 4.153 23 C -0.168 4.168 24 C -0.161 4.161 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.410 0.590 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 4.389 4.274 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.044 3.956 5 H 0.102 0.898 6 C 0.275 3.725 7 O -0.415 6.415 8 N -0.365 5.365 9 C -0.013 4.013 10 C 0.056 3.944 11 H 0.081 0.919 12 C -0.223 4.223 13 N -0.392 5.392 14 C -0.376 4.376 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.578 5.578 18 Si 0.711 3.289 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.172 4.172 23 C -0.205 4.205 24 C -0.198 4.198 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.247 0.753 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.854 4.646 3.747 16.940 hybrid contribution -0.051 -1.537 0.336 1.574 sum -15.904 3.110 4.083 16.712 Atomic orbital electron populations 1.21695 0.93501 1.02084 1.03139 1.22572 0.95926 0.83730 1.00040 1.87982 1.18792 1.26507 1.93737 1.21469 0.83598 0.98350 0.92150 0.89805 1.21164 0.82943 0.76880 0.91523 1.90674 1.49809 1.49429 1.51606 1.46037 1.07138 1.73647 1.09701 1.21749 0.96498 1.01590 0.81460 1.20483 0.89252 0.92015 0.92699 0.91926 1.22328 1.02422 1.00094 0.97468 1.42837 1.14115 1.13268 1.68981 1.19060 0.88041 1.00979 1.29493 0.89038 1.24649 0.96026 0.97609 1.00464 1.69695 1.14333 1.30227 1.43554 0.86620 0.79984 0.84649 0.77605 1.21098 1.21727 1.20484 1.22049 1.04360 0.97959 0.92841 1.23151 0.91132 1.04285 1.01911 1.22855 0.99019 1.03399 0.94563 0.91221 0.91969 0.91599 0.93126 0.93451 0.75341 0.91980 0.91418 0.91811 0.93331 0.93831 0.80573 0.92987 0.86885 0.88056 0.87694 0.88439 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 2 C 0.05 0.66 6.43 37.16 0.24 0.90 16 3 O -0.35 -5.11 9.48 -55.09 -0.52 -5.63 16 4 C 0.11 1.47 2.69 -27.88 -0.07 1.39 16 5 H 0.08 1.07 7.61 -51.93 -0.40 0.67 16 6 C 0.49 8.11 7.12 -10.98 -0.08 8.03 16 7 O -0.54 -10.62 16.51 -14.30 -0.24 -10.86 16 8 N -0.71 -11.41 5.35 -60.29 -0.32 -11.73 16 9 C 0.11 1.81 5.23 -4.04 -0.02 1.79 16 10 C 0.17 2.93 3.05 -67.93 -0.21 2.72 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.16 -2.68 9.49 37.15 0.35 -2.32 16 13 N -0.75 -16.23 4.36 -53.43 -0.23 -16.46 16 14 C -0.25 -6.43 10.41 -15.06 -0.16 -6.59 16 15 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 16 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 17 N -0.93 -27.95 13.97 55.49 0.78 -27.17 16 18 Si 0.88 21.14 27.74 -169.99 -4.71 16.42 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 22 C -0.15 -1.84 5.31 -90.63 -0.48 -2.32 16 23 C -0.17 -1.78 10.18 -26.70 -0.27 -2.05 16 24 C -0.16 -1.62 10.21 -26.70 -0.27 -1.89 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.68 8.13 -51.92 -0.42 0.26 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.41 6.53 8.14 -40.82 -0.33 6.20 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.11 1.40 8.13 -51.93 -0.42 0.97 16 39 H 0.10 1.09 8.07 -51.93 -0.42 0.68 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -31.38 351.94 -7.94 -39.32 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -7.31 Total: 12.11 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.69 Total: -1.30 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.22 Total: -55.36 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.76 Total: -16.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.38 -7.94 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752873627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.899 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds