Wall clock time and date at job start Mon Mar 30 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46899 * 2 1 4 4 C 1.36933 * 120.00158 * 263.78333 * 3 2 1 5 5 H 1.08007 * 120.00144 * 142.61719 * 4 3 2 6 6 C 1.38811 * 120.00507 * 322.62570 * 4 3 2 7 7 N 1.31613 * 120.00251 * 157.38500 * 6 4 3 8 8 Si 1.86803 * 119.99559 * 337.37927 * 6 4 3 9 9 H 1.48503 * 109.46682 * 95.71719 * 8 6 4 10 10 H 1.48497 * 109.47421 * 215.71518 * 8 6 4 11 11 H 1.48503 * 109.47057 * 335.72056 * 8 6 4 12 12 C 1.46503 * 119.99760 * 83.79094 * 3 2 1 13 13 C 1.53004 * 109.47199 * 89.99878 * 12 3 2 14 14 N 1.46498 * 109.47038 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99630 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00673 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99828 * 179.97438 * 15 14 13 18 18 C 1.52993 * 109.47296 * 179.97438 * 17 15 14 19 19 H 1.08998 * 110.56905 * 307.68518 * 18 17 15 20 20 C 1.54513 * 110.51342 * 184.99989 * 18 17 15 21 21 C 1.54479 * 104.18664 * 241.28827 * 20 18 17 22 22 O 1.44644 * 104.69583 * 336.18811 * 21 20 18 23 23 C 1.44424 * 105.36950 * 40.34893 * 22 21 20 24 24 H 1.08997 * 109.46854 * 299.99429 * 1 2 3 25 25 H 1.08997 * 109.47320 * 59.99917 * 1 2 3 26 26 H 1.09000 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47174 * 240.00480 * 2 1 3 28 28 H 1.08997 * 109.47320 * 120.00083 * 2 1 3 29 29 H 0.97010 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47084 * 329.99589 * 12 3 2 31 31 H 1.09002 * 109.47176 * 209.99323 * 12 3 2 32 32 H 1.09006 * 109.47157 * 59.99573 * 13 12 3 33 33 H 1.09000 * 109.47279 * 300.00100 * 13 12 3 34 34 H 0.96993 * 119.99914 * 0.02562 * 14 13 12 35 35 H 1.09006 * 109.47051 * 60.00246 * 17 15 14 36 36 H 1.09000 * 109.47413 * 300.00757 * 17 15 14 37 37 H 1.08997 * 110.50911 * 0.02562 * 20 18 17 38 38 H 1.09007 * 110.50860 * 122.57464 * 20 18 17 39 39 H 1.08995 * 110.36951 * 94.92382 * 21 20 18 40 40 H 1.09004 * 110.36880 * 217.25921 * 21 20 18 41 41 H 1.08998 * 110.37405 * 200.73678 * 23 22 21 42 42 H 1.08999 * 110.46949 * 78.44072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3676 1.9840 -1.1789 5 1 2.1496 3.0301 -1.3359 6 6 3.0016 1.2505 -2.1723 7 7 2.9449 1.6520 -3.4245 8 14 3.9354 -0.3063 -1.7319 9 1 3.0563 -1.4854 -1.9370 10 1 5.1347 -0.4263 -2.5993 11 1 4.3573 -0.2447 -0.3094 12 6 2.1330 2.1175 1.2613 13 6 3.5251 1.8959 1.8565 14 7 3.6400 2.6327 3.1175 15 6 4.7866 2.5842 3.8241 16 8 5.7234 1.9312 3.4159 17 6 4.9051 3.3426 5.1210 18 6 6.2965 3.1199 5.7168 19 1 6.5182 2.0548 5.7843 20 6 6.4026 3.7842 7.1078 21 6 7.5274 4.8301 6.9431 22 8 8.3214 4.3439 5.8362 23 6 7.3690 3.8435 4.8726 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.3883 1.1396 -4.1187 30 1 1.3776 1.7598 1.9609 31 1 1.9823 3.1811 1.0762 32 1 4.2805 2.2536 1.1569 33 1 3.6760 0.8324 2.0416 34 1 2.8906 3.1547 3.4442 35 1 4.1492 2.9860 5.8208 36 1 4.7550 4.4061 4.9351 37 1 5.4635 4.2709 7.3712 38 1 6.6742 3.0469 7.8634 39 1 7.1055 5.8069 6.7065 40 1 8.1297 4.8855 7.8499 41 1 7.8514 3.1431 4.1908 42 1 6.9217 4.6669 4.3158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753079104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:41 Heat of formation + Delta-G solvation = -70.716131 kcal Electronic energy + Delta-G solvation = -21016.115917 eV Core-core repulsion = 17803.608366 eV Total energy + Delta-G solvation = -3212.507551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11191 -38.84836 -36.63316 -34.40613 -33.63885 -31.80506 -30.54374 -29.89250 -28.15791 -26.60264 -23.82370 -23.12175 -22.73068 -20.86947 -20.42019 -19.83377 -17.30157 -16.75677 -16.20207 -16.10040 -15.78583 -15.37158 -15.25446 -14.94748 -14.17128 -14.04114 -13.49419 -13.42824 -13.03756 -12.91836 -12.77298 -12.32524 -12.04302 -11.82769 -11.70397 -11.47398 -11.33609 -11.26465 -11.03271 -10.90933 -10.82583 -10.47138 -10.28862 -9.94009 -9.78528 -9.70790 -9.50843 -8.74113 -8.56877 -6.95041 -6.04487 -3.47306 2.79403 3.29397 3.34664 3.48398 3.54423 3.82816 4.33288 4.49573 4.52674 4.64465 4.83599 4.85146 5.02285 5.11143 5.21934 5.29247 5.33085 5.40957 5.47870 5.57053 5.69293 5.70796 5.77937 5.88186 5.88990 6.05695 6.11686 6.20417 6.28306 6.44533 6.57275 6.61934 6.63380 6.75319 6.84099 7.01299 7.70977 7.99876 8.31350 8.42169 8.91625 9.65204 10.03877 11.10694 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.003784 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.263182 B = 7398.146137 C = 7871.013282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 N -0.599 5.599 4 C -0.274 4.274 5 H 0.080 0.920 6 C 0.040 3.960 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.286 1.286 10 H -0.300 1.300 11 H -0.266 1.266 12 C 0.143 3.857 13 C 0.092 3.908 14 N -0.725 5.725 15 C 0.503 3.497 16 O -0.541 6.541 17 C -0.133 4.133 18 C -0.105 4.105 19 H 0.092 0.908 20 C -0.153 4.153 21 C 0.043 3.957 22 O -0.379 6.379 23 C 0.053 3.947 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 4.341 20.880 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.322 5.322 4 C -0.403 4.403 5 H 0.098 0.902 6 C -0.161 4.161 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.214 1.214 10 H -0.228 1.228 11 H -0.190 1.190 12 C 0.015 3.985 13 C -0.033 4.033 14 N -0.377 5.377 15 C 0.289 3.711 16 O -0.419 6.419 17 C -0.174 4.174 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.190 4.190 21 C -0.034 4.034 22 O -0.298 6.298 23 C -0.023 4.023 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.229 0.771 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.024 3.843 20.333 20.791 hybrid contribution -0.073 -0.696 0.223 0.735 sum 1.950 3.146 20.556 20.887 Atomic orbital electron populations 1.22227 0.98807 0.99521 1.01623 1.21162 0.92714 0.86421 0.99279 1.44089 1.74273 1.11471 1.02325 1.18777 1.34088 0.97280 0.90138 0.90232 1.25469 0.97354 0.98061 0.95265 1.69864 1.43772 1.40705 0.99380 0.86981 0.79944 0.83662 0.79025 1.21382 1.22765 1.19003 1.21053 0.91995 0.97265 0.88155 1.22423 1.02015 0.95706 0.83205 1.46156 1.15430 1.51563 1.24521 1.20628 0.82798 0.81821 0.85874 1.90711 1.38145 1.42396 1.70610 1.21782 0.98558 1.01608 0.95409 1.22286 0.94019 1.02185 0.93969 0.88920 1.23033 0.99732 0.98922 0.97346 1.23433 0.92645 0.96512 0.90806 1.89166 1.30188 1.80575 1.29872 1.23523 0.89872 0.97264 0.91651 0.93877 0.92166 0.94169 0.92337 0.94757 0.92592 0.93756 0.92448 0.91036 0.92557 0.77065 0.88659 0.88782 0.90303 0.90514 0.92364 0.89297 0.88069 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.23 37.16 0.38 -2.58 16 2 C 0.13 2.75 5.01 -4.04 -0.02 2.73 16 3 N -0.60 -13.66 2.08 -173.23 -0.36 -14.02 16 4 C -0.27 -7.47 9.91 -15.06 -0.15 -7.62 16 5 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 6 C 0.04 1.14 5.26 -17.43 -0.09 1.04 16 7 N -0.90 -27.15 13.97 55.49 0.78 -26.38 16 8 Si 0.87 22.39 25.05 -169.99 -4.26 18.13 16 9 H -0.29 -7.08 6.69 56.52 0.38 -6.70 16 10 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.14 2.59 5.80 -4.04 -0.02 2.57 16 13 C 0.09 1.68 6.00 -4.04 -0.02 1.65 16 14 N -0.73 -9.90 5.56 -60.29 -0.33 -10.23 16 15 C 0.50 7.10 7.65 -10.98 -0.08 7.02 16 16 O -0.54 -10.12 15.03 5.56 0.08 -10.04 16 17 C -0.13 -1.23 4.92 -27.89 -0.14 -1.36 16 18 C -0.11 -1.08 2.70 -89.05 -0.24 -1.32 16 19 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 20 C -0.15 -1.16 6.73 -25.16 -0.17 -1.33 16 21 C 0.04 0.37 7.65 37.93 0.29 0.66 16 22 O -0.38 -4.78 11.65 -35.23 -0.41 -5.19 16 23 C 0.05 0.65 6.39 37.94 0.24 0.90 16 24 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.38 3.60 -51.93 -0.19 1.20 16 28 H 0.03 0.67 8.12 -51.93 -0.42 0.24 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.70 7.96 -51.93 -0.41 0.28 16 37 H 0.08 0.45 7.73 -51.93 -0.40 0.05 16 38 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.42 7.80 -51.93 -0.40 1.02 16 42 H 0.06 0.67 7.74 -51.93 -0.40 0.27 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -33.12 337.53 -6.65 -39.78 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.21 Total: 0.51 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.03 Total: 2.35 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.08 Total: -50.63 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.33 Total: -15.23 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.26 Total: 18.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.12 -6.65 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753079104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.939 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds