Wall clock time and date at job start Mon Mar 30 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.46911 * 2 1 4 4 C 1.42901 * 114.00024 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46765 * 330.00088 * 4 3 2 6 6 C 1.53003 * 109.47088 * 89.99624 * 4 3 2 7 7 C 1.50700 * 109.46873 * 209.99507 * 4 3 2 8 8 O 1.21272 * 120.00163 * 351.32164 * 7 4 3 9 9 N 1.34775 * 119.99724 * 171.31913 * 7 4 3 10 10 C 1.47020 * 125.64952 * 184.50366 * 9 7 4 11 11 C 1.54334 * 107.26774 * 178.84954 * 10 9 7 12 12 C 1.55152 * 103.02110 * 338.14289 * 11 10 9 13 13 H 1.08999 * 111.00798 * 277.23261 * 12 11 10 14 14 C 1.53005 * 111.00592 * 153.37687 * 12 11 10 15 15 N 1.46508 * 109.46779 * 72.80200 * 14 12 11 16 16 C 1.36929 * 119.99604 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00308 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00049 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00252 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47205 * 60.00477 * 20 18 16 22 22 H 1.48502 * 109.47388 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47314 * 300.00455 * 20 18 16 24 24 C 1.47432 * 125.64922 * 4.81334 * 9 7 4 25 25 H 1.09000 * 109.47740 * 300.00252 * 1 2 3 26 26 H 1.08999 * 109.47389 * 60.00344 * 1 2 3 27 27 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47740 * 239.99748 * 2 1 3 29 29 H 1.09003 * 109.47283 * 119.99150 * 2 1 3 30 30 H 1.09005 * 109.46927 * 65.78604 * 6 4 3 31 31 H 1.08995 * 109.47267 * 185.78924 * 6 4 3 32 32 H 1.08997 * 109.47201 * 305.78918 * 6 4 3 33 33 H 1.09003 * 109.88333 * 298.40167 * 10 9 7 34 34 H 1.09009 * 109.88012 * 59.56472 * 10 9 7 35 35 H 1.09001 * 110.85225 * 219.67531 * 11 10 9 36 36 H 1.08998 * 110.66525 * 96.52582 * 11 10 9 37 37 H 1.08995 * 109.47317 * 192.80343 * 14 12 11 38 38 H 1.08995 * 109.47029 * 312.80724 * 14 12 11 39 39 H 0.96998 * 119.99804 * 0.02562 * 15 14 12 40 40 H 0.97001 * 120.00426 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.36498 * 322.93120 * 24 9 7 42 42 H 1.09005 * 110.36168 * 85.25421 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.8630 0.6018 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8340 2.7267 0.7109 8 8 2.9905 3.5368 1.0320 9 7 5.1320 2.9591 0.9893 10 6 5.6530 4.1009 1.7551 11 6 7.1847 3.9330 1.8429 12 6 7.3844 2.4138 1.5992 13 1 7.2326 1.8474 2.5180 14 6 8.7655 2.1306 1.0047 15 7 9.7881 2.3098 2.0384 16 6 11.1086 2.1089 1.7371 17 1 11.3964 1.8187 0.7373 18 6 12.0777 2.2792 2.7163 19 7 11.7271 2.6333 3.9346 20 14 13.8792 2.0059 2.3052 21 1 14.2889 2.9428 1.2284 22 1 14.7056 2.2495 3.5148 23 1 14.0755 0.6075 1.8456 24 6 6.2652 2.1140 0.5709 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.5905 2.4127 -1.9251 31 1 5.0296 1.4826 -1.4430 32 1 3.5618 0.6340 -1.9846 33 1 5.4088 5.0323 1.2443 34 1 5.2241 4.1017 2.7573 35 1 7.5502 4.2165 2.8299 36 1 7.6807 4.5165 1.0673 37 1 8.7986 1.1059 0.6346 38 1 8.9554 2.8202 0.1823 39 1 9.5296 2.5700 2.9364 40 1 12.4042 2.7520 4.6190 41 1 5.9873 1.0607 0.6090 42 1 6.5903 2.3854 -0.4335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752930304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:45 Heat of formation + Delta-G solvation = -74.373948 kcal Electronic energy + Delta-G solvation = -20975.965691 eV Core-core repulsion = 17763.299525 eV Total energy + Delta-G solvation = -3212.666166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32755 -38.43705 -37.25344 -34.69066 -32.96688 -32.04289 -30.77466 -29.81378 -28.93356 -25.67540 -24.73297 -23.12175 -22.59084 -22.14169 -20.17265 -19.39085 -17.52998 -17.10797 -16.86248 -16.13051 -16.01184 -15.48405 -14.73715 -14.28373 -13.90930 -13.69420 -13.60349 -13.38196 -13.16072 -13.00274 -12.79030 -12.65975 -12.45914 -12.28488 -12.19076 -11.69151 -11.52900 -11.30513 -11.20480 -10.88560 -10.73996 -10.52921 -10.42753 -10.16474 -10.06516 -9.75154 -9.54335 -8.91984 -8.65165 -6.98012 -5.81005 -3.10261 2.55483 2.61964 3.41201 3.45751 3.46790 3.61945 4.30207 4.49897 4.60866 4.68464 4.70230 4.82851 4.89509 4.94732 5.06073 5.07529 5.21738 5.31220 5.40247 5.43900 5.48360 5.50758 5.56975 5.62201 5.82804 5.84227 5.85742 5.94571 6.01557 6.07566 6.17464 6.36205 6.39942 6.63242 6.76749 6.86110 7.46287 7.64918 8.12651 8.37602 9.48971 10.05626 10.40114 11.41685 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036639 B = 0.003199 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.032093 B = 8749.583920 C = 9096.027285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.076 3.924 5 H 0.085 0.915 6 C -0.173 4.173 7 C 0.529 3.471 8 O -0.525 6.525 9 N -0.615 5.615 10 C 0.109 3.891 11 C -0.121 4.121 12 C -0.106 4.106 13 H 0.086 0.914 14 C 0.165 3.835 15 N -0.731 5.731 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.102 3.898 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.075 0.925 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.630 -4.686 -8.885 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.014 3.986 5 H 0.103 0.897 6 C -0.230 4.230 7 C 0.316 3.684 8 O -0.401 6.401 9 N -0.351 5.351 10 C -0.013 4.013 11 C -0.159 4.159 12 C -0.125 4.125 13 H 0.105 0.895 14 C 0.037 3.963 15 N -0.375 5.375 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.021 4.021 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.165 -4.132 -8.808 20.607 hybrid contribution 1.219 -0.360 0.134 1.278 sum -16.946 -4.492 -8.674 19.560 Atomic orbital electron populations 1.21724 0.93428 1.02195 1.03401 1.22600 0.95940 0.83558 1.00184 1.88043 1.18468 1.26320 1.94970 1.21817 0.83499 0.96398 0.96866 0.89694 1.22276 1.02235 1.03736 0.94791 1.19987 0.80947 0.87923 0.79506 1.90706 1.49551 1.47108 1.52713 1.48470 1.05206 1.26891 1.54529 1.22021 0.94659 0.88758 0.95882 1.22682 0.92618 0.96555 1.04035 1.22579 0.94995 0.96351 0.98616 0.89525 1.20557 0.85796 0.97705 0.92276 1.42301 1.02208 1.83522 1.09508 1.19164 0.83151 1.39236 0.95760 0.91205 1.24747 0.98070 1.02350 0.95720 1.69645 1.32735 1.53836 1.01932 0.86260 0.85012 0.77926 0.76923 1.21240 1.21680 1.21260 1.22495 0.86015 0.94698 0.98914 0.91672 0.91763 0.91013 0.93140 0.93183 0.91209 0.90408 0.91150 0.91526 0.91516 0.89403 0.90261 0.96088 0.95933 0.78194 0.93403 0.90669 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.15 0.38 -0.77 16 2 C 0.05 0.47 6.47 37.15 0.24 0.72 16 3 O -0.36 -4.57 9.54 -54.99 -0.52 -5.10 16 4 C 0.08 0.86 2.46 -27.88 -0.07 0.79 16 5 H 0.09 0.80 7.19 -51.93 -0.37 0.42 16 6 C -0.17 -1.57 9.35 37.16 0.35 -1.22 16 7 C 0.53 7.77 7.21 -10.99 -0.08 7.69 16 8 O -0.53 -9.86 16.85 -14.20 -0.24 -10.10 16 9 N -0.62 -8.19 3.33 -170.51 -0.57 -8.76 16 10 C 0.11 1.47 6.87 -3.06 -0.02 1.45 16 11 C -0.12 -1.69 6.37 -24.89 -0.16 -1.85 16 12 C -0.11 -1.53 3.05 -88.47 -0.27 -1.80 16 13 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.16 2.99 5.71 -4.03 -0.02 2.96 16 15 N -0.73 -17.52 5.55 -59.91 -0.33 -17.85 16 16 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.10 1.19 4.82 -2.53 -0.01 1.17 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 7.77 -51.93 -0.40 -0.04 16 29 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.62 5.97 -51.93 -0.31 0.31 16 32 H 0.07 0.52 7.77 -51.93 -0.40 0.12 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.13 7.91 -51.93 -0.41 0.72 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.41 7.97 -51.93 -0.41 0.00 16 39 H 0.38 9.71 7.67 -40.82 -0.31 9.39 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 0.74 7.18 -51.93 -0.37 0.36 16 42 H 0.08 0.80 7.39 -51.93 -0.38 0.42 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -32.96 341.61 -7.88 -40.83 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.16 Total: 3.81 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 0.09 Total: 2.00 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.17 Total: -53.48 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.76 Total: -15.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.96 -7.88 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752930304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.539 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds