Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00276 * 2 1 4 4 H 1.08000 * 120.00004 * 200.36228 * 3 2 1 5 5 C 1.38816 * 120.00083 * 20.35504 * 3 2 1 6 6 N 1.31620 * 119.99928 * 14.99393 * 5 3 2 7 7 Si 1.86802 * 119.99812 * 194.98804 * 5 3 2 8 8 H 1.48501 * 109.46705 * 85.00926 * 7 5 3 9 9 H 1.48502 * 109.46964 * 205.00476 * 7 5 3 10 10 H 1.48498 * 109.47407 * 325.00790 * 7 5 3 11 11 C 1.46501 * 119.99607 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46874 * 270.00281 * 11 2 1 13 13 N 1.46500 * 109.47215 * 180.02562 * 12 11 2 14 14 C 1.34771 * 120.00318 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00422 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47319 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46779 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47341 * 59.99938 * 18 17 16 20 20 O 1.42899 * 109.47232 * 59.99566 * 19 18 17 21 21 C 1.53003 * 109.46880 * 299.99762 * 19 18 17 22 22 C 1.52997 * 109.46990 * 59.99914 * 16 14 13 23 23 H 1.08994 * 109.47212 * 275.10396 * 1 2 3 24 24 H 1.09004 * 109.46461 * 35.10046 * 1 2 3 25 25 H 1.09007 * 109.47188 * 155.09495 * 1 2 3 26 26 H 0.96996 * 119.99891 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47275 * 150.00423 * 11 2 1 28 28 H 1.08999 * 109.47749 * 29.99668 * 11 2 1 29 29 H 1.08999 * 109.47486 * 59.99690 * 12 11 2 30 30 H 1.09004 * 109.47084 * 299.99905 * 12 11 2 31 31 H 0.96999 * 119.99969 * 0.02562 * 13 12 11 32 32 H 1.09004 * 109.46828 * 300.00362 * 16 14 13 33 33 H 1.08999 * 109.47054 * 59.99838 * 17 16 14 34 34 H 1.08999 * 109.46432 * 300.00024 * 17 16 14 35 35 H 1.09004 * 109.46987 * 299.99661 * 18 17 16 36 36 H 1.09001 * 109.46399 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47254 * 180.02562 * 19 18 17 38 38 H 0.96701 * 113.99806 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46699 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47278 * 300.00173 * 21 19 18 41 41 H 1.08993 * 109.47717 * 300.00301 * 22 16 14 42 42 H 1.09004 * 109.46969 * 60.00535 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1791 1.2150 -0.3254 5 6 1.5207 2.3505 0.4182 6 7 0.3876 2.2837 1.0844 7 14 2.2827 4.0126 0.0354 8 1 1.8684 4.4458 -1.3232 9 1 1.8225 5.0099 1.0348 10 1 3.7626 3.9032 0.0904 11 6 2.1974 -1.2688 0.0006 12 6 2.4523 -1.7098 1.4433 13 7 3.1853 -2.9783 1.4440 14 6 3.5226 -3.5611 2.6114 15 8 3.2191 -3.0357 3.6615 16 6 4.2761 -4.8662 2.6121 17 6 4.5311 -5.3072 4.0549 18 6 5.2966 -6.6319 4.0554 19 6 6.6335 -6.4488 3.3343 20 8 7.4053 -5.4523 4.0075 21 6 6.3784 -6.0078 1.8915 22 6 5.6127 -4.6838 1.8902 23 1 -0.3633 0.0914 1.0235 24 1 -0.3632 0.8408 -0.5910 25 1 -0.3634 -0.9322 -0.4328 26 1 -0.0518 3.0975 1.3769 27 1 3.1499 -1.1388 -0.5132 28 1 1.6084 -2.0287 -0.5128 29 1 1.4999 -1.8398 1.9572 30 1 3.0414 -0.9500 1.9569 31 1 3.4284 -3.3984 0.6042 32 1 3.6868 -5.6262 2.0990 33 1 3.5787 -5.4372 4.5688 34 1 5.1202 -4.5472 4.5682 35 1 4.7078 -7.3920 3.5419 36 1 5.4786 -6.9458 5.0833 37 1 7.1786 -7.3927 3.3343 38 1 8.2679 -5.2840 3.6042 39 1 7.3308 -5.8778 1.3777 40 1 5.7896 -6.7679 1.3780 41 1 5.4307 -4.3699 0.8625 42 1 6.2020 -3.9239 2.4033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753047607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -85.557849 kcal Electronic energy + Delta-G solvation = -21137.159339 eV Core-core repulsion = 17924.008203 eV Total energy + Delta-G solvation = -3213.151136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13087 -38.42431 -36.05010 -35.05382 -34.08787 -31.44790 -30.92490 -30.28339 -27.90139 -25.85863 -24.04511 -22.93604 -22.51286 -20.61837 -20.35374 -19.54629 -17.23918 -16.88735 -16.67334 -16.00434 -15.40295 -15.10349 -14.70838 -14.58612 -14.03050 -13.62141 -13.54576 -13.26533 -13.06987 -12.58779 -12.45781 -12.31266 -12.13566 -12.07979 -11.47406 -11.25704 -11.17401 -10.86760 -10.82933 -10.66195 -10.57877 -10.34939 -10.26153 -10.02487 -9.97792 -9.87284 -9.35374 -8.58495 -8.51866 -6.83215 -5.73353 -3.18421 2.98082 3.39377 3.45008 3.47233 3.55526 4.02204 4.44121 4.48664 4.52276 4.65307 4.91982 5.01008 5.10088 5.14847 5.29225 5.31325 5.41152 5.52787 5.57297 5.65104 5.75632 5.79495 5.89958 5.95980 6.00848 6.06355 6.15456 6.29228 6.41901 6.70911 6.74168 6.79510 7.02820 7.35935 7.43662 7.71647 7.81002 7.90037 8.36980 8.61709 9.21589 9.84563 10.32012 11.31901 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031214 B = 0.003469 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.830222 B = 8068.680152 C = 8311.614490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.145 3.855 12 C 0.094 3.906 13 N -0.726 5.726 14 C 0.509 3.491 15 O -0.541 6.541 16 C -0.105 4.105 17 C -0.096 4.096 18 C -0.113 4.113 19 C 0.103 3.897 20 O -0.561 6.561 21 C -0.150 4.150 22 C -0.106 4.106 23 H 0.030 0.970 24 H 0.045 0.955 25 H -0.001 1.001 26 H 0.254 0.746 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.393 0.607 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.374 0.626 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -19.970 -0.233 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.377 5.377 14 C 0.294 3.706 15 O -0.418 6.418 16 C -0.127 4.127 17 C -0.134 4.134 18 C -0.150 4.150 19 C 0.044 3.956 20 O -0.366 6.366 21 C -0.188 4.188 22 C -0.144 4.144 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.226 0.774 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.334 -19.382 0.963 21.986 hybrid contribution 0.889 0.732 -0.884 1.452 sum 11.223 -18.651 0.078 21.767 Atomic orbital electron populations 1.20847 0.82185 0.95640 0.99644 1.43950 1.02061 1.00389 1.85512 1.19225 0.97157 0.84825 1.37834 0.91142 1.25009 0.97840 0.98521 0.98209 1.70088 1.18778 1.26975 1.39080 0.86242 0.78677 0.83844 0.77583 1.21408 1.21694 1.20511 1.20983 0.96279 0.88853 0.92276 1.22493 0.95715 0.83036 1.01926 1.46214 1.58303 1.25296 1.07902 1.20598 0.79527 0.86381 0.84054 1.90705 1.54660 1.65028 1.31438 1.21346 0.96709 0.95542 0.99054 1.21246 1.00656 0.96958 0.94519 1.21581 0.94157 0.98188 1.01071 1.21801 0.92586 0.90159 0.91046 1.86578 1.32871 1.60511 1.56653 1.22241 1.00974 0.98280 0.97294 1.21414 0.94860 0.97960 1.00186 0.95127 0.93602 0.98258 0.93625 0.93382 0.94039 0.92332 0.91455 0.77377 0.89105 0.91382 0.90244 0.90740 0.91091 0.92964 0.77893 0.91448 0.90854 0.91464 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 9.02 59.85 0.54 4.56 16 2 N -0.60 -15.10 2.93 -181.11 -0.53 -15.63 16 3 C -0.26 -7.24 9.68 -15.06 -0.15 -7.38 16 4 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 5 C 0.00 0.08 5.06 -17.43 -0.09 0.00 16 6 N -0.90 -26.82 10.67 55.49 0.59 -26.23 16 7 Si 0.91 22.12 29.58 -169.99 -5.03 17.09 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.14 2.89 5.82 -4.04 -0.02 2.87 16 12 C 0.09 1.88 6.00 -4.04 -0.02 1.86 16 13 N -0.73 -11.21 5.45 -60.29 -0.33 -11.53 16 14 C 0.51 8.28 7.15 -10.99 -0.08 8.20 16 15 O -0.54 -11.48 15.98 5.56 0.09 -11.39 16 16 C -0.10 -1.20 2.53 -91.77 -0.23 -1.43 16 17 C -0.10 -1.15 4.35 -26.73 -0.12 -1.27 16 18 C -0.11 -0.99 5.66 -26.73 -0.15 -1.15 16 19 C 0.10 0.81 3.77 -26.73 -0.10 0.71 16 20 O -0.56 -5.24 11.97 -35.23 -0.42 -5.66 16 21 C -0.15 -1.05 5.63 -26.76 -0.15 -1.20 16 22 C -0.11 -1.01 4.95 -26.76 -0.13 -1.15 16 23 H 0.03 0.83 7.40 -51.93 -0.38 0.44 16 24 H 0.05 1.21 7.21 -51.93 -0.37 0.84 16 25 H 0.00 -0.02 7.84 -51.92 -0.41 -0.43 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.39 4.65 7.89 -40.82 -0.32 4.32 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.08 1.16 7.64 -51.93 -0.40 0.77 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.37 2.01 9.08 45.56 0.41 2.43 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 42 H 0.07 0.86 7.68 -51.93 -0.40 0.47 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -34.17 335.13 -7.72 -41.89 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.44 Total: 1.81 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.70 Total: 4.61 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.27 Total: -53.39 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.33 Total: -17.06 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.17 -7.72 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753047607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.673 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds