Wall clock time and date at job start Mon Mar 30 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47169 * 2 1 4 4 C 1.42889 * 114.00184 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.55572 * 4.41525 * 4 3 2 6 6 C 1.53001 * 117.50170 * 218.74753 * 4 3 2 7 7 C 1.53002 * 117.49761 * 150.08835 * 4 3 2 8 8 H 1.08993 * 117.50099 * 359.97287 * 7 4 3 9 9 C 1.50708 * 117.50012 * 214.98040 * 7 4 3 10 10 O 1.21281 * 119.99604 * 359.97438 * 9 7 4 11 11 N 1.34773 * 120.00187 * 179.97438 * 9 7 4 12 12 C 1.46499 * 119.99785 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46899 * 179.97438 * 12 11 9 14 14 N 1.46501 * 109.47268 * 179.97438 * 13 12 11 15 15 C 1.36941 * 119.99851 * 270.00267 * 14 13 12 16 16 H 1.08004 * 119.99833 * 146.14736 * 15 14 13 17 17 C 1.38807 * 119.99978 * 326.14187 * 15 14 13 18 18 N 1.31617 * 120.00349 * 336.90387 * 17 15 14 19 19 Si 1.86804 * 119.99767 * 156.90517 * 17 15 14 20 20 H 1.48497 * 109.47409 * 90.00056 * 19 17 15 21 21 H 1.48500 * 109.46973 * 210.00031 * 19 17 15 22 22 H 1.48505 * 109.47201 * 329.99573 * 19 17 15 23 23 C 1.46498 * 120.00006 * 89.99972 * 14 13 12 24 24 C 1.53003 * 109.46832 * 90.32655 * 23 14 13 25 25 H 1.08999 * 109.47651 * 299.99929 * 1 2 3 26 26 H 1.08998 * 109.47186 * 60.00307 * 1 2 3 27 27 H 1.09001 * 109.46579 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47186 * 119.99693 * 2 1 3 29 29 H 1.08999 * 109.47651 * 240.00071 * 2 1 3 30 30 H 1.09007 * 117.49926 * 359.97438 * 6 4 3 31 31 H 1.08995 * 117.50190 * 145.02022 * 6 4 3 32 32 H 0.96999 * 120.00199 * 359.97438 * 11 9 7 33 33 H 1.08997 * 109.46976 * 299.99569 * 12 11 9 34 34 H 1.09001 * 109.47445 * 60.00176 * 12 11 9 35 35 H 1.08995 * 109.47534 * 300.00251 * 13 12 11 36 36 H 1.09006 * 109.47271 * 59.99949 * 13 12 11 37 37 H 0.97006 * 120.00413 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.46978 * 210.32572 * 23 14 13 39 39 H 1.09005 * 109.47173 * 330.32785 * 23 14 13 40 40 H 1.09000 * 109.47271 * 299.99737 * 24 23 14 41 41 H 1.08996 * 109.46967 * 60.00696 * 24 23 14 42 42 H 1.09003 * 109.46774 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9770 0.5199 -0.0748 6 6 4.0511 2.5712 0.8501 7 6 4.0423 2.6886 -0.6761 8 1 3.3582 3.4104 -1.1221 9 6 5.3540 2.5060 -1.3955 10 8 5.8845 1.4157 -1.4217 11 7 5.9375 3.5543 -2.0095 12 6 7.2128 3.3769 -2.7083 13 6 7.6525 4.7114 -3.3138 14 7 8.9281 4.5342 -4.0120 15 6 10.1075 4.7125 -3.3392 16 1 10.9689 4.1115 -3.5909 17 6 10.1958 5.6655 -2.3340 18 7 9.3591 6.6813 -2.3147 19 14 11.5024 5.5064 -1.0083 20 1 12.7360 6.2102 -1.4421 21 1 11.0043 6.1123 0.2527 22 1 11.8053 4.0704 -0.7817 23 6 8.9421 4.1662 -5.4300 24 6 8.9508 5.4344 -6.2859 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.3726 3.2164 1.4082 31 1 5.0055 2.3620 1.3333 32 1 5.5130 4.4262 -1.9888 33 1 7.9684 3.0309 -2.0030 34 1 7.0925 2.6401 -3.5025 35 1 6.8968 5.0570 -4.0190 36 1 7.7726 5.4486 -2.5198 37 1 9.4210 7.3476 -1.6124 38 1 9.8341 3.5775 -5.6438 39 1 8.0542 3.5777 -5.6614 40 1 8.0587 6.0232 -6.0721 41 1 9.8386 6.0228 -6.0545 42 1 8.9616 5.1606 -7.3409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753079053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:51 Heat of formation + Delta-G solvation = -42.566469 kcal Electronic energy + Delta-G solvation = -20638.928722 eV Core-core repulsion = 17427.641833 eV Total energy + Delta-G solvation = -3211.286890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80357 -38.18285 -36.33077 -35.10946 -34.05719 -31.83768 -31.04603 -29.73694 -27.60439 -24.66504 -23.51662 -23.11795 -22.24558 -21.83575 -20.15432 -19.65370 -17.75739 -16.75449 -16.16332 -15.76058 -15.69008 -15.12473 -14.79232 -14.50637 -14.03848 -13.77351 -13.52504 -13.01912 -12.91489 -12.65529 -12.49590 -12.34122 -12.21522 -12.10971 -11.42356 -11.20877 -11.15434 -11.10061 -10.88561 -10.64317 -10.60274 -10.37633 -10.05905 -9.93345 -9.80207 -9.63478 -9.25989 -8.58957 -8.47736 -6.68803 -5.84042 -3.37419 2.72303 3.07505 3.34434 3.42450 3.47381 3.68188 3.91697 4.47078 4.67973 4.75298 4.84332 4.86868 5.05676 5.14000 5.17369 5.28367 5.33890 5.53922 5.55679 5.63403 5.66821 5.84882 5.88715 6.07659 6.13539 6.18208 6.40506 6.52337 6.54298 6.64558 6.87853 6.95341 7.02415 7.04603 7.23173 7.58964 7.78637 7.93994 8.44618 8.58203 9.12763 9.76698 10.32201 11.16555 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003652 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.861653 B = 7666.120115 C = 8409.290127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.050 3.950 5 H 0.124 0.876 6 C -0.155 4.155 7 C -0.191 4.191 8 H 0.128 0.872 9 C 0.537 3.463 10 O -0.552 6.552 11 N -0.712 5.712 12 C 0.099 3.901 13 C 0.133 3.867 14 N -0.581 5.581 15 C -0.257 4.257 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.141 3.859 24 C -0.162 4.162 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.399 0.601 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.028 0.972 36 H 0.106 0.894 37 H 0.254 0.746 38 H 0.043 0.957 39 H 0.033 0.967 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.793 -7.822 3.689 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.276 6.276 4 C -0.009 4.009 5 H 0.142 0.858 6 C -0.193 4.193 7 C -0.212 4.212 8 H 0.146 0.854 9 C 0.323 3.677 10 O -0.431 6.431 11 N -0.362 5.362 12 C -0.026 4.026 13 C 0.005 3.995 14 N -0.302 5.302 15 C -0.387 4.387 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.530 5.530 19 Si 0.725 3.275 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.203 1.203 23 C 0.015 3.985 24 C -0.222 4.222 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.233 0.767 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.500 -8.295 3.732 17.117 hybrid contribution 0.583 0.395 0.634 0.948 sum -13.917 -7.901 4.366 16.588 Atomic orbital electron populations 1.21754 0.93608 1.02342 1.03151 1.22561 0.95436 0.83362 1.00598 1.87796 1.18795 1.27009 1.94037 1.22604 0.81673 0.94495 1.02102 0.85841 1.23440 1.02977 1.01865 0.91040 1.22727 0.97810 1.04040 0.96639 0.85450 1.19522 0.84995 0.84509 0.78710 1.90667 1.65332 1.25671 1.61427 1.46025 1.24477 1.11641 1.54056 1.22359 0.82645 1.02020 0.95618 1.21101 0.86496 0.93877 0.97977 1.43719 1.01963 1.80483 1.04003 1.19083 0.90618 1.13986 1.14969 0.91868 1.25070 0.98236 0.94361 1.01457 1.69964 1.39408 1.10298 1.33357 0.86411 0.81405 0.77995 0.81703 1.21266 1.21470 1.20293 1.20909 0.98347 0.94216 0.85068 1.22266 1.01901 1.00734 0.97267 0.91840 0.91788 0.90965 0.92996 0.92895 0.87250 0.87443 0.76719 0.91671 0.93296 0.95399 0.87680 0.93555 0.93826 0.94810 0.93846 0.92634 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.53 6.53 37.16 0.24 0.77 16 3 O -0.36 -4.31 10.60 -35.23 -0.37 -4.68 16 4 C 0.05 0.63 5.95 -26.73 -0.16 0.47 16 5 H 0.12 1.60 7.45 -51.93 -0.39 1.22 16 6 C -0.16 -1.81 10.19 -26.69 -0.27 -2.08 16 7 C -0.19 -2.52 6.14 -91.73 -0.56 -3.09 16 8 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 9 C 0.54 9.18 7.61 -10.98 -0.08 9.10 16 10 O -0.55 -11.40 16.26 5.56 0.09 -11.31 16 11 N -0.71 -12.18 5.56 -60.29 -0.33 -12.51 16 12 C 0.10 2.03 6.00 -4.04 -0.02 2.01 16 13 C 0.13 2.97 5.41 -4.04 -0.02 2.95 16 14 N -0.58 -14.14 2.45 -173.23 -0.42 -14.57 16 15 C -0.26 -6.89 9.48 -15.06 -0.14 -7.04 16 16 H 0.06 1.70 7.93 -52.48 -0.42 1.29 16 17 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16 18 N -0.89 -24.61 11.31 55.49 0.63 -23.98 16 19 Si 0.90 21.38 29.61 -169.99 -5.03 16.34 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.14 2.95 6.39 -4.04 -0.03 2.93 16 24 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.40 5.82 8.47 -40.82 -0.35 5.48 16 33 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.11 2.63 5.31 -51.93 -0.28 2.36 16 37 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 39 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -30.66 353.78 -7.80 -38.47 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.31 Total: 4.29 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.37 Total: 2.62 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.13 Total: -51.06 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.28 Total: -15.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.66 -7.80 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753079053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.101 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds