Wall clock time and date at job start Mon Mar 30 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.46944 * 2 1 4 4 C 1.36941 * 119.99659 * 275.30837 * 3 2 1 5 5 H 1.07999 * 120.00470 * 37.58304 * 4 3 2 6 6 C 1.38820 * 119.99698 * 217.57991 * 4 3 2 7 7 N 1.31622 * 119.99913 * 21.42179 * 6 4 3 8 8 Si 1.86804 * 119.99836 * 201.42685 * 6 4 3 9 9 H 1.48494 * 109.47180 * 60.00018 * 8 6 4 10 10 H 1.48505 * 109.46844 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46872 * 299.99661 * 8 6 4 12 12 C 1.46497 * 120.00412 * 95.31013 * 3 2 1 13 13 C 1.52997 * 109.46888 * 270.00048 * 12 3 2 14 14 N 1.46506 * 109.47111 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99986 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00173 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99806 * 180.02562 * 15 14 13 18 18 C 1.53166 * 109.54772 * 60.43779 * 17 15 14 19 19 C 1.53089 * 109.16810 * 176.84591 * 18 17 15 20 20 O 1.42907 * 109.41758 * 302.39722 * 19 18 17 21 21 C 1.42899 * 114.09668 * 61.14807 * 20 19 18 22 22 C 1.53092 * 109.41764 * 298.84536 * 21 20 19 23 23 H 1.09005 * 109.47095 * 60.00239 * 1 2 3 24 24 H 1.08999 * 109.46961 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47457 * 300.00294 * 1 2 3 26 26 H 1.09004 * 109.47154 * 240.00074 * 2 1 3 27 27 H 1.08996 * 109.47062 * 119.99889 * 2 1 3 28 28 H 0.97006 * 119.99337 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47694 * 150.00118 * 12 3 2 30 30 H 1.09003 * 109.47049 * 29.99591 * 12 3 2 31 31 H 1.09003 * 109.47322 * 59.99619 * 13 12 3 32 32 H 1.08995 * 109.47524 * 299.99503 * 13 12 3 33 33 H 0.96994 * 119.99921 * 0.02562 * 14 13 12 34 34 H 1.09001 * 109.60970 * 300.21251 * 17 15 14 35 35 H 1.08999 * 109.52800 * 296.75888 * 18 17 15 36 36 H 1.09011 * 109.52473 * 56.94280 * 18 17 15 37 37 H 1.08994 * 109.48616 * 182.41027 * 19 18 17 38 38 H 1.09010 * 109.47643 * 62.37451 * 19 18 17 39 39 H 1.09005 * 109.48210 * 178.86530 * 21 20 19 40 40 H 1.09002 * 109.49324 * 58.83618 * 21 20 19 41 41 H 1.08997 * 109.52319 * 297.70285 * 22 21 20 42 42 H 1.09002 * 109.51945 * 177.51195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0633 -1.1809 5 1 1.4104 1.9279 -1.9628 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2795 -2.6586 9 1 1.9627 5.1785 -2.3346 10 1 4.3622 5.0607 -2.6670 11 1 2.8844 3.6725 -3.9967 12 6 2.3731 2.0328 1.2632 13 6 1.1425 2.7383 1.8364 14 7 1.4971 3.3894 3.1000 15 6 0.5644 4.0759 3.7894 16 8 -0.5684 4.1551 3.3635 17 6 0.9295 4.7462 5.0889 18 6 2.0292 5.7827 4.8397 19 6 2.3378 6.5130 6.1493 20 8 1.1442 7.1215 6.6466 21 6 0.0968 6.1954 6.9425 22 6 -0.3018 5.4526 5.6646 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 5.0491 3.4028 -0.7835 29 1 3.1615 2.7643 1.0859 30 1 2.7254 1.2835 1.9721 31 1 0.3540 2.0069 2.0137 32 1 0.7901 3.4877 1.1276 33 1 2.4032 3.3264 3.4404 34 1 1.2862 3.9993 5.7981 35 1 2.9283 5.2812 4.4817 36 1 1.6902 6.5012 4.0932 37 1 3.0894 7.2813 5.9688 38 1 2.7151 5.8002 6.8827 39 1 -0.7659 6.7351 7.3333 40 1 0.4446 5.4785 7.6862 41 1 -0.6878 6.1643 4.9349 42 1 -1.0697 4.7147 5.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753076828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:31 Heat of formation + Delta-G solvation = -101.653370 kcal Electronic energy + Delta-G solvation = -21431.917874 eV Core-core repulsion = 18218.068784 eV Total energy + Delta-G solvation = -3213.849090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30014 -39.56021 -38.10584 -35.68028 -34.70938 -33.84936 -32.07832 -31.29120 -29.42930 -26.96490 -25.89696 -24.48218 -23.48589 -22.21574 -22.02822 -20.84136 -18.81959 -18.13855 -17.24936 -17.03829 -16.93408 -16.66583 -16.17817 -15.79282 -15.62241 -15.44324 -15.18366 -14.67207 -14.28817 -14.17628 -14.09825 -13.68700 -13.30360 -13.23903 -13.02655 -12.64413 -12.52859 -12.43298 -12.33399 -12.30093 -12.04442 -11.71439 -11.69916 -11.52447 -11.45588 -10.94870 -10.56520 -10.44330 -10.04150 -8.61540 -7.88249 -5.50843 1.42631 1.46115 1.52133 1.60310 2.18944 2.48961 2.99526 3.19722 3.54490 3.67020 3.76289 3.82596 4.01407 4.23591 4.29247 4.30916 4.41813 4.45001 4.51519 4.62418 4.67761 4.72867 4.79461 4.80274 4.82608 4.84219 5.06274 5.08093 5.10497 5.20922 5.25397 5.26723 5.42498 5.54190 5.64240 5.72616 6.27652 6.42964 6.59391 7.12822 7.26007 7.80907 8.32864 9.07723 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.004649 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.173145 B = 6021.305268 C = 6837.025802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.275 4.275 5 H 0.051 0.949 6 C -0.025 4.025 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.288 1.288 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.146 3.854 13 C 0.119 3.881 14 N -0.711 5.711 15 C 0.508 3.492 16 O -0.593 6.593 17 C -0.100 4.100 18 C -0.147 4.147 19 C 0.064 3.936 20 O -0.405 6.405 21 C 0.065 3.935 22 C -0.134 4.134 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.255 0.745 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.024 0.976 33 H 0.412 0.588 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 2.918 16.469 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.405 4.405 5 H 0.068 0.932 6 C -0.223 4.223 7 N -0.552 5.552 8 Si 0.777 3.223 9 H -0.215 1.215 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.018 3.982 13 C -0.007 4.007 14 N -0.363 5.363 15 C 0.295 3.705 16 O -0.474 6.474 17 C -0.121 4.121 18 C -0.185 4.185 19 C -0.013 4.013 20 O -0.324 6.324 21 C -0.012 4.012 22 C -0.173 4.173 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.882 3.202 16.144 16.709 hybrid contribution 0.188 0.381 -1.190 1.264 sum -2.694 3.583 14.954 15.611 Atomic orbital electron populations 1.22219 0.98083 1.00866 1.00280 1.21010 0.93096 0.85423 0.99330 1.43855 1.76419 1.09664 1.02017 1.19134 1.04486 1.22040 0.94828 0.93183 1.25722 0.93957 1.02668 0.99965 1.70071 1.03465 1.37934 1.43752 0.85641 0.76571 0.80009 0.80043 1.21496 1.21168 1.19951 1.20926 0.94298 0.96764 0.86168 1.21908 0.99947 0.95215 0.83676 1.45994 1.14101 1.52939 1.23242 1.21339 0.84469 0.77842 0.86836 1.90657 1.22724 1.62629 1.71366 1.21417 0.98346 0.98753 0.93602 1.22226 0.98426 0.97811 1.00047 1.22715 0.86934 0.98450 0.93157 1.87919 1.24495 1.35176 1.84807 1.22709 0.91018 0.92803 0.94624 1.22002 0.96751 0.99938 0.98577 0.94795 0.91147 0.94168 0.94447 0.92885 0.93589 0.90797 0.93533 0.93521 0.95738 0.75172 0.85303 0.88611 0.92884 0.87400 0.90388 0.87528 0.90652 0.93091 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 10.21 71.98 0.73 -4.87 16 2 C 0.14 5.60 6.44 86.38 0.56 6.16 16 3 N -0.60 -29.11 2.43 -702.01 -1.71 -30.82 16 4 C -0.27 -14.94 9.45 84.03 0.79 -14.15 16 5 H 0.05 2.77 7.92 -2.91 -0.02 2.75 16 6 C -0.02 -1.34 4.95 84.86 0.42 -0.92 16 7 N -0.91 -50.53 11.47 21.65 0.25 -50.28 16 8 Si 0.95 44.33 29.60 68.60 2.03 46.36 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.41 5.45 86.38 0.47 6.88 16 13 C 0.12 4.89 6.00 86.38 0.52 5.41 16 14 N -0.71 -23.01 5.47 -463.05 -2.53 -25.54 16 15 C 0.51 16.51 7.16 87.66 0.63 17.14 16 16 O -0.59 -24.93 15.97 -3.04 -0.05 -24.98 16 17 C -0.10 -2.20 2.61 -11.42 -0.03 -2.23 16 18 C -0.15 -2.91 5.30 30.68 0.16 -2.75 16 19 C 0.06 1.01 6.84 72.01 0.49 1.50 16 20 O -0.40 -8.28 10.77 -148.98 -1.60 -9.88 16 21 C 0.06 1.08 6.84 72.01 0.49 1.57 16 22 C -0.13 -2.99 4.73 30.69 0.15 -2.84 16 23 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 25 H 0.04 1.47 6.64 -2.39 -0.02 1.46 16 26 H 0.04 1.58 8.08 -2.38 -0.02 1.56 16 27 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 28 H 0.25 13.67 8.31 -92.70 -0.77 12.90 16 29 H 0.07 3.67 5.52 -2.39 -0.01 3.66 16 30 H 0.05 1.85 7.86 -2.39 -0.02 1.83 16 31 H 0.05 1.96 6.64 -2.39 -0.02 1.94 16 32 H 0.02 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.41 10.70 7.99 -92.71 -0.74 9.96 16 34 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 1.62 7.70 -2.39 -0.02 1.60 16 36 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 1.42 8.02 -2.39 -0.02 1.40 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.14 336.95 2.03 -66.12 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.25 Total: 18.13 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.38 Total: 10.90 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -3.99 Total: -106.64 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.65 Total: -34.86 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.14 2.03 -66.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753076828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.537 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds