Wall clock time and date at job start Mon Mar 30 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.46911 * 2 1 4 4 C 1.42901 * 114.00024 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46765 * 330.00088 * 4 3 2 6 6 C 1.53003 * 109.47088 * 89.99624 * 4 3 2 7 7 C 1.50700 * 109.46873 * 209.99507 * 4 3 2 8 8 O 1.21272 * 120.00163 * 351.32164 * 7 4 3 9 9 N 1.34775 * 119.99724 * 171.31913 * 7 4 3 10 10 C 1.47020 * 125.64952 * 184.50366 * 9 7 4 11 11 C 1.54334 * 107.26774 * 178.84954 * 10 9 7 12 12 C 1.55152 * 103.02110 * 338.14289 * 11 10 9 13 13 H 1.08999 * 111.00798 * 277.23261 * 12 11 10 14 14 C 1.53005 * 111.00592 * 153.37687 * 12 11 10 15 15 N 1.46508 * 109.46779 * 72.80200 * 14 12 11 16 16 C 1.36929 * 119.99604 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00308 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00049 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00252 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47205 * 60.00477 * 20 18 16 22 22 H 1.48502 * 109.47388 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47314 * 300.00455 * 20 18 16 24 24 C 1.47432 * 125.64922 * 4.81334 * 9 7 4 25 25 H 1.09000 * 109.47740 * 300.00252 * 1 2 3 26 26 H 1.08999 * 109.47389 * 60.00344 * 1 2 3 27 27 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47740 * 239.99748 * 2 1 3 29 29 H 1.09003 * 109.47283 * 119.99150 * 2 1 3 30 30 H 1.09005 * 109.46927 * 65.78604 * 6 4 3 31 31 H 1.08995 * 109.47267 * 185.78924 * 6 4 3 32 32 H 1.08997 * 109.47201 * 305.78918 * 6 4 3 33 33 H 1.09003 * 109.88333 * 298.40167 * 10 9 7 34 34 H 1.09009 * 109.88012 * 59.56472 * 10 9 7 35 35 H 1.09001 * 110.85225 * 219.67531 * 11 10 9 36 36 H 1.08998 * 110.66525 * 96.52582 * 11 10 9 37 37 H 1.08995 * 109.47317 * 192.80343 * 14 12 11 38 38 H 1.08995 * 109.47029 * 312.80724 * 14 12 11 39 39 H 0.96998 * 119.99804 * 0.02562 * 15 14 12 40 40 H 0.97001 * 120.00426 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.36498 * 322.93120 * 24 9 7 42 42 H 1.09005 * 110.36168 * 85.25421 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.8630 0.6018 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8340 2.7267 0.7109 8 8 2.9905 3.5368 1.0320 9 7 5.1320 2.9591 0.9893 10 6 5.6530 4.1009 1.7551 11 6 7.1847 3.9330 1.8429 12 6 7.3844 2.4138 1.5992 13 1 7.2326 1.8474 2.5180 14 6 8.7655 2.1306 1.0047 15 7 9.7881 2.3098 2.0384 16 6 11.1086 2.1089 1.7371 17 1 11.3964 1.8187 0.7373 18 6 12.0777 2.2792 2.7163 19 7 11.7271 2.6333 3.9346 20 14 13.8792 2.0059 2.3052 21 1 14.2889 2.9428 1.2284 22 1 14.7056 2.2495 3.5148 23 1 14.0755 0.6075 1.8456 24 6 6.2652 2.1140 0.5709 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.5905 2.4127 -1.9251 31 1 5.0296 1.4826 -1.4430 32 1 3.5618 0.6340 -1.9846 33 1 5.4088 5.0323 1.2443 34 1 5.2241 4.1017 2.7573 35 1 7.5502 4.2165 2.8299 36 1 7.6807 4.5165 1.0673 37 1 8.7986 1.1059 0.6346 38 1 8.9554 2.8202 0.1823 39 1 9.5296 2.5700 2.9364 40 1 12.4042 2.7520 4.6190 41 1 5.9873 1.0607 0.6090 42 1 6.5903 2.3854 -0.4335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752930304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:45 Heat of formation + Delta-G solvation = -95.979548 kcal Electronic energy + Delta-G solvation = -20976.902580 eV Core-core repulsion = 17763.299525 eV Total energy + Delta-G solvation = -3213.603055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40184 -39.41043 -38.37512 -36.39253 -34.09280 -33.39090 -31.91054 -31.00173 -30.06200 -27.14486 -25.86002 -24.31765 -23.79918 -23.16688 -21.40682 -20.45740 -19.12162 -18.44068 -17.84547 -17.20613 -16.89259 -16.54750 -16.39904 -15.58001 -15.30791 -14.93168 -14.82727 -14.58801 -14.34299 -14.01347 -13.93610 -13.69580 -13.37117 -13.19724 -12.98458 -12.89285 -12.84640 -12.69069 -12.31837 -12.23447 -12.07902 -12.04947 -11.77641 -11.67340 -11.60140 -11.01380 -10.87753 -10.51710 -9.75703 -8.94962 -7.91744 -5.19681 1.46023 1.50670 1.52873 1.58851 1.64287 2.58861 2.80194 3.34486 3.41415 3.48603 3.79305 3.81927 3.90182 4.00621 4.19152 4.20301 4.31405 4.32387 4.41120 4.48448 4.56567 4.60906 4.64566 4.75230 4.80294 4.84563 4.89375 4.98401 5.01821 5.06614 5.17598 5.23792 5.25263 5.27393 5.42846 5.54460 6.10930 6.30501 6.41615 7.02825 7.37609 8.14814 8.36109 9.31669 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036639 B = 0.003199 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.032093 B = 8749.583920 C = 9096.027285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.392 6.392 4 C 0.077 3.923 5 H 0.110 0.890 6 C -0.167 4.167 7 C 0.523 3.477 8 O -0.577 6.577 9 N -0.612 5.612 10 C 0.111 3.889 11 C -0.114 4.114 12 C -0.099 4.099 13 H 0.078 0.922 14 C 0.164 3.836 15 N -0.745 5.745 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.971 3.029 21 H -0.278 1.278 22 H -0.299 1.299 23 H -0.277 1.277 24 C 0.109 3.891 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.104 0.896 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.632 -6.404 -10.781 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.016 3.984 5 H 0.128 0.872 6 C -0.224 4.224 7 C 0.312 3.688 8 O -0.456 6.456 9 N -0.347 5.347 10 C -0.011 4.011 11 C -0.152 4.152 12 C -0.119 4.119 13 H 0.097 0.903 14 C 0.038 3.962 15 N -0.388 5.388 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.226 1.226 23 H -0.203 1.203 24 C -0.014 4.014 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.122 0.878 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.169 -5.880 -10.759 21.919 hybrid contribution 1.156 0.169 0.691 1.358 sum -17.013 -5.711 -10.068 20.577 Atomic orbital electron populations 1.21767 0.93023 1.03509 1.02451 1.22857 0.96400 0.82160 1.01589 1.88017 1.19219 1.28744 1.95197 1.21929 0.83424 0.95009 0.98006 0.87236 1.22269 1.03055 1.03975 0.93137 1.20749 0.80554 0.88627 0.78892 1.90677 1.50884 1.49055 1.54975 1.48515 1.05468 1.26752 1.53941 1.21938 0.94103 0.89259 0.95817 1.22576 0.92873 0.96526 1.03275 1.22411 0.94114 0.96310 0.99044 0.90315 1.20709 0.86123 0.98265 0.91118 1.42537 1.02561 1.83379 1.10328 1.19604 0.84609 1.37239 0.95867 0.90349 1.25538 1.02109 1.03435 0.95819 1.69803 1.33515 1.55978 1.02851 0.85249 0.80235 0.78164 0.76341 1.20450 1.22569 1.20321 1.22571 0.84180 0.96037 0.98564 0.93157 0.92192 0.88543 0.90937 0.92412 0.92760 0.88954 0.88984 0.91508 0.92114 0.90730 0.90306 0.94913 0.95315 0.79421 0.94135 0.87818 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.70 6.47 71.98 0.47 1.17 16 3 O -0.39 -9.45 9.54 -130.09 -1.24 -10.69 16 4 C 0.08 1.58 2.46 29.85 0.07 1.65 16 5 H 0.11 1.66 7.19 -2.39 -0.02 1.64 16 6 C -0.17 -2.51 9.35 71.98 0.67 -1.84 16 7 C 0.52 14.81 7.21 87.66 0.63 15.44 16 8 O -0.58 -21.90 16.85 15.89 0.27 -21.63 16 9 N -0.61 -15.32 3.33 -811.75 -2.70 -18.02 16 10 C 0.11 2.95 6.87 86.73 0.60 3.55 16 11 C -0.11 -3.14 6.37 31.78 0.20 -2.94 16 12 C -0.10 -2.69 3.05 -9.40 -0.03 -2.72 16 13 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.16 5.62 5.71 86.38 0.49 6.12 16 15 N -0.75 -35.20 5.55 -343.44 -1.91 -37.11 16 16 C -0.24 -12.82 9.99 84.04 0.84 -11.98 16 17 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 18 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 19 N -0.97 -58.08 13.06 21.65 0.28 -57.80 16 20 Si 0.97 44.81 29.55 68.60 2.03 46.83 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 C 0.11 2.19 4.82 86.85 0.42 2.61 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.79 7.77 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.09 1.10 5.97 -2.39 -0.01 1.08 16 32 H 0.09 1.00 7.77 -2.39 -0.02 0.98 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.17 7.91 -2.39 -0.02 2.15 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.03 0.97 7.97 -2.39 -0.02 0.96 16 39 H 0.37 19.02 7.67 -92.71 -0.71 18.31 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.10 1.56 7.18 -2.39 -0.02 1.55 16 42 H 0.09 1.62 7.39 -2.38 -0.02 1.60 16 Total: -1.00 -71.69 341.61 2.59 -69.11 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.28 Total: 23.41 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.57 Total: 5.90 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -4.32 Total: -112.93 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.97 Total: -32.32 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.69 2.59 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752930304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.872 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds