Wall clock time and date at job start Mon Mar 30 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47256 * 2 1 4 4 C 1.42903 * 114.00620 * 184.64058 * 3 2 1 5 5 H 1.09003 * 109.46641 * 329.93704 * 4 3 2 6 6 C 1.50690 * 109.46850 * 89.93595 * 4 3 2 7 7 O 1.21284 * 120.00342 * 5.00309 * 6 4 3 8 8 N 1.34784 * 119.99927 * 185.00613 * 6 4 3 9 9 C 1.46496 * 119.99900 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.47401 * 64.99682 * 10 9 8 12 12 C 1.53000 * 109.46994 * 184.99996 * 10 9 8 13 13 N 1.46503 * 109.47172 * 304.99528 * 10 9 8 14 14 C 1.36928 * 120.00061 * 154.99797 * 13 10 9 15 15 H 1.08004 * 120.00094 * 0.02562 * 14 13 10 16 16 C 1.38811 * 120.00200 * 180.02562 * 14 13 10 17 17 N 1.31620 * 120.00004 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00136 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47124 * 60.00194 * 18 16 14 20 20 H 1.48499 * 109.47106 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47210 * 300.00346 * 18 16 14 22 22 C 1.52992 * 109.47287 * 209.93895 * 4 3 2 23 23 C 1.53002 * 117.49835 * 132.00521 * 22 4 3 24 24 C 1.52998 * 117.50146 * 63.34469 * 22 4 3 25 25 H 1.09002 * 109.47105 * 60.00608 * 1 2 3 26 26 H 1.09003 * 109.46627 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47618 * 300.00142 * 1 2 3 28 28 H 1.08995 * 109.47618 * 239.99858 * 2 1 3 29 29 H 1.09002 * 109.47311 * 120.00148 * 2 1 3 30 30 H 0.96990 * 119.99621 * 359.97438 * 8 6 4 31 31 H 1.08997 * 109.47523 * 59.99749 * 9 8 6 32 32 H 1.09003 * 109.47238 * 299.99066 * 9 8 6 33 33 H 1.09005 * 109.46971 * 299.99423 * 12 10 9 34 34 H 1.08997 * 109.47024 * 180.02562 * 12 10 9 35 35 H 1.08995 * 109.47302 * 59.99626 * 12 10 9 36 36 H 0.97003 * 119.99665 * 335.00107 * 13 10 9 37 37 H 0.96993 * 120.00448 * 179.97438 * 17 16 14 38 38 H 1.08998 * 115.55163 * 277.67386 * 22 4 3 39 39 H 1.08992 * 117.49802 * 359.97438 * 23 22 4 40 40 H 1.09005 * 117.49626 * 145.02381 * 23 22 4 41 41 H 1.08997 * 117.49842 * 214.97954 * 24 22 4 42 42 H 1.09004 * 117.49959 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4269 1.4616 -0.1056 5 1 3.8964 0.5905 0.3514 6 6 3.8178 1.5386 -1.5589 7 8 2.9609 1.5909 -2.4155 8 7 5.1200 1.5492 -1.9068 9 6 5.5001 1.6246 -3.3195 10 6 7.0255 1.6218 -3.4381 11 1 7.4157 0.6672 -3.0850 12 6 7.4238 1.8257 -4.9012 13 7 7.5805 2.7069 -2.6252 14 6 8.8624 2.6208 -2.1515 15 1 9.4645 1.7531 -2.3775 16 6 9.3881 3.6487 -1.3809 17 7 8.6542 4.7060 -1.1050 18 14 11.1371 3.5316 -0.7352 19 1 12.0799 3.4212 -1.8772 20 1 11.4557 4.7481 0.0545 21 1 11.2658 2.3321 0.1307 22 6 3.8915 2.7285 0.6153 23 6 5.0719 2.5996 1.5802 24 6 3.6568 2.8086 2.1251 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.8053 1.5077 -1.2217 31 1 5.1040 2.5424 -3.7540 32 1 5.0925 0.7651 -3.8518 33 1 7.0109 1.0183 -5.5060 34 1 8.5104 1.8232 -4.9857 35 1 7.0336 2.7802 -5.2543 36 1 7.0398 3.4864 -2.4225 37 1 9.0213 5.4241 -0.5662 38 1 3.8077 3.6525 0.0433 39 1 5.5171 1.6122 1.7016 40 1 5.7644 3.4391 1.6432 41 1 3.4189 3.7854 2.5463 42 1 3.1709 1.9589 2.6047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752873629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:43 Heat of formation + Delta-G solvation = -55.674437 kcal Electronic energy + Delta-G solvation = -21515.445110 eV Core-core repulsion = 18303.589816 eV Total energy + Delta-G solvation = -3211.855294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.90955 -37.78448 -36.48994 -36.11634 -33.47202 -31.88450 -31.36805 -28.87943 -27.97966 -25.27133 -23.63737 -22.89614 -22.15079 -21.17876 -20.19546 -19.86183 -17.64179 -17.17199 -16.83815 -15.58547 -15.43240 -15.14675 -15.09073 -14.45491 -14.23613 -13.64779 -13.49411 -13.11643 -12.91208 -12.62153 -12.25846 -12.10160 -11.97191 -11.87958 -11.46300 -11.38856 -11.36636 -11.00405 -10.88361 -10.76896 -10.48542 -10.38592 -10.28027 -10.05640 -10.02879 -9.73125 -9.05554 -8.95030 -8.59461 -7.05699 -5.82781 -3.13049 2.88323 3.27159 3.38525 3.44205 3.44782 3.64039 4.23444 4.52713 4.72969 4.88803 4.93785 5.01757 5.12786 5.19264 5.28298 5.32858 5.45966 5.47338 5.57189 5.60490 5.62548 5.77673 5.86862 5.94200 6.05452 6.07600 6.07986 6.17812 6.26480 6.31042 6.32279 6.55433 6.74134 6.84968 7.02124 7.12119 7.63497 7.97155 8.34324 8.59721 9.46396 10.01309 10.37504 11.38802 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.005208 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.586036 B = 5375.449916 C = 6510.969256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.110 3.890 5 H 0.081 0.919 6 C 0.490 3.510 7 O -0.541 6.541 8 N -0.707 5.707 9 C 0.115 3.885 10 C 0.160 3.840 11 H 0.052 0.948 12 C -0.162 4.162 13 N -0.722 5.722 14 C -0.244 4.244 15 H 0.069 0.931 16 C -0.008 4.008 17 N -0.928 5.928 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.165 4.165 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.411 0.589 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -8.822 4.221 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.048 3.952 5 H 0.099 0.901 6 C 0.275 3.725 7 O -0.419 6.419 8 N -0.360 5.360 9 C -0.010 4.010 10 C 0.049 3.951 11 H 0.070 0.930 12 C -0.223 4.223 13 N -0.365 5.365 14 C -0.375 4.375 15 H 0.087 0.913 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.170 4.170 23 C -0.197 4.197 24 C -0.202 4.202 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.247 0.753 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.262 -8.666 3.681 14.680 hybrid contribution 1.421 0.096 0.546 1.525 sum -9.841 -8.571 4.227 13.718 Atomic orbital electron populations 1.21697 0.93629 1.01960 1.03207 1.22539 0.95875 0.83947 0.99785 1.88005 1.19030 1.26256 1.93729 1.21447 0.83296 0.98274 0.92174 0.90144 1.21146 0.82994 0.76922 0.91459 1.90666 1.49887 1.49690 1.51625 1.45990 1.07050 1.73348 1.09646 1.21687 0.96520 1.01345 0.81439 1.20504 0.89422 0.93496 0.91642 0.92953 1.22362 1.01892 1.00221 0.97822 1.42451 1.13905 1.20027 1.60121 1.19164 0.89896 1.02851 1.25560 0.91257 1.24711 0.98065 0.96722 1.00939 1.69651 1.36214 1.08809 1.42934 0.86321 0.84826 0.76729 0.78572 1.21355 1.21746 1.21292 1.22028 1.04342 0.97988 0.92640 1.23101 0.91013 1.04144 1.01436 1.22853 0.99441 1.03168 0.94761 0.91590 0.91323 0.91965 0.93243 0.93616 0.75302 0.91876 0.91988 0.94250 0.92334 0.93204 0.78031 0.93442 0.86774 0.88610 0.87237 0.88561 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.67 6.44 37.16 0.24 0.90 16 3 O -0.35 -5.34 9.48 -55.09 -0.52 -5.86 16 4 C 0.11 1.60 2.69 -27.89 -0.07 1.53 16 5 H 0.08 1.00 7.61 -51.93 -0.40 0.61 16 6 C 0.49 8.55 7.11 -10.99 -0.08 8.48 16 7 O -0.54 -11.19 16.51 -14.31 -0.24 -11.43 16 8 N -0.71 -12.01 5.35 -60.29 -0.32 -12.33 16 9 C 0.11 1.99 5.23 -4.04 -0.02 1.97 16 10 C 0.16 2.98 3.05 -67.93 -0.21 2.77 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 13 N -0.72 -16.67 4.56 -53.42 -0.24 -16.92 16 14 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 15 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 17 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 18 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.15 -2.17 5.31 -90.62 -0.48 -2.66 16 23 C -0.16 -2.12 10.18 -26.69 -0.27 -2.39 16 24 C -0.17 -1.99 10.21 -26.69 -0.27 -2.26 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.41 6.98 8.14 -40.82 -0.33 6.65 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.39 9.70 7.80 -40.82 -0.32 9.38 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.11 1.84 8.13 -51.93 -0.42 1.42 16 39 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 40 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -30.03 355.05 -8.30 -38.33 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -7.35 Total: 14.19 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.68 Total: -1.97 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.16 Total: -54.91 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.76 Total: -17.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.03 -8.30 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752873629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.341 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds