Wall clock time and date at job start Mon Mar 30 2020 00:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47169 * 2 1 4 4 C 1.42889 * 114.00184 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.55572 * 4.41525 * 4 3 2 6 6 C 1.53001 * 117.50170 * 218.74753 * 4 3 2 7 7 C 1.53002 * 117.49761 * 150.08835 * 4 3 2 8 8 H 1.08993 * 117.50099 * 359.97287 * 7 4 3 9 9 C 1.50708 * 117.50012 * 214.98040 * 7 4 3 10 10 O 1.21281 * 119.99604 * 359.97438 * 9 7 4 11 11 N 1.34773 * 120.00187 * 179.97438 * 9 7 4 12 12 C 1.46499 * 119.99785 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46899 * 179.97438 * 12 11 9 14 14 N 1.46501 * 109.47268 * 179.97438 * 13 12 11 15 15 C 1.36941 * 119.99851 * 270.00267 * 14 13 12 16 16 H 1.08004 * 119.99833 * 146.14736 * 15 14 13 17 17 C 1.38807 * 119.99978 * 326.14187 * 15 14 13 18 18 N 1.31617 * 120.00349 * 336.90387 * 17 15 14 19 19 Si 1.86804 * 119.99767 * 156.90517 * 17 15 14 20 20 H 1.48497 * 109.47409 * 90.00056 * 19 17 15 21 21 H 1.48500 * 109.46973 * 210.00031 * 19 17 15 22 22 H 1.48505 * 109.47201 * 329.99573 * 19 17 15 23 23 C 1.46498 * 120.00006 * 89.99972 * 14 13 12 24 24 C 1.53003 * 109.46832 * 90.32655 * 23 14 13 25 25 H 1.08999 * 109.47651 * 299.99929 * 1 2 3 26 26 H 1.08998 * 109.47186 * 60.00307 * 1 2 3 27 27 H 1.09001 * 109.46579 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47186 * 119.99693 * 2 1 3 29 29 H 1.08999 * 109.47651 * 240.00071 * 2 1 3 30 30 H 1.09007 * 117.49926 * 359.97438 * 6 4 3 31 31 H 1.08995 * 117.50190 * 145.02022 * 6 4 3 32 32 H 0.96999 * 120.00199 * 359.97438 * 11 9 7 33 33 H 1.08997 * 109.46976 * 299.99569 * 12 11 9 34 34 H 1.09001 * 109.47445 * 60.00176 * 12 11 9 35 35 H 1.08995 * 109.47534 * 300.00251 * 13 12 11 36 36 H 1.09006 * 109.47271 * 59.99949 * 13 12 11 37 37 H 0.97006 * 120.00413 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.46978 * 210.32572 * 23 14 13 39 39 H 1.09005 * 109.47173 * 330.32785 * 23 14 13 40 40 H 1.09000 * 109.47271 * 299.99737 * 24 23 14 41 41 H 1.08996 * 109.46967 * 60.00696 * 24 23 14 42 42 H 1.09003 * 109.46774 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9770 0.5199 -0.0748 6 6 4.0511 2.5712 0.8501 7 6 4.0423 2.6886 -0.6761 8 1 3.3582 3.4104 -1.1221 9 6 5.3540 2.5060 -1.3955 10 8 5.8845 1.4157 -1.4217 11 7 5.9375 3.5543 -2.0095 12 6 7.2128 3.3769 -2.7083 13 6 7.6525 4.7114 -3.3138 14 7 8.9281 4.5342 -4.0120 15 6 10.1075 4.7125 -3.3392 16 1 10.9689 4.1115 -3.5909 17 6 10.1958 5.6655 -2.3340 18 7 9.3591 6.6813 -2.3147 19 14 11.5024 5.5064 -1.0083 20 1 12.7360 6.2102 -1.4421 21 1 11.0043 6.1123 0.2527 22 1 11.8053 4.0704 -0.7817 23 6 8.9421 4.1662 -5.4300 24 6 8.9508 5.4344 -6.2859 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.3726 3.2164 1.4082 31 1 5.0055 2.3620 1.3333 32 1 5.5130 4.4262 -1.9888 33 1 7.9684 3.0309 -2.0030 34 1 7.0925 2.6401 -3.5025 35 1 6.8968 5.0570 -4.0190 36 1 7.7726 5.4486 -2.5198 37 1 9.4210 7.3476 -1.6124 38 1 9.8341 3.5775 -5.6438 39 1 8.0542 3.5777 -5.6614 40 1 8.0587 6.0232 -6.0721 41 1 9.8386 6.0228 -6.0545 42 1 8.9616 5.1606 -7.3409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753079053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:50 Heat of formation + Delta-G solvation = -62.052693 kcal Electronic energy + Delta-G solvation = -20639.773709 eV Core-core repulsion = 17427.641833 eV Total energy + Delta-G solvation = -3212.131876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08735 -39.24263 -38.08565 -36.13788 -35.62384 -33.78884 -31.79122 -31.37993 -29.38056 -26.34440 -25.07968 -23.80480 -23.52644 -23.07333 -21.85736 -21.10686 -18.98616 -18.41573 -17.41370 -17.08072 -16.89651 -16.50624 -16.36512 -15.86039 -15.69917 -15.35516 -14.96628 -14.43737 -14.18219 -13.90992 -13.73652 -13.58297 -13.36185 -13.11042 -13.05606 -12.86378 -12.64511 -12.42461 -12.27631 -12.17534 -11.98203 -11.89821 -11.75301 -11.61976 -11.53161 -11.01036 -10.56739 -10.23189 -10.06729 -8.65459 -7.86394 -5.42899 1.42884 1.43475 1.47605 1.56484 1.95596 2.48770 2.60804 2.82645 3.22408 3.62953 3.70772 3.83244 4.00634 4.04564 4.17769 4.32365 4.34994 4.44059 4.44946 4.45392 4.50579 4.74259 4.77868 4.81712 4.87966 4.90244 4.98397 5.02715 5.04611 5.22172 5.27499 5.29064 5.40575 5.56664 5.65558 5.79582 6.16794 6.42951 6.57500 7.12797 7.22163 7.83071 8.33095 9.10800 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003652 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.861653 B = 7666.120115 C = 8409.290127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.367 6.367 4 C 0.051 3.949 5 H 0.115 0.885 6 C -0.140 4.140 7 C -0.195 4.195 8 H 0.149 0.851 9 C 0.536 3.464 10 O -0.591 6.591 11 N -0.706 5.706 12 C 0.120 3.880 13 C 0.141 3.859 14 N -0.598 5.598 15 C -0.268 4.268 16 H 0.055 0.945 17 C -0.033 4.033 18 N -0.909 5.909 19 Si 0.950 3.050 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.135 3.865 24 C -0.150 4.150 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.413 0.587 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.028 0.972 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 -8.078 3.941 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.286 6.286 4 C -0.008 4.008 5 H 0.132 0.868 6 C -0.178 4.178 7 C -0.216 4.216 8 H 0.166 0.834 9 C 0.324 3.676 10 O -0.473 6.473 11 N -0.357 5.357 12 C -0.007 4.007 13 C 0.014 3.986 14 N -0.320 5.320 15 C -0.398 4.398 16 H 0.073 0.927 17 C -0.230 4.230 18 N -0.553 5.553 19 Si 0.778 3.222 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.205 1.205 23 C 0.009 3.991 24 C -0.209 4.209 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.249 0.751 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.921 -8.541 3.975 18.499 hybrid contribution 0.981 0.405 0.506 1.176 sum -14.939 -8.135 4.481 17.591 Atomic orbital electron populations 1.21767 0.92035 1.03662 1.02986 1.22811 0.96726 0.82286 1.01073 1.87784 1.18100 1.28680 1.94052 1.22537 0.82175 0.94037 1.02053 0.86779 1.23525 1.03081 1.01352 0.89824 1.22679 0.95951 1.05507 0.97514 0.83378 1.20161 0.85912 0.83561 0.77989 1.90646 1.66713 1.27177 1.62766 1.45882 1.23347 1.12655 1.53792 1.21850 0.83402 1.00696 0.94719 1.20957 0.86275 0.93898 0.97501 1.43960 1.01842 1.80625 1.05548 1.19242 0.91368 1.13647 1.15585 0.92702 1.25640 1.00159 0.94288 1.02945 1.70060 1.40726 1.10763 1.33764 0.85565 0.79516 0.77594 0.79511 1.20919 1.21429 1.20471 1.21066 0.99382 0.95029 0.83587 1.22112 1.00169 0.99434 0.99227 0.91685 0.92225 0.88940 0.91969 0.93050 0.84997 0.87821 0.75070 0.94971 0.93663 0.93925 0.90050 0.93758 0.93771 0.92743 0.94501 0.95317 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.05 0.80 6.53 71.98 0.47 1.27 16 3 O -0.37 -8.19 10.60 -148.98 -1.58 -9.77 16 4 C 0.05 1.21 5.95 30.60 0.18 1.39 16 5 H 0.11 2.92 7.45 -2.39 -0.02 2.90 16 6 C -0.14 -2.98 10.19 30.62 0.31 -2.67 16 7 C -0.20 -4.85 6.14 -11.51 -0.07 -4.92 16 8 H 0.15 3.06 8.14 -2.39 -0.02 3.04 16 9 C 0.54 18.04 7.61 87.66 0.67 18.71 16 10 O -0.59 -24.59 16.26 -3.03 -0.05 -24.64 16 11 N -0.71 -23.76 5.56 -463.06 -2.57 -26.33 16 12 C 0.12 4.95 6.00 86.38 0.52 5.47 16 13 C 0.14 6.28 5.41 86.38 0.47 6.75 16 14 N -0.60 -29.14 2.45 -701.98 -1.72 -30.86 16 15 C -0.27 -14.52 9.48 84.03 0.80 -13.72 16 16 H 0.06 3.00 7.93 -2.91 -0.02 2.98 16 17 C -0.03 -1.78 4.95 84.86 0.42 -1.36 16 18 N -0.91 -50.77 11.31 21.65 0.24 -50.53 16 19 Si 0.95 44.28 29.61 68.60 2.03 46.31 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 C 0.13 5.51 6.39 86.38 0.55 6.06 16 24 C -0.15 -5.72 10.24 71.98 0.74 -4.98 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.41 11.59 8.47 -92.71 -0.79 10.81 16 33 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 36 H 0.08 4.11 5.31 -2.38 -0.01 4.10 16 37 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 38 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 39 H 0.05 1.99 8.07 -2.38 -0.02 1.97 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -65.60 353.78 2.35 -63.25 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.20 Total: 21.70 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.79 Total: 10.86 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.05 Total: -107.72 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.63 Total: -34.41 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.60 2.35 -63.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753079053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.201 kcal (2) G-P(sol) polarization free energy of solvation -65.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds