Wall clock time and date at job start Mon Mar 30 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.46944 * 2 1 4 4 C 1.36941 * 119.99659 * 275.30837 * 3 2 1 5 5 H 1.07999 * 120.00470 * 37.58304 * 4 3 2 6 6 C 1.38820 * 119.99698 * 217.57991 * 4 3 2 7 7 N 1.31622 * 119.99913 * 21.42179 * 6 4 3 8 8 Si 1.86804 * 119.99836 * 201.42685 * 6 4 3 9 9 H 1.48494 * 109.47180 * 60.00018 * 8 6 4 10 10 H 1.48505 * 109.46844 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46872 * 299.99661 * 8 6 4 12 12 C 1.46497 * 120.00412 * 95.31013 * 3 2 1 13 13 C 1.52997 * 109.46888 * 270.00048 * 12 3 2 14 14 N 1.46506 * 109.47111 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99986 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00173 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99806 * 180.02562 * 15 14 13 18 18 C 1.53166 * 109.54772 * 60.43779 * 17 15 14 19 19 C 1.53089 * 109.16810 * 176.84591 * 18 17 15 20 20 O 1.42907 * 109.41758 * 302.39722 * 19 18 17 21 21 C 1.42899 * 114.09668 * 61.14807 * 20 19 18 22 22 C 1.53092 * 109.41764 * 298.84536 * 21 20 19 23 23 H 1.09005 * 109.47095 * 60.00239 * 1 2 3 24 24 H 1.08999 * 109.46961 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47457 * 300.00294 * 1 2 3 26 26 H 1.09004 * 109.47154 * 240.00074 * 2 1 3 27 27 H 1.08996 * 109.47062 * 119.99889 * 2 1 3 28 28 H 0.97006 * 119.99337 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47694 * 150.00118 * 12 3 2 30 30 H 1.09003 * 109.47049 * 29.99591 * 12 3 2 31 31 H 1.09003 * 109.47322 * 59.99619 * 13 12 3 32 32 H 1.08995 * 109.47524 * 299.99503 * 13 12 3 33 33 H 0.96994 * 119.99921 * 0.02562 * 14 13 12 34 34 H 1.09001 * 109.60970 * 300.21251 * 17 15 14 35 35 H 1.08999 * 109.52800 * 296.75888 * 18 17 15 36 36 H 1.09011 * 109.52473 * 56.94280 * 18 17 15 37 37 H 1.08994 * 109.48616 * 182.41027 * 19 18 17 38 38 H 1.09010 * 109.47643 * 62.37451 * 19 18 17 39 39 H 1.09005 * 109.48210 * 178.86530 * 21 20 19 40 40 H 1.09002 * 109.49324 * 58.83618 * 21 20 19 41 41 H 1.08997 * 109.52319 * 297.70285 * 22 21 20 42 42 H 1.09002 * 109.51945 * 177.51195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0633 -1.1809 5 1 1.4104 1.9279 -1.9628 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2795 -2.6586 9 1 1.9627 5.1785 -2.3346 10 1 4.3622 5.0607 -2.6670 11 1 2.8844 3.6725 -3.9967 12 6 2.3731 2.0328 1.2632 13 6 1.1425 2.7383 1.8364 14 7 1.4971 3.3894 3.1000 15 6 0.5644 4.0759 3.7894 16 8 -0.5684 4.1551 3.3635 17 6 0.9295 4.7462 5.0889 18 6 2.0292 5.7827 4.8397 19 6 2.3378 6.5130 6.1493 20 8 1.1442 7.1215 6.6466 21 6 0.0968 6.1954 6.9425 22 6 -0.3018 5.4526 5.6646 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 5.0491 3.4028 -0.7835 29 1 3.1615 2.7643 1.0859 30 1 2.7254 1.2835 1.9721 31 1 0.3540 2.0069 2.0137 32 1 0.7901 3.4877 1.1276 33 1 2.4032 3.3264 3.4404 34 1 1.2862 3.9993 5.7981 35 1 2.9283 5.2812 4.4817 36 1 1.6902 6.5012 4.0932 37 1 3.0894 7.2813 5.9688 38 1 2.7151 5.8002 6.8827 39 1 -0.7659 6.7351 7.3333 40 1 0.4446 5.4785 7.6862 41 1 -0.6878 6.1643 4.9349 42 1 -1.0697 4.7147 5.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753076828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:32 Heat of formation + Delta-G solvation = -80.827759 kcal Electronic energy + Delta-G solvation = -21431.014808 eV Core-core repulsion = 18218.068784 eV Total energy + Delta-G solvation = -3212.946024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14913 -38.47907 -36.33139 -34.12954 -33.70163 -31.90846 -31.24797 -29.65495 -27.73435 -25.75746 -24.17373 -23.63304 -21.96745 -20.92787 -20.35944 -19.64152 -17.32806 -16.58010 -16.20485 -15.97968 -15.34898 -15.23679 -14.93655 -14.60573 -14.17133 -13.85113 -13.73592 -13.52683 -13.00288 -12.65419 -12.44761 -12.39462 -12.02949 -11.61542 -11.51269 -11.46827 -11.13862 -10.88296 -10.77016 -10.66016 -10.57504 -10.54711 -10.10402 -9.95573 -9.90187 -9.80729 -9.31215 -8.58708 -8.45906 -6.64883 -5.86268 -3.44872 2.92621 3.34064 3.39842 3.44154 3.52631 3.73481 4.44238 4.51619 4.64963 4.71850 4.84109 5.02927 5.17326 5.25777 5.27948 5.45273 5.46227 5.50295 5.52814 5.68546 5.87236 5.97230 5.99270 6.10352 6.14431 6.18706 6.36489 6.40644 6.48822 6.66618 6.87257 6.89549 7.00412 7.00762 7.14542 7.51145 7.77752 7.92037 8.45451 8.58214 9.12211 9.74050 10.32086 11.13934 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.004649 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.173145 B = 6021.305268 C = 6837.025802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.262 4.262 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.719 5.719 15 C 0.511 3.489 16 O -0.547 6.547 17 C -0.110 4.110 18 C -0.149 4.149 19 C 0.063 3.937 20 O -0.384 6.384 21 C 0.061 3.939 22 C -0.135 4.135 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.255 0.745 29 H 0.098 0.902 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 3.218 14.609 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.392 4.392 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.370 5.370 15 C 0.296 3.704 16 O -0.425 6.425 17 C -0.131 4.131 18 C -0.187 4.187 19 C -0.013 4.013 20 O -0.303 6.303 21 C -0.016 4.016 22 C -0.173 4.173 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.430 3.512 14.264 15.085 hybrid contribution 0.387 0.335 -0.616 0.801 sum -3.043 3.847 13.647 14.502 Atomic orbital electron populations 1.22389 0.99921 0.99076 1.01392 1.20876 0.91762 0.86975 0.98876 1.43607 1.76072 1.08289 1.02090 1.18991 1.04802 1.21379 0.94005 0.92122 1.25175 0.94115 1.01163 0.98123 1.69989 1.03137 1.37357 1.42539 0.86468 0.76986 0.82311 0.81656 1.20786 1.21545 1.20563 1.21051 0.94579 0.96910 0.86412 1.22457 1.01025 0.96526 0.82837 1.46153 1.13056 1.53213 1.24539 1.20458 0.85402 0.78780 0.85736 1.90678 1.20695 1.61172 1.69943 1.21375 0.97723 0.98079 0.95942 1.22211 0.98548 0.98503 0.99442 1.22581 0.87296 0.97706 0.93753 1.87936 1.23642 1.33980 1.84741 1.22628 0.90749 0.92568 0.95608 1.22007 0.96859 1.00410 0.98055 0.93099 0.94440 0.93711 0.93565 0.94765 0.93464 0.88421 0.95386 0.93090 0.91836 0.77049 0.88734 0.89970 0.90277 0.88509 0.92968 0.88657 0.93191 0.90127 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.15 0.38 -2.75 16 2 C 0.14 2.96 6.44 -4.04 -0.03 2.93 16 3 N -0.58 -14.07 2.43 -173.24 -0.42 -14.49 16 4 C -0.26 -7.04 9.45 -15.05 -0.14 -7.18 16 5 H 0.06 1.64 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.39 4.95 -17.43 -0.09 0.31 16 7 N -0.89 -24.58 11.47 55.49 0.64 -23.94 16 8 Si 0.90 21.36 29.60 -169.99 -5.03 16.32 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.14 3.05 5.45 -4.05 -0.02 3.02 16 13 C 0.10 1.97 6.00 -4.04 -0.02 1.94 16 14 N -0.72 -11.85 5.47 -60.29 -0.33 -12.18 16 15 C 0.51 8.41 7.16 -10.98 -0.08 8.34 16 16 O -0.55 -11.26 15.97 5.56 0.09 -11.18 16 17 C -0.11 -1.31 2.61 -91.59 -0.24 -1.55 16 18 C -0.15 -1.61 5.30 -26.60 -0.14 -1.75 16 19 C 0.06 0.59 6.84 37.20 0.25 0.85 16 20 O -0.38 -4.37 10.77 -35.23 -0.38 -4.75 16 21 C 0.06 0.59 6.84 37.20 0.25 0.84 16 22 C -0.14 -1.57 4.73 -26.59 -0.13 -1.70 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.84 6.64 -51.93 -0.34 0.50 16 26 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16 30 H 0.03 0.57 7.86 -51.93 -0.41 0.17 16 31 H 0.05 1.06 6.64 -51.93 -0.34 0.72 16 32 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 5.46 7.99 -40.82 -0.33 5.13 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 36 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -31.07 336.95 -7.49 -38.56 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.13 Total: 3.28 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 0.00 Total: 3.30 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.11 Total: -50.61 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.29 Total: -15.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.07 -7.49 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753076828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.271 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds