Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00276 * 2 1 4 4 H 1.08000 * 120.00004 * 200.36228 * 3 2 1 5 5 C 1.38816 * 120.00083 * 20.35504 * 3 2 1 6 6 N 1.31620 * 119.99928 * 14.99393 * 5 3 2 7 7 Si 1.86802 * 119.99812 * 194.98804 * 5 3 2 8 8 H 1.48501 * 109.46705 * 85.00926 * 7 5 3 9 9 H 1.48502 * 109.46964 * 205.00476 * 7 5 3 10 10 H 1.48498 * 109.47407 * 325.00790 * 7 5 3 11 11 C 1.46501 * 119.99607 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46874 * 270.00281 * 11 2 1 13 13 N 1.46500 * 109.47215 * 180.02562 * 12 11 2 14 14 C 1.34771 * 120.00318 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00422 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47319 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46779 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47341 * 59.99938 * 18 17 16 20 20 O 1.42899 * 109.47232 * 59.99566 * 19 18 17 21 21 C 1.53003 * 109.46880 * 299.99762 * 19 18 17 22 22 C 1.52997 * 109.46990 * 59.99914 * 16 14 13 23 23 H 1.08994 * 109.47212 * 275.10396 * 1 2 3 24 24 H 1.09004 * 109.46461 * 35.10046 * 1 2 3 25 25 H 1.09007 * 109.47188 * 155.09495 * 1 2 3 26 26 H 0.96996 * 119.99891 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47275 * 150.00423 * 11 2 1 28 28 H 1.08999 * 109.47749 * 29.99668 * 11 2 1 29 29 H 1.08999 * 109.47486 * 59.99690 * 12 11 2 30 30 H 1.09004 * 109.47084 * 299.99905 * 12 11 2 31 31 H 0.96999 * 119.99969 * 0.02562 * 13 12 11 32 32 H 1.09004 * 109.46828 * 300.00362 * 16 14 13 33 33 H 1.08999 * 109.47054 * 59.99838 * 17 16 14 34 34 H 1.08999 * 109.46432 * 300.00024 * 17 16 14 35 35 H 1.09004 * 109.46987 * 299.99661 * 18 17 16 36 36 H 1.09001 * 109.46399 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47254 * 180.02562 * 19 18 17 38 38 H 0.96701 * 113.99806 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46699 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47278 * 300.00173 * 21 19 18 41 41 H 1.08993 * 109.47717 * 300.00301 * 22 16 14 42 42 H 1.09004 * 109.46969 * 60.00535 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1791 1.2150 -0.3254 5 6 1.5207 2.3505 0.4182 6 7 0.3876 2.2837 1.0844 7 14 2.2827 4.0126 0.0354 8 1 1.8684 4.4458 -1.3232 9 1 1.8225 5.0099 1.0348 10 1 3.7626 3.9032 0.0904 11 6 2.1974 -1.2688 0.0006 12 6 2.4523 -1.7098 1.4433 13 7 3.1853 -2.9783 1.4440 14 6 3.5226 -3.5611 2.6114 15 8 3.2191 -3.0357 3.6615 16 6 4.2761 -4.8662 2.6121 17 6 4.5311 -5.3072 4.0549 18 6 5.2966 -6.6319 4.0554 19 6 6.6335 -6.4488 3.3343 20 8 7.4053 -5.4523 4.0075 21 6 6.3784 -6.0078 1.8915 22 6 5.6127 -4.6838 1.8902 23 1 -0.3633 0.0914 1.0235 24 1 -0.3632 0.8408 -0.5910 25 1 -0.3634 -0.9322 -0.4328 26 1 -0.0518 3.0975 1.3769 27 1 3.1499 -1.1388 -0.5132 28 1 1.6084 -2.0287 -0.5128 29 1 1.4999 -1.8398 1.9572 30 1 3.0414 -0.9500 1.9569 31 1 3.4284 -3.3984 0.6042 32 1 3.6868 -5.6262 2.0990 33 1 3.5787 -5.4372 4.5688 34 1 5.1202 -4.5472 4.5682 35 1 4.7078 -7.3920 3.5419 36 1 5.4786 -6.9458 5.0833 37 1 7.1786 -7.3927 3.3343 38 1 8.2679 -5.2840 3.6042 39 1 7.3308 -5.8778 1.3777 40 1 5.7896 -6.7679 1.3780 41 1 5.4307 -4.3699 0.8625 42 1 6.2020 -3.9239 2.4033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753047607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -111.802599 kcal Electronic energy + Delta-G solvation = -21138.297397 eV Core-core repulsion = 17924.008203 eV Total energy + Delta-G solvation = -3214.289194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25071 -39.38890 -37.86232 -35.89120 -35.73805 -33.32106 -31.77980 -31.21883 -29.49080 -27.93932 -25.50778 -23.97149 -23.54026 -22.39457 -21.39932 -20.56152 -18.82938 -18.19878 -17.65535 -17.16757 -16.70815 -16.66426 -16.19542 -15.65603 -15.34033 -15.30494 -14.90841 -14.40823 -14.27206 -14.15370 -13.85690 -13.20580 -13.17946 -13.04733 -12.99845 -12.80718 -12.66764 -12.47797 -12.26683 -12.10720 -12.01258 -11.91079 -11.78237 -11.51799 -11.13458 -10.79223 -10.67357 -10.50839 -10.06476 -8.90407 -7.86725 -5.34318 1.45916 1.47154 1.55643 1.66821 2.21178 2.52083 3.27971 3.45483 3.60061 3.77440 3.80608 3.92319 4.15083 4.21463 4.25389 4.28262 4.37223 4.44286 4.51914 4.60615 4.64045 4.82088 4.83843 4.97555 5.04698 5.10059 5.11436 5.16040 5.26626 5.28438 5.29842 5.34506 5.46393 5.53999 5.61491 5.69734 6.28307 6.63397 7.01118 7.10505 7.33552 7.82173 8.23838 9.17190 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031214 B = 0.003469 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.830222 B = 8068.680152 C = 8311.614490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.615 5.615 3 C -0.269 4.269 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.280 1.280 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.148 3.852 12 C 0.115 3.885 13 N -0.709 5.709 14 C 0.503 3.497 15 O -0.600 6.600 16 C -0.093 4.093 17 C -0.095 4.095 18 C -0.110 4.110 19 C 0.098 3.902 20 O -0.589 6.589 21 C -0.142 4.142 22 C -0.105 4.105 23 H -0.002 1.002 24 H 0.021 0.979 25 H 0.039 0.961 26 H 0.248 0.752 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.024 0.976 31 H 0.416 0.584 32 H 0.127 0.873 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.389 0.611 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.955 -22.484 -2.530 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.338 5.338 3 C -0.399 4.399 4 H 0.095 0.905 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.206 1.206 9 H -0.225 1.225 10 H -0.194 1.194 11 C 0.021 3.979 12 C -0.013 4.013 13 N -0.361 5.361 14 C 0.291 3.709 15 O -0.480 6.480 16 C -0.114 4.114 17 C -0.133 4.133 18 C -0.147 4.147 19 C 0.040 3.960 20 O -0.397 6.397 21 C -0.179 4.179 22 C -0.143 4.143 23 H 0.016 0.984 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.254 0.746 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.238 0.762 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.098 -21.953 -1.392 25.105 hybrid contribution 0.381 1.443 -0.135 1.498 sum 12.479 -20.510 -1.526 24.057 Atomic orbital electron populations 1.20609 0.82437 0.96558 0.97539 1.44215 1.02394 1.01660 1.85505 1.19615 0.97469 0.86038 1.36738 0.90511 1.25826 0.98585 1.02042 0.98618 1.70269 1.20348 1.27305 1.40672 0.85223 0.78296 0.79397 0.77170 1.20634 1.22493 1.19362 1.21143 0.97192 0.87565 0.92049 1.21906 0.94047 0.84075 1.01249 1.45920 1.57415 1.23645 1.09150 1.21615 0.78676 0.87617 0.83034 1.90685 1.56870 1.66891 1.33584 1.21382 0.97642 0.92976 0.99374 1.21191 0.99684 0.97992 0.94481 1.21621 0.94927 0.96543 1.01651 1.21952 0.91961 0.90900 0.91214 1.86553 1.34148 1.61259 1.57764 1.22222 1.01806 0.96913 0.96973 1.21435 0.93377 0.99222 1.00218 0.98407 0.96015 0.94295 0.94280 0.91611 0.90492 0.95150 0.95746 0.74617 0.85556 0.93094 0.94009 0.87995 0.91632 0.90512 0.76173 0.89585 0.88524 0.89775 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.69 9.02 127.77 1.15 9.84 16 2 N -0.61 -30.93 2.93 -726.92 -2.13 -33.06 16 3 C -0.27 -14.89 9.68 84.04 0.81 -14.08 16 4 H 0.08 4.07 7.86 -2.91 -0.02 4.05 16 5 C -0.06 -3.19 5.06 84.86 0.43 -2.76 16 6 N -0.94 -57.37 10.67 21.65 0.23 -57.14 16 7 Si 0.97 45.93 29.58 68.60 2.03 47.96 16 8 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 9 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 C 0.15 5.63 5.82 86.38 0.50 6.13 16 12 C 0.11 4.62 6.00 86.38 0.52 5.14 16 13 N -0.71 -20.99 5.45 -463.05 -2.52 -23.51 16 14 C 0.50 16.29 7.15 87.66 0.63 16.92 16 15 O -0.60 -26.69 15.98 -3.04 -0.05 -26.74 16 16 C -0.09 -1.95 2.53 -11.54 -0.03 -1.98 16 17 C -0.10 -2.27 4.35 30.60 0.13 -2.14 16 18 C -0.11 -1.71 5.66 30.59 0.17 -1.53 16 19 C 0.10 1.24 3.77 30.59 0.12 1.35 16 20 O -0.59 -10.28 11.97 -148.98 -1.78 -12.07 16 21 C -0.14 -1.37 5.63 30.58 0.17 -1.20 16 22 C -0.10 -1.71 4.95 30.58 0.15 -1.55 16 23 H 0.00 -0.14 7.40 -2.39 -0.02 -0.15 16 24 H 0.02 1.15 7.21 -2.39 -0.02 1.13 16 25 H 0.04 1.60 7.84 -2.38 -0.02 1.58 16 26 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 27 H 0.07 2.31 8.03 -2.39 -0.02 2.29 16 28 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.42 8.46 7.89 -92.71 -0.73 7.73 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.04 1.29 7.64 -2.39 -0.02 1.27 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.39 3.60 9.08 -74.06 -0.67 2.92 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 1.09 7.56 -2.39 -0.02 1.07 16 42 H 0.05 1.07 7.68 -2.39 -0.02 1.05 16 Total: -1.00 -78.85 335.13 0.14 -78.71 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -0.40 Total: 11.70 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 4.76 Total: 14.14 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.42 Total: -113.71 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.83 Total: -38.80 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.85 0.14 -78.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753047607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.089 kcal (2) G-P(sol) polarization free energy of solvation -78.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds