Wall clock time and date at job start Mon Mar 30 2020 01:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47309 * 2 1 4 4 C 1.42900 * 113.99953 * 184.64637 * 3 2 1 5 5 H 1.09003 * 109.47345 * 329.93761 * 4 3 2 6 6 C 1.50705 * 109.47023 * 89.93704 * 4 3 2 7 7 O 1.21284 * 120.00050 * 5.00203 * 6 4 3 8 8 N 1.34777 * 119.99659 * 184.99573 * 6 4 3 9 9 C 1.46503 * 119.99674 * 180.27538 * 8 6 4 10 10 C 1.52999 * 109.47136 * 179.72564 * 9 8 6 11 11 H 1.09000 * 109.46929 * 295.00605 * 10 9 8 12 12 C 1.52991 * 109.47139 * 175.00130 * 10 9 8 13 13 N 1.46504 * 109.46888 * 54.99929 * 10 9 8 14 14 C 1.36933 * 119.99643 * 204.99811 * 13 10 9 15 15 H 1.08000 * 120.00662 * 0.02562 * 14 13 10 16 16 C 1.38817 * 119.99494 * 179.97438 * 14 13 10 17 17 N 1.31622 * 119.99559 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00328 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47267 * 89.99468 * 18 16 14 20 20 H 1.48501 * 109.47365 * 209.99583 * 18 16 14 21 21 H 1.48500 * 109.46923 * 329.99701 * 18 16 14 22 22 C 1.53000 * 109.46846 * 209.93612 * 4 3 2 23 23 C 1.52995 * 117.49840 * 132.00488 * 22 4 3 24 24 C 1.52993 * 117.49871 * 63.34511 * 22 4 3 25 25 H 1.09006 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46823 * 299.99402 * 1 2 3 27 27 H 1.08998 * 109.47115 * 59.99849 * 1 2 3 28 28 H 1.09008 * 109.46905 * 240.00260 * 2 1 3 29 29 H 1.08995 * 109.47554 * 120.00403 * 2 1 3 30 30 H 0.96995 * 119.99812 * 0.02562 * 8 6 4 31 31 H 1.09003 * 109.47215 * 299.72671 * 9 8 6 32 32 H 1.09005 * 109.46786 * 59.72312 * 9 8 6 33 33 H 1.08999 * 109.47288 * 179.97438 * 12 10 9 34 34 H 1.09008 * 109.47419 * 299.99842 * 12 10 9 35 35 H 1.09002 * 109.47572 * 60.00240 * 12 10 9 36 36 H 0.96995 * 119.99924 * 25.00181 * 13 10 9 37 37 H 0.97004 * 119.99841 * 180.02562 * 17 16 14 38 38 H 1.09000 * 115.54825 * 277.67691 * 22 4 3 39 39 H 1.09001 * 117.49823 * 0.02562 * 23 22 4 40 40 H 1.09003 * 117.49648 * 145.02108 * 23 22 4 41 41 H 1.08998 * 117.50277 * 214.97823 * 24 22 4 42 42 H 1.09004 * 117.49953 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4269 1.4615 -0.1057 5 1 3.8965 0.5904 0.3512 6 6 3.8178 1.5384 -1.5592 7 8 2.9608 1.5909 -2.4157 8 7 5.1199 1.5491 -1.9071 9 6 5.5000 1.6300 -3.3196 10 6 7.0254 1.6323 -3.4380 11 1 7.4240 2.5374 -2.9797 12 6 7.4223 1.5910 -4.9149 13 7 7.5701 0.4575 -2.7528 14 6 8.8525 0.4781 -2.2732 15 1 9.4623 1.3604 -2.3997 16 6 9.3684 -0.6349 -1.6235 17 7 10.6010 -0.6149 -1.1621 18 14 8.3135 -2.1607 -1.4041 19 1 8.4997 -3.0630 -2.5688 20 1 8.7168 -2.8669 -0.1615 21 1 6.8854 -1.7654 -1.3075 22 6 3.8917 2.7284 0.6152 23 6 5.0721 2.5995 1.5800 24 6 3.6570 2.8085 2.1249 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.8052 1.5069 -1.2220 31 1 5.0953 0.7708 -3.8546 32 1 5.1006 2.5478 -3.7513 33 1 8.5091 1.5931 -4.9993 34 1 7.0237 0.6858 -5.3732 35 1 7.0171 2.4651 -5.4247 36 1 7.0223 -0.3348 -2.6389 37 1 10.9616 -1.3928 -0.7084 38 1 3.8078 3.6524 0.0431 39 1 5.5178 1.6121 1.7007 40 1 5.7646 3.4388 1.6429 41 1 3.4192 3.7852 2.5462 42 1 3.1711 1.9587 2.6045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752873627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:39 Heat of formation + Delta-G solvation = -72.546716 kcal Electronic energy + Delta-G solvation = -21537.231973 eV Core-core repulsion = 18324.645042 eV Total energy + Delta-G solvation = -3212.586931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26087 -39.10204 -37.95135 -37.48243 -35.21047 -33.75604 -32.36794 -31.26219 -29.29388 -26.68882 -25.27173 -23.87574 -23.17719 -22.38834 -21.82132 -21.26486 -19.86670 -18.63954 -18.08975 -17.11401 -16.80013 -16.61487 -16.20633 -16.00944 -15.85718 -15.09937 -14.90946 -14.60353 -14.36833 -14.07147 -13.76574 -13.47728 -13.44123 -13.25912 -12.94186 -12.87136 -12.52980 -12.43951 -12.39689 -12.13050 -12.10050 -11.79338 -11.71265 -11.65808 -11.35463 -11.14271 -11.03384 -10.31510 -10.09838 -9.34473 -7.99410 -5.33175 1.36939 1.40807 1.47075 1.48626 2.01429 2.42572 2.48898 3.14495 3.33021 3.52125 3.56646 3.75902 3.80803 3.90812 4.00670 4.12602 4.16718 4.24952 4.31418 4.41173 4.50434 4.58928 4.70079 4.78864 4.81379 4.82096 4.98464 5.00278 5.01859 5.13956 5.21945 5.22699 5.25650 5.35451 5.54947 5.81691 5.99831 6.23566 6.52543 7.09045 7.15738 7.83543 8.02814 9.21810 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.005484 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.722836 B = 5104.896472 C = 5424.089746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.368 6.368 4 C 0.109 3.891 5 H 0.097 0.903 6 C 0.489 3.511 7 O -0.574 6.574 8 N -0.709 5.709 9 C 0.119 3.881 10 C 0.165 3.835 11 H 0.061 0.939 12 C -0.157 4.157 13 N -0.747 5.747 14 C -0.222 4.222 15 H 0.063 0.937 16 C -0.055 4.055 17 N -0.981 5.981 18 Si 0.945 3.055 19 H -0.289 1.289 20 H -0.297 1.297 21 H -0.252 1.252 22 C -0.169 4.169 23 C -0.165 4.165 24 C -0.147 4.147 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.412 0.588 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.363 0.637 37 H 0.256 0.744 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.193 4.260 4.811 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.286 6.286 4 C 0.048 3.952 5 H 0.114 0.886 6 C 0.276 3.724 7 O -0.453 6.453 8 N -0.362 5.362 9 C -0.005 4.005 10 C 0.057 3.943 11 H 0.079 0.921 12 C -0.217 4.217 13 N -0.392 5.392 14 C -0.353 4.353 15 H 0.081 0.919 16 C -0.247 4.247 17 N -0.632 5.632 18 Si 0.773 3.227 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.177 1.177 22 C -0.187 4.187 23 C -0.202 4.202 24 C -0.183 4.183 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.196 0.804 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.741 4.546 4.263 18.803 hybrid contribution 0.522 -1.392 0.108 1.490 sum -17.219 3.154 4.371 18.043 Atomic orbital electron populations 1.21708 0.92057 1.03444 1.02816 1.22784 0.97224 0.82880 1.00176 1.87975 1.19114 1.27910 1.93594 1.21511 0.83620 0.99730 0.90363 0.88570 1.21702 0.82464 0.75747 0.92533 1.90652 1.50636 1.51172 1.52881 1.46041 1.07209 1.73299 1.09632 1.21647 0.94887 1.02163 0.81804 1.20633 0.90229 0.90331 0.93135 0.92061 1.22219 1.01142 1.01804 0.96512 1.42799 1.12561 1.14608 1.69194 1.18984 0.89180 0.99486 1.27600 0.91895 1.25328 0.97187 1.00852 1.01300 1.69863 1.16550 1.31096 1.45650 0.85576 0.79723 0.80611 0.76773 1.21552 1.22416 1.17676 1.21990 1.06034 0.96840 0.93864 1.23200 0.91392 1.04509 1.01117 1.22958 0.98205 1.04450 0.92725 0.89054 0.91076 0.93077 0.94807 0.91386 0.75167 0.92305 0.90023 0.93864 0.93062 0.90667 0.80382 0.93472 0.87628 0.88186 0.87062 0.87009 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 1.04 6.43 71.98 0.46 1.50 16 3 O -0.37 -10.16 9.48 -129.99 -1.23 -11.39 16 4 C 0.11 2.86 2.69 29.85 0.08 2.94 16 5 H 0.10 2.25 7.61 -2.39 -0.02 2.23 16 6 C 0.49 15.61 7.12 87.66 0.62 16.23 16 7 O -0.57 -22.23 16.51 15.95 0.26 -21.97 16 8 N -0.71 -21.61 5.35 -463.04 -2.48 -24.09 16 9 C 0.12 3.65 5.23 86.38 0.45 4.10 16 10 C 0.16 5.58 3.05 44.99 0.14 5.72 16 11 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 12 C -0.16 -4.86 9.49 71.98 0.68 -4.18 16 13 N -0.75 -31.43 4.36 -322.95 -1.41 -32.84 16 14 C -0.22 -11.57 10.41 84.04 0.87 -10.70 16 15 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 16 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 17 N -0.98 -59.98 13.97 21.65 0.30 -59.68 16 18 Si 0.94 43.28 27.74 68.60 1.90 45.18 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.25 -10.29 6.52 99.48 0.65 -9.64 16 22 C -0.17 -3.76 5.31 -10.80 -0.06 -3.82 16 23 C -0.17 -3.18 10.18 30.62 0.31 -2.86 16 24 C -0.15 -2.58 10.21 30.61 0.31 -2.27 16 25 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 0.87 8.13 -2.38 -0.02 0.85 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.41 12.43 8.14 -92.71 -0.75 11.68 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.36 15.14 5.66 -92.71 -0.52 14.61 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.11 2.50 8.13 -2.39 -0.02 2.48 16 39 H 0.10 1.96 8.07 -2.39 -0.02 1.94 16 40 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 42 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -67.40 351.94 2.10 -65.30 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -0.34 Total: 37.29 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 5.09 Total: 2.19 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -3.58 Total: -116.60 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.97 Total: -33.36 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.90 Total: 45.18 kcal Total: -67.40 2.10 -65.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752873627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.243 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds